INFERNAL1/a [1.1.5 | Sep 2023] NAME UCA1 ACC RF02202 DESC Urothelial cancer associated 1 conserved region STATES 229 NODES 77 CLEN 75 W 163 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 22:35:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02202/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.182617 CKSUM 1013864841 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 93.50 NC 43.10 EFP7GF -7.3472 0.71869 ECMLC 0.68606 -10.30675 -1.03945 1600000 692455 0.001733 ECMGC 0.38335 -20.50121 -6.71463 1600000 78951 0.005066 ECMLI 0.62144 -8.88875 0.41294 1600000 388691 0.003087 ECMGI 0.46751 -10.01058 0.56194 1600000 56062 0.007135 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 163 249 -7.048 -7.255 -0.050 -5.669 IL 1 1 2 1 4 2 30 165 251 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 30 165 251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 2 29 163 250 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 4 2 3 5 3 0 25 160 246 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 31 169 256 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 2 29 162 248 -5.454 -0.067 -5.454 -0.246 -1.494 1.233 -1.149 D 7 5 3 8 3 0 24 159 245 -11.551 -1.585 -0.585 IL 8 8 3 8 3 3 30 168 255 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 28 160 247 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 10 8 3 11 3 0 23 157 243 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 30 166 253 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 27 159 245 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 13 11 3 14 3 0 23 156 242 -11.551 -1.585 -0.585 IL 14 14 3 14 3 2 29 165 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 26 158 244 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 16 14 3 17 3 0 22 155 240 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 28 164 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 26 156 242 -5.454 -0.067 -5.454 -0.272 -1.508 1.247 -1.164 D 19 17 3 20 3 0 21 153 239 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 27 163 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 25 155 241 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 22 20 3 23 3 0 21 152 237 -11.551 -1.585 -0.585 IL 23 23 3 23 3 2 27 161 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 24 154 239 -5.454 -0.067 -5.454 -0.246 -1.494 1.233 -1.149 D 25 23 3 26 3 0 20 151 236 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 26 160 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 24 153 238 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 28 26 3 29 3 0 19 149 234 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 25 159 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 23 151 236 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 31 29 3 32 3 0 18 148 233 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 25 157 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 22 150 235 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 34 32 3 35 3 0 18 147 231 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 24 156 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 22 149 233 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 37 35 3 38 3 0 17 145 230 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 23 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 21 147 232 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 40 38 3 41 3 0 16 144 229 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 23 153 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 20 146 230 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 43 41 3 44 3 0 16 143 227 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 22 152 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 19 145 229 -5.454 -0.067 -5.454 -1.004 -0.055 -1.167 1.066 D 46 44 3 47 3 0 15 141 226 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 21 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 19 143 228 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 49 47 3 50 3 0 14 140 224 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 20 149 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 18 142 226 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 52 50 3 53 3 0 14 139 223 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 20 148 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 17 140 225 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 55 53 3 56 3 0 13 137 221 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 19 147 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 17 139 223 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 58 56 3 59 3 0 12 136 219 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 18 145 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 16 138 221 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 61 59 3 62 3 0 12 135 218 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 18 144 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 15 136 220 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 64 62 3 65 3 0 11 133 216 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 17 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 15 135 218 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 67 65 3 68 3 0 10 132 215 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 16 141 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 14 134 217 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 70 68 3 71 3 0 10 130 213 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 16 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 14 132 215 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 73 71 3 74 3 0 9 129 212 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 15 139 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 13 131 214 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 76 74 3 77 3 0 9 128 210 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 15 137 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 12 130 212 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 79 77 3 80 3 0 8 126 209 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 14 136 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 81 80 3 83 3 1 12 128 211 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 82 80 3 83 3 0 7 125 207 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 11 127 209 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 85 83 3 86 3 0 7 124 206 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 13 133 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 11 125 208 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 88 86 3 89 3 0 6 122 204 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 12 132 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 90 89 3 92 3 1 10 124 206 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 91 89 3 92 3 0 6 121 203 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 11 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 9 123 205 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 94 92 3 95 3 0 5 119 201 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 11 129 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 9 121 203 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 97 95 3 98 3 0 4 118 199 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 10 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 99 98 3 101 3 1 8 120 201 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 100 98 3 101 3 0 4 117 198 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 9 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - C - - - ML 102 101 3 104 3 1 7 119 200 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 103 101 3 104 3 0 3 115 196 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 9 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - - - ML 105 104 3 107 3 1 7 117 198 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 106 104 3 107 3 0 3 114 195 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 8 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - - - ML 108 107 3 110 3 1 6 116 197 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 109 107 3 110 3 0 2 112 193 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 7 122 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 111 110 3 113 3 1 5 114 195 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 112 110 3 113 3 0 2 111 192 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 7 121 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 114 113 3 116 3 1 4 113 193 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 115 113 3 116 3 0 1 110 190 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 117 116 3 119 3 1 4 111 192 -5.454 -0.240 -2.940 1.629 -1.903 -1.640 -1.649 D 118 116 3 119 3 0 1 109 189 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 6 118 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 120 119 3 122 3 1 4 110 190 -5.290 -0.076 -5.290 1.499 -1.541 -1.263 -1.278 D 121 119 3 122 3 0 0 108 188 -12.913 -0.433 -1.947 IL 122 122 3 122 3 1 5 117 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 123 122 3 125 3 1 3 109 189 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 124 122 3 125 3 0 0 105 185 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 5 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - C - - - ML 126 125 3 128 3 1 3 107 187 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 127 125 3 128 3 0 0 104 183 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 4 114 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 129 128 3 131 3 1 2 106 185 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 130 128 3 131 3 0 0 102 182 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 4 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - C - - - ML 132 131 3 134 3 1 2 104 184 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 133 131 3 134 3 0 0 101 180 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 3 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - C - - - ML 135 134 3 137 3 1 2 103 182 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 136 134 3 137 3 0 0 99 178 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - U - - - ML 138 137 3 140 3 1 1 101 180 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 139 137 3 140 3 0 0 98 176 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 3 108 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - G - - - ML 141 140 3 143 3 1 1 100 179 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 142 140 3 143 3 0 0 96 175 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 144 143 3 146 3 1 1 98 177 -5.454 -0.067 -5.454 -0.246 -1.494 1.233 -1.149 D 145 143 3 146 3 0 0 95 173 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 105 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 147 146 3 149 3 1 1 97 175 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 148 146 3 149 3 0 0 93 171 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - A - - - ML 150 149 3 152 3 1 1 95 173 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 151 149 3 152 3 0 0 92 169 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 2 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 153 152 3 155 3 1 1 94 172 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 154 152 3 155 3 0 0 90 168 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 101 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - C - - - ML 156 155 3 158 3 1 1 92 170 -5.454 -0.067 -5.454 -1.141 1.065 -1.314 0.073 D 157 155 3 158 3 0 0 89 166 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - G - - - ML 159 158 3 161 3 1 1 91 168 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 160 158 3 161 3 0 0 87 164 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - C - - - ML 162 161 3 164 3 1 1 89 166 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 163 161 3 164 3 0 0 86 162 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - C - - - ML 165 164 3 167 3 1 1 88 164 -5.454 -0.067 -5.454 -1.151 1.082 -1.325 0.048 D 166 164 3 167 3 0 0 84 160 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - C - - - ML 168 167 3 170 3 1 1 86 163 -5.454 -0.067 -5.454 -0.213 1.021 -1.110 -0.635 D 169 167 3 170 3 0 0 82 158 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - A - - - ML 171 170 3 173 3 1 1 84 161 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 172 170 3 173 3 0 0 81 157 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 174 173 3 176 3 1 1 83 159 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 175 173 3 176 3 0 0 79 155 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - c - - - ML 177 176 3 179 3 1 1 81 157 -5.454 -0.067 -5.454 -0.997 0.702 -1.163 0.512 D 178 176 3 179 3 0 0 77 153 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - C - - - ML 180 179 3 182 3 1 1 80 155 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 181 179 3 182 3 0 0 76 151 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 87 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - A - - - ML 183 182 3 185 3 1 1 78 153 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 184 182 3 185 3 0 0 74 149 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - A - - - ML 186 185 3 188 3 1 1 76 151 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 187 185 3 188 3 0 0 73 147 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 84 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - G - - - ML 189 188 3 191 3 1 1 74 149 -5.454 -0.240 -2.940 -1.544 -2.216 1.669 -1.929 D 190 188 3 191 3 0 0 71 145 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - G - - - ML 192 191 3 194 3 1 1 73 147 -5.290 -0.076 -5.290 -1.285 -1.856 1.573 -1.565 D 193 191 3 194 3 0 0 70 144 -12.913 -0.433 -1.947 IL 194 194 3 194 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - C - - - ML 195 194 3 197 3 1 1 71 145 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 196 194 3 197 3 0 0 67 140 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 79 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - C - - - ML 198 197 3 200 3 1 1 69 142 -5.454 -0.067 -5.454 -1.141 1.065 -1.314 0.073 D 199 197 3 200 3 0 0 65 138 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - A - - - ML 201 200 3 203 3 1 1 67 140 -5.454 -0.067 -5.454 1.629 -1.903 -1.640 -1.649 D 202 200 3 203 3 0 0 63 135 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - U - - - ML 204 203 3 206 3 1 1 65 138 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 205 203 3 206 3 0 0 61 133 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - G - - - ML 207 206 3 209 3 1 1 63 135 -5.454 -0.067 -5.454 -1.544 -2.216 1.669 -1.929 D 208 206 3 209 3 0 0 58 130 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - C - - - ML 210 209 3 212 3 1 1 61 133 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 211 209 3 212 3 0 0 56 127 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 70 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - U - - - ML 213 212 3 215 3 1 1 59 130 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 214 212 3 215 3 0 0 53 123 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 72 - U - - - ML 216 215 3 218 3 1 1 56 127 -5.454 -0.067 -5.454 -1.448 -1.158 -1.595 1.513 D 217 215 3 218 3 0 0 50 120 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 66 138 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 73 - C - - - ML 219 218 3 221 3 1 1 53 123 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 220 218 3 221 3 0 0 45 114 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 64 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 74 - C - - - ML 222 221 3 224 3 1 1 49 118 -5.454 -0.067 -5.454 -1.675 1.557 -1.856 -1.092 D 223 221 3 224 3 0 0 32 101 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 75 - A - - - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.629 -1.903 -1.640 -1.649 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 76 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME UCA1 ACC RF02202 DESC Urothelial cancer associated 1 conserved region LENG 75 MAXL 163 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Jul 4 22:35:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02202/CM NSEQ 5 EFFN 2.182617 CKSUM 1013864841 STATS LOCAL MSV -7.8023 0.71869 STATS LOCAL VITERBI -9.3757 0.71869 STATS LOCAL FORWARD -3.5098 0.71869 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23574 1.19883 1.50011 1.68887 1.38629 1.38629 1.38629 1.38629 0.02819 4.88537 3.90019 0.39730 1.11515 0.00000 * 1 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 2 1.55648 2.42185 0.53168 2.18261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 3 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 4 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 5 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 6 1.57479 2.43181 0.52171 2.19314 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 7 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 8 1.55648 2.42185 0.53168 2.18261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 9 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 10 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 11 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 12 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 13 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 14 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 15 2.08235 1.42427 2.19507 0.64755 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 16 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 17 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 18 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 19 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 20 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 21 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 22 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 23 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 24 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 25 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 26 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 27 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 28 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 29 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 30 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 31 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 32 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 33 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 34 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 35 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 36 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 37 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 38 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 39 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.16622 3.78023 2.03772 1.46634 0.26236 1.09861 0.40547 40 0.34694 2.45463 2.26203 2.27185 - A - - : 1.38629 1.38629 1.38629 1.38629 0.05249 3.66649 3.66649 1.46634 0.26236 0.30022 1.34959 41 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 42 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 43 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 44 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 45 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 46 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 47 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 48 1.55648 2.42185 0.53168 2.18261 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 49 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 50 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 51 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 52 2.17703 0.64787 2.29735 1.33584 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 53 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 54 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 55 2.18397 0.63645 2.30464 1.35308 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 56 1.53385 0.67838 2.15567 1.82614 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 57 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 58 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 59 2.07748 0.90004 2.19268 1.03118 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 60 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 61 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 62 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 63 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.16622 3.78023 2.03772 1.46634 0.26236 1.09861 0.40547 64 2.27706 2.67285 0.29588 2.47120 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05249 3.66649 3.66649 1.46634 0.26236 0.30022 1.34959 65 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 66 2.17703 0.64787 2.29735 1.33584 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 67 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 68 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 69 2.45638 2.92257 0.22964 2.72361 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 70 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 71 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 72 2.38969 2.18889 2.49196 0.33750 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 73 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 74 2.54707 0.30741 2.67274 2.14324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04671 3.78023 3.78023 1.46634 0.26236 1.09861 0.40547 75 0.25713 2.70567 2.52338 2.52925 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //