# STOCKHOLM 1.0
#=GF ID ST7-OT3_3
#=GF AC RF02185
#=GF DE ST7 overlapping transcript 3 conserved region 3
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 49.4
#=GF TC 58.4
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.33 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 12213198
#=GF RT The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a
#=GF RT complex multi-transcript system.
#=GF RA Vincent JB, Petek E, Thevarkunnel S, Kolozsvari D, Cheung J, Patel M,
#=GF RA Scherer SW
#=GF RL Genomics. 2002;80:283-294.
#=GF WK ST7-OT3
#=GF SQ 21

AF400044.1/462-579         GCUGUAUU-ACGUAAUU-AUCAUCUUCUCUGAGGGAGGAAAAAAAGUAGCUGAGAG-CCACUUUCAGUCCC-----GCUAUU-AAGUACAUUUUGGCCUCU-AAGAAAC--U--U--CGUGUGGUUCACCUCAG
AC148137.3/39310-39423     UGUUUACC--UGUAUCUAACUACCUGCUCUGUGAUAGGCAUGAAGC----CAAGAG-GCACUUUCACUCUC-----GCUAUU-AAGUACAUUUUGACCUCU-AAGAAAC--U--U--AUUGUAGUUUACAUCAG
ABDC01046495.1/23296-23409 GACUUACC--UGUAUUUGAGUACCUGCUAUGUGAUAGGCACAUGGC----UGAGGG-CCAUUUGCAGUCUC-----ACUAUU-AAGCACACUUUGACCUCU-AAGAAAC--U--U--CCUGCAGUUCACAUCAG
AC183695.3/20785-20898     UAUUUACC--UAUAUUUAACUACCUGCUCUGUGAUAGGCAUGAAGC----CAAGAG-GCAUUUUCACUCUC-----GCUAUU-AAGUACAUUUUGACCGCU-AAGGAAC--U--U--ACUGUAAUUUACCUCAG
AC165192.3/17236-17349     GACUUACG--UGUAUUUCAGUACCUGCUGUGUGAUAGGCACACGGC----UGAGGG-CCAUUUACAGUCUC-----ACUAUU-AAGCACACUUUGACCUCU-AAGAAAC--U--U--CCUGCAGUUCACAUCAG
AC151541.4/56247-56360     UAUUUACC--UAUAUUUAACUACCUGCUCUAUGAUAGGCAUGAAAC----CAAGAG-GCACUUUCACUCUC-----GCUAUU-AAGUACAUUUUGACUGCU-AAGAAAC--U--U--ACUGUAAUUUACCUCAG
AC152017.3/31067-31181     UAUUUACC--UAUGUUUAGCUACCUGCUCUGUGUUAGGCAUGAAGC----UGAGAG-GCACUUUGACUCUC-----GCUAUUUAAGUACAUUUUGACCUCU-AAGAGAC--U--U--AUUGUAAUUUACCUCAG
ABRT010121725.1/3039-3153  AAUUUACC--UGUGUUUGAAUGCCUGCUCUAUGAUAGACAUGUGAA---AUGAGUG-CCAUUUUCAGUCUC-----ACUAUU-GAGCACAUUUUGACCUCU-AAGAAAC--U--U--UCUGCAAUUCACAUCAU
ABRN01248940.1/201-319     GACUUACC--CGUAUUUGAGUACCUACUACGUGAUAGGCACGUGGC----UGAGGG-CCAUUUUCAGUUUCUUGAUAUUAUA-AAACACAUUUUGACCUCU-AGGAAAC--C--U--CCUGCAGUUCACAUCAG
AC123544.4/18033-18144     GACUUACA--UGUAUUUGAGUACUCGCUGUGUGACAGGCACACGGC----UGAGGG-CCAUUUACAGUCUC-----ACUGUU-AAGCAC--UUUGACUCCU-AAGAAAC--U--U--CCUACAGUUCACAUCAU
ACBE01081553.1/2004-1886   UAUUUACC--UAUAUUUGAGUACCUGCUAUGUGAUAGGCACAUUGC----UGAGGG-CUAUUUUCAGUUUCUCGAUAUUAUA-AAGUGCAUUUUGACCUCU-GGGAAAC--U--U--CAUACAAUUUACAUCAG
AC183690.3/91042-91159     AGUUUACC--CGUGUUUGAGUACCUGUUCCGUGAUAGAUAGGAAGC----UGAGAG-CCAGUUUCUGUUUCU---UGAUACU-AAACAUAUUUUAACCUCU-AAGAAACUCU--U--GCUGCAGUUCAUAUUAG
ABRR01087160.1/113-232     GAUUUACC--UGUGUUCGAGUA-CUGCUUUGUGAUAGGCAAGUCGC----UGAGGG-CCAUUUUGAGUUUCUUGUUAUUAUA-AAGCACAUUUCAACCUCU-AAGAAAC--UAUU--CCUGCGGUGCACAGCAG
ABRO01336613.1/477-594     AAUUCACC--UGUAUUUGAGUAACUGUUGUAUGAUAGAUAUGUAGC----UAAGGG-UCACGUUCAGUCUCU---GGAUAUU-AAGCACAUUUUUGUCUCU-AAAAAACGAU--U--CACGCUGUUUAUACCAG
AC182032.3/109921-110038   GAUUUACC--UGUGUUUGAGUACCUGCUCUGUGGUAGGUAUCUAGA----UUAGGG-UCAAUUUCAAUCUCU---UGACAUU-AAGCACAUCCUAACUUGU-AAGAAAC--UAUU--CCUACAAUUCAUAUUGG
AC145508.3/71789-71910     AUAACACC--UCUUUUUGAGGAAUUGCUCUGCGAUAGAAACAUAUG---CUAAGGU-CCACUUUCCAUUUCUGGAUAUUAUA-AAGCACAUUUUGACCUCU-AAGAAACCAU--U--CUUGAAAUUCACAUCAG
AC068561.2/52899-53018     UAUUUAGGGUUUUCCUGAAGUAUCUGCUCUGUGGUAGGUAUUUAGC----UGUGGGUCCAUUUUCAGUCUGU---UGAUAUU-AAGCACAUUUAG-CCUCU-AAGAAAU--UAAU--CCUGCAGCUCACAUCUG
AC087066.3/103003-103121   UAUUUAGGGCUUCCCUGAAUUAUCUGCUCUGUGGUAGGUAUUUAGC----UGUGGG-UCCAUUUCAGUCUGU---UGAUAUU-AAGCACAUUUAG-CCUCU-AAGAAAU--UAAU--CCUGCCACUCACAUCUG
AC139341.3/136641-136758   GAUUUACC--UGCACUG-AGUUUCUGCUAUGUGACAGACACACUGC----UGAAUG-ACAGUUUUAGCUUAUAAAUACUAUG--ACUGCAU-UUGACCUCU-AACAAAC--U--UUCCCUCCAAUUUAUAUUAG
AC188936.4/172016-172135   GAUUUGCC--UCUAUUUGAGUACCUGCUAUGCGAUAGGCACAUGGC----UGAGGG-CUAUUUUCAGUUUCUCGAUAUUAUA-AAGCACAUUUUGACCUGGGAAAACUA--U--U--CAUACAGGGUACUACAG
AC147583.3/3991-4099       AAUUUAGG--AGUAAAU-----GCAGUUAUGUGACAGGCACACAGC----GGAAGG-CCACAUCCCAUCGC-----ACUGUU-AAGCACACUUUGACCUCU-AAGGCAC--U--U--CCUGCAGUUCCCAUCAG
#=GC SS_cons               ::::::::..::::::::::::::::::::::::::::::::::::....::::::.:::::::::::::::...:::::::.::::::::::::::::::.:::::::..:..:..:::::::::::::::::
#=GC RF                    gaUUUACc..UgUauUUGAgUAcCUGCUcUGUGaUAGGcAuguaGC....UGAGgG.cCAuUUUCAGUcUCU...UgcUAUu.AAGCACAUUUUGACCUCU.AAGAAAC..U..U..ccUGCaGUUcACaUCAG
//
