INFERNAL1/a [1.1.5 | Sep 2023] NAME ST7-OT3_4 ACC RF02186 DESC ST7 overlapping transcript 3 conserved region 4 STATES 223 NODES 75 CLEN 73 W 158 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 21:37:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02186/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 2.613281 CKSUM 366234544 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 93.00 NC 56.30 EFP7GF -9.1224 0.71871 ECMLC 0.72705 -9.82945 -0.97998 1600000 747194 0.001606 ECMGC 0.39659 -20.38946 -6.62821 1600000 93808 0.004264 ECMLI 0.62252 -8.88157 0.28894 1600000 361827 0.003317 ECMGI 0.45652 -10.79763 0.08288 1600000 57450 0.006963 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 158 243 -7.204 -7.411 -0.044 -5.825 IL 1 1 2 1 4 1 28 160 246 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 28 160 245 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 27 158 244 -5.589 -0.061 -5.589 -1.072 -0.813 1.328 -1.170 D 4 2 3 5 3 0 23 155 240 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 29 165 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 26 157 242 -5.589 -0.061 -5.589 0.169 -1.444 1.027 -1.089 D 7 5 3 8 3 0 22 154 239 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 28 163 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 26 156 241 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 10 8 3 11 3 0 21 153 237 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 27 162 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 25 155 239 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 13 11 3 14 3 0 20 151 236 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 27 161 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 24 153 238 -5.589 -0.061 -5.589 0.700 -0.882 -0.889 0.370 D 16 14 3 17 3 0 20 150 235 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 26 159 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 23 152 236 -5.589 -0.061 -5.589 -1.460 1.318 -1.656 -0.275 D 19 17 3 20 3 0 19 149 233 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 25 158 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 23 151 235 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 22 20 3 23 3 0 18 147 232 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 24 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 22 149 234 -5.589 -0.061 -5.589 -0.790 -0.957 0.556 0.522 D 25 23 3 26 3 0 17 146 230 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 24 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 21 148 232 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 28 26 3 29 3 0 17 145 229 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 23 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 20 147 231 -3.473 -0.170 -5.589 -1.699 -1.367 -1.861 1.599 D 31 29 3 32 3 0 16 144 228 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 21 147 231 -4.169 -0.083 -11.813 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - A - - - ML 33 32 3 35 3 1 20 146 230 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 34 32 3 35 3 0 15 142 226 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 21 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - C - - - ML 36 35 3 38 3 1 19 144 228 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 37 35 3 38 3 0 14 141 225 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 21 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - C - - - ML 39 38 3 41 3 1 18 143 227 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 40 38 3 41 3 0 14 140 223 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 20 149 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - A - - - ML 42 41 3 44 3 1 18 142 225 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 43 41 3 44 3 0 13 138 222 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 19 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - a - - - ML 45 44 3 47 3 1 17 140 224 -5.589 -0.061 -5.589 0.949 -1.266 0.168 -0.916 D 46 44 3 47 3 0 12 137 220 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 19 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 48 47 3 50 3 1 16 139 222 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 49 47 3 50 3 0 12 136 219 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 18 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - U - - - ML 51 50 3 53 3 1 15 138 221 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 52 50 3 53 3 0 11 134 217 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 17 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - G - - - ML 54 53 3 56 3 1 15 136 219 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 55 53 3 56 3 0 10 133 216 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 16 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - G - - - ML 57 56 3 59 3 1 14 135 218 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 58 56 3 59 3 0 9 132 214 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 16 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 60 59 3 62 3 1 13 134 216 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 61 59 3 62 3 0 9 130 213 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 15 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - G - - - ML 63 62 3 65 3 1 13 132 215 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 64 62 3 65 3 0 8 129 211 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 14 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - U - - - ML 66 65 3 68 3 1 12 131 213 -5.589 -0.061 -5.589 -1.130 0.072 -1.303 1.061 D 67 65 3 68 3 0 7 128 210 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 14 137 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - U - - - ML 69 68 3 71 3 1 11 130 212 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 70 68 3 71 3 0 7 126 208 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 13 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - - - ML 72 71 3 74 3 1 11 128 210 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 73 71 3 74 3 0 6 125 207 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 12 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 75 74 3 77 3 1 10 127 209 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 76 74 3 77 3 0 5 124 205 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 12 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 78 77 3 80 3 1 9 125 207 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 79 77 3 80 3 0 5 122 204 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 11 132 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - C - - - ML 81 80 3 83 3 1 9 124 206 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 82 80 3 83 3 0 4 121 202 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 10 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - U - - - ML 84 83 3 86 3 1 8 123 204 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 85 83 3 86 3 0 3 119 201 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 10 129 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - G - - - ML 87 86 3 89 3 1 8 121 203 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 88 86 3 89 3 0 3 118 199 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 9 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 90 89 3 92 3 1 7 120 201 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 91 89 3 92 3 0 2 117 197 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 8 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 93 92 3 95 3 1 6 119 199 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 94 92 3 95 3 0 2 115 196 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 8 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 96 95 3 98 3 1 6 117 198 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 97 95 3 98 3 0 1 114 194 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 7 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 99 98 3 101 3 1 5 116 196 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 100 98 3 101 3 0 1 113 193 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 102 101 3 104 3 1 5 114 195 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 103 101 3 104 3 0 0 111 191 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 6 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - a - - - ML 105 104 3 107 3 1 4 113 193 -5.589 -0.061 -5.589 0.681 -1.260 0.531 -0.904 D 106 104 3 107 3 0 0 110 190 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 108 107 3 110 3 1 4 112 192 -5.589 -0.061 -5.589 -0.429 -0.986 -1.171 1.207 D 109 107 3 110 3 0 0 108 188 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 5 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - g - - - ML 111 110 3 113 3 1 3 110 190 -5.589 -0.061 -5.589 -0.879 0.435 0.568 -0.686 D 112 110 3 113 3 0 0 107 186 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 5 117 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - - - ML 114 113 3 116 3 1 3 109 188 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 115 113 3 116 3 0 0 105 185 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 4 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 117 116 3 119 3 1 2 107 187 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 118 116 3 119 3 0 0 104 183 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 4 114 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - C - - - ML 120 119 3 122 3 1 2 106 185 -5.589 -0.061 -5.589 -1.281 1.090 -1.465 0.135 D 121 119 3 122 3 0 0 103 181 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 3 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - U - - - ML 123 122 3 125 3 1 2 105 184 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 124 122 3 125 3 0 0 101 180 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 3 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 126 125 3 128 3 1 1 103 182 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 127 125 3 128 3 0 0 100 178 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - C - - - ML 129 128 3 131 3 1 1 102 180 -5.589 -0.061 -5.589 -1.458 1.315 -1.653 -0.269 D 130 128 3 131 3 0 0 98 177 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 132 131 3 134 3 1 1 100 179 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 133 131 3 134 3 0 0 97 175 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 2 107 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - C - - - ML 135 134 3 137 3 1 1 99 177 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 136 134 3 137 3 0 0 95 173 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - U - - - ML 138 137 3 140 3 1 1 97 175 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 139 137 3 140 3 0 0 94 171 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - G - - - ML 141 140 3 143 3 1 1 96 174 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 142 140 3 143 3 0 0 92 170 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - C - - - ML 144 143 3 146 3 1 1 94 172 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 145 143 3 146 3 0 0 91 168 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - C - - - ML 147 146 3 149 3 1 1 93 170 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 148 146 3 149 3 0 0 89 166 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - U - - - ML 150 149 3 152 3 1 1 91 168 -5.589 -0.061 -5.589 -1.699 -1.367 -1.861 1.599 D 151 149 3 152 3 0 0 88 164 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - A - - - ML 153 152 3 155 3 1 1 90 167 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 154 152 3 155 3 0 0 86 163 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - C - - - ML 156 155 3 158 3 1 1 88 165 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 157 155 3 158 3 0 0 85 161 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - C - - - ML 159 158 3 161 3 1 1 87 163 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 160 158 3 161 3 0 0 83 159 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 94 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - A - - - ML 162 161 3 164 3 1 1 85 161 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 163 161 3 164 3 0 0 82 157 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - C - - - ML 165 164 3 167 3 1 1 84 159 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 166 164 3 167 3 0 0 80 155 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - C - - - ML 168 167 3 170 3 1 1 82 158 -5.589 -0.061 -5.589 -1.951 1.640 -2.151 -1.326 D 169 167 3 170 3 0 0 78 153 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - A - - - ML 171 170 3 173 3 1 1 80 156 -5.589 -0.061 -5.589 1.249 -1.419 -0.362 -1.087 D 172 170 3 173 3 0 0 77 152 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 88 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - G - - - ML 174 173 3 176 3 1 1 79 154 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 175 173 3 176 3 0 0 75 150 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - G - - - ML 177 176 3 179 3 1 1 77 152 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 178 176 3 179 3 0 0 73 148 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - a - - - ML 180 179 3 182 3 1 1 75 150 -5.589 -0.061 -5.589 0.510 0.509 -1.000 -0.615 D 181 179 3 182 3 0 0 72 146 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - c - - - ML 183 182 3 185 3 1 1 74 148 -5.589 -0.061 -5.589 0.507 0.512 -1.000 -0.615 D 184 182 3 185 3 0 0 70 143 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - A - - - ML 186 185 3 188 3 1 1 72 146 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 187 185 3 188 3 0 0 68 141 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - A - - - ML 189 188 3 191 3 1 1 70 144 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 190 188 3 191 3 0 0 66 139 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 65 - G - - - ML 192 191 3 194 3 1 1 68 141 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 193 191 3 194 3 0 0 64 137 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 66 - g - - - ML 195 194 3 197 3 1 1 67 139 -5.589 -0.061 -5.589 -0.343 -0.247 0.780 -0.617 D 196 194 3 197 3 0 0 62 134 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 67 - g - - - ML 198 197 3 200 3 1 1 65 137 -5.589 -0.061 -5.589 0.441 -1.325 0.792 -0.968 D 199 197 3 200 3 0 0 60 132 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 68 - G - - - ML 201 200 3 203 3 1 1 63 134 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 202 200 3 203 3 0 0 58 129 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 69 - A - - - ML 204 203 3 206 3 1 1 60 132 -5.589 -0.061 -5.589 1.713 -2.229 -1.970 -1.985 D 205 203 3 206 3 0 0 55 126 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 70 - G - - - ML 207 206 3 209 3 1 1 58 129 -5.589 -0.061 -5.589 0.163 -1.447 1.032 -1.092 D 208 206 3 209 3 0 0 53 123 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 71 - c - - - ML 210 209 3 212 3 1 1 56 126 -5.589 -0.061 -5.589 -0.366 0.667 -0.952 0.164 D 211 209 3 212 3 0 0 49 119 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 72 - G - - - ML 213 212 3 215 3 1 1 53 122 -5.589 -0.061 -5.589 0.157 -1.450 1.036 -1.095 D 214 212 3 215 3 0 0 45 114 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 73 - G - - - ML 216 215 3 218 3 1 1 48 118 -5.589 -0.061 -5.589 -1.757 -2.517 1.730 -2.233 D 217 215 3 218 3 0 0 32 101 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 74 - U - - - ML 219 218 3 221 2 1 1 1 1 * 0.000 -1.699 -1.367 -1.861 1.599 D 220 218 3 221 2 0 0 0 0 * 0.000 IL 221 221 3 221 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 74 ] - - - - - - E 222 221 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ST7-OT3_4 ACC RF02186 DESC ST7 overlapping transcript 3 conserved region 4 LENG 73 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 21:37:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02186/CM NSEQ 8 EFFN 2.613281 CKSUM 366234544 STATS LOCAL MSV -8.4132 0.71871 STATS LOCAL VITERBI -9.1430 0.71871 STATS LOCAL FORWARD -3.7976 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43978 1.45569 1.25015 1.41339 1.38629 1.38629 1.38629 1.38629 0.02526 4.99343 4.00825 0.39730 1.11515 0.00000 * 1 2.12947 1.94968 0.46568 2.19757 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 2 1.26926 2.38722 0.67424 2.14103 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 3 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 4 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 5 0.90095 1.99774 2.00264 1.12949 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 6 2.39856 0.47285 2.53398 1.57703 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 7 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 8 1.93370 2.04981 1.00058 1.02453 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 9 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 10 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.11750 2.40700 3.87396 0.05722 2.88928 1.09861 0.40547 11 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 12 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 13 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 14 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 15 0.72836 2.26353 1.27012 2.02104 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 16 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 17 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 18 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 19 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 20 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 21 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 22 2.16952 1.33623 2.28952 0.65082 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 23 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 24 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 25 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 26 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 27 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 28 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 29 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 30 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 31 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 32 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 33 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 34 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 35 0.91412 2.25999 1.01828 2.01319 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 36 1.68350 2.06962 2.19804 0.54987 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 37 1.99575 1.08456 0.99254 1.86172 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 38 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 39 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 40 2.27391 0.63104 2.40165 1.29286 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 41 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 42 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 43 2.39667 0.47476 2.53197 1.57290 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 44 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 45 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 46 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 47 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 48 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 49 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 50 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 51 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 52 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 53 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 54 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 55 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 56 2.73895 0.24929 2.87746 2.30528 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 57 0.52040 2.36959 1.63728 2.13971 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 58 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 59 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 60 1.03285 1.03357 2.07916 1.81255 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 61 1.03458 1.03166 2.07948 1.81267 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 62 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 63 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 64 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 65 1.62396 1.55728 0.84587 1.81406 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 66 1.08044 2.30454 0.83723 2.05696 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 67 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 68 0.19885 2.93149 2.75150 2.76186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 69 1.27364 2.38940 0.67093 2.14327 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 70 1.63998 0.92429 2.04638 1.27296 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 71 1.27729 2.39122 0.66818 2.14514 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 72 2.60418 3.13066 0.18732 2.93434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04244 3.87396 3.87396 1.46634 0.26236 1.09861 0.40547 73 2.56416 2.33366 2.67594 0.27808 - U - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //