# STOCKHOLM 1.0
#=GF ID TCL6_3
#=GF AC RF02193
#=GF DE T-cell leukemia/lymphoma 6 conserved region 3
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 40.0
#=GF NC 39.7
#=GF TC 40.3
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 23.67 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 10588720
#=GF RT Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly
#=GF RT clustered genes.
#=GF RA Hallas C, Pekarsky Y, Itoyama T, Varnum J, Bichi R, Rothstein JL, Croce CM
#=GF RL Proc Natl Acad Sci U S A. 1999;96:14418-14423.
#=GF RN [2]
#=GF RM 10851082
#=GF RT Identification of the TCL6 genes within the breakpoint cluster region on
#=GF RT chromosome 14q32 in T-cell leukemia.
#=GF RA Saitou M, Sugimoto J, Hatakeyama T, Russo G, Isobe M
#=GF RL Oncogene. 2000;19:2796-2802.
#=GF WK TCL6
#=GF SQ 26

AB035343.1/1888-2024         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035339.1/2-136             --GAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035342.1/1888-2024         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035338.1/1729-1865         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035332.1/3311-3447         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035335.1/1888-2024         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035346.2/12058-12194       GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035334.1/2343-2479         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035340.1/2276-2412         AAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035341.1/2343-2479         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AB035337.1/1534-1670         GAGAGACAACAGAUUUGCAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCUUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AADA01358963.1/15591-15461   GAGAGACAACAGAUUUACAUCCCAGACA------CACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCGAGUCACGUCCUUUUUUCCCUC--------C-UUCUCCUU---CUUGGAGU--UACAACA--GAAGCUGGGGAGGUGAG-AGUGCAG
AAWR02019957.1/59171-59308   GAGAGACAACAGAUUUACAUCCCAGACACUUUC---CCUGGGCCAGAGCAGCUGCCACUGCAGAAUCUACUCACGUACUUUUUUUCUUC--------C-CUCUCCUU---CUUGGAGUUGAUCAGAAUAGAAGUUGGGGAGGUGAG-GGGGGAG
AAPY01359119.1/3022-3161     GAGAGACGACGGAUUUACAUCCCAGACACAUUCGCUCUGGGCCAAGAGCAGCUGCCCUUGCAGAGUCCAGUCACGUACGUUCCCCCUCC--------C-U-CUCCUG---UUAGGAAUUGUCCAGAACAGAAGCUGGGGAGGUGGG-GGUGGAG
ABRN01352191.1/972-1117      GAGAGACUGUGGAUUUACAUCGCAGACGCUGUCACACUGGGCCAGGAGCAGCUGCCGUUGCAGAAUCUAGACACGUACUUUCCCCCCCUUC---CUCC-UUCUCCUU---CUUGGAGUUGGUUGGAAGAGAAAUCGGGGAGGUGAG-GGGGCAG
AANG01662174.1/1402-1536     CAAAGACAACGGAUUUACAUCCCAGACACAUUCACGCAGGGCCCAGAGCAGCUGCCACUGUGGAAUCGAGUCGUGUAUUUUCCAC------------U-CCGCCCUU---CUUGGGGUUGAUCAGAA--GACAGGUUGGGGCGGCG-AGGGUGG
AAGV020445990.1/452-570      GAGAGACAACAGAUUUAUAUCCCAGACACAUUCACCCUGGCCCCAGAGCCACUGCCACUGCAGGAUUGAGGCACAUACUUCUAUUGGCU--------CCUUCUUCUU---CCUGGAGU----------------UG-------GUC-AGAGCAG
AAFC03028527.1/71522-71660   GAGAGACCGGGGAUUUACCUCCCAGGCACGGUCACGCUGGGCCAGGAGCAGCCGCUAUUACAGAAUCUAGGCACGUACUCUCCCCAUCC--------U-CCUUCUUC---C-UGGAGUCAUUCAGAA--GAGAAGUUGGGGCUCUGAAGGGCAG
CT867964.5/119213-119356     --GAGAUGACGGAUUUACAUCCCAGACAGUGUCACUCGGGUCGAGGAGCAGCUGCUGUUGCAGAAUCUAGGCACGUAUUUCUUUCCCCUCCUUCCUUC-UUCUCCUU---CUUGGAGGCAGUCAGAA--GAGAAGG-UGGGAGGUG-AUGGGGA
ABDC01193447.1/3633-3742     GAGAGACAGCGGAUUUACAUCC--------------------------CAGCUGCCGUUGCAGAAUCUAGUCAUGUACUUUUUUCCCUUU------CC-UUCUCUUU---CUCGGA----GUCAGAA--CAGA-GCUGAGGGGGCG-AAGGAGG
AAFR03013275.1/215008-215127 UAGUGACAAUAGAUUUACAUCCCAGGCACAAUCACACUGCAGCUAC-GUGGCUGCCUUUGCAGAACCGAGUCACACAUUUUUUUCUUUC----------UCCUUUCUAAGUGUGAAAU--UUUGAAA--UAGAAU-------------------
AAIY01060236.1/7545-7673     GAGAGACCAGGGAUUUACUUUCCAG-CACAUCCCCACUGGGCUAAGUAGAGAUGCCUUUCCAGAAUCUCAUUA---------UUUUUUCCCC--CUCC-UCCUCUCC---CUUGGAGUUGUUCAGAU--CAGAAGGCUCCAGCUUA-A------
AANU01198094.1/8666-8529     GAGAGACAACAGAUUUACAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAUUCCAGUCAUGUCCUUUUUUUCCCU-------CC-UUCUCCUU---CUUGGAGU--UACAAUA--GAAGCUGGGGAGGUGAG-AGUGCAG
AAGU03025848.1/13024-13167   GAGAGACAACGGGUUUAUAUCC-AG-CACACUCACACCAGGCCAGGAGCAGAUGCCCUUGCUCAGUCUCCUCAGGUAUUAGGUUUUUUUUUUUUUCCC-CUCUCCUU---CUUGCAGCUGGUCAGAU--CAGAAGG-UCCAGAUUA-AUGGGGA
AAGW02069995.1/9645-9789     GAGAGACGCCAGAUUUAUAUCCCAGACACACGCUCCCCGGGCUAGGAGCGGCUGCCGCUGCAGAGUCGAGUCACGGACUGCCUCUGCCUUG---UCUU-CCUUCCCU--UCUUGGAGCUGGUCAGAG--CAGGAGUCGGGGGCGGG-GGUAAGG
AAQR03046300.1/16845-16972   GAGA-------G----ACAUCCCAGACACAUUCACACUGGGCCAAGAGCAGCUGCCAUUGCAGAAUCCAGCCAUGUCCUUCCGUCACAC--------C-UUCUCUUU---CUUGGAGUUAGUCAGAA--CAGAAGCUGGGGAUGUG-GGGGAAG
#=GC SS_cons                 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::........:.::::::::...:::::::::::::::::..:::::::::::::::::.:::::::
#=GC RF                      GAGAGACaacgGAUUUACAUCCCAGACACauUCaCaCuGGGCCaaGAGCaGCUGCCaUUGCAGAaUCgAGuCAcGUacUuuuuuccuuc........C.UuCUCCUU...CUUGGAGUuGuuCAGaa..gAggauggGGgGGuGuG.aGgGcaG
//
