INFERNAL1/a [1.1.5 | Sep 2023] NAME ST7-OT3_1 ACC RF02183 DESC ST7 overlapping transcript 3 conserved region 1 STATES 241 NODES 81 CLEN 79 W 160 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 03:54:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02183/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 3.995605 CKSUM 369985618 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.30 NC 44.70 EFP7GF -8.7208 0.71857 ECMLC 0.62130 -9.58322 0.39384 1600000 590585 0.002032 ECMGC 0.38385 -16.11179 -2.38920 1600000 77563 0.005157 ECMLI 0.47278 -9.71643 2.33582 1600000 357963 0.003352 ECMGI 0.41193 -8.22762 3.77493 1600000 56144 0.007125 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 160 244 -7.614 -7.821 -0.033 -6.235 IL 1 1 2 1 4 3 33 162 246 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 33 162 246 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 3 33 161 245 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 4 2 3 5 3 0 28 157 241 -11.551 -1.585 -0.585 IL 5 5 3 5 3 5 35 167 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 3 32 159 243 -5.953 -0.047 -5.953 1.721 -2.546 -1.622 -2.270 D 7 5 3 8 3 0 27 156 240 -11.551 -1.585 -0.585 IL 8 8 3 8 3 4 34 166 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 3 31 158 242 -5.953 -0.047 -5.953 1.068 -0.770 -0.685 -0.524 D 10 8 3 11 3 0 26 155 239 -11.551 -1.585 -0.585 IL 11 11 3 11 3 4 33 164 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 2 31 157 240 -5.953 -0.047 -5.953 0.023 -1.175 1.056 -1.115 D 13 11 3 14 3 0 26 154 237 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 32 163 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 30 156 239 -5.953 -0.086 -4.590 -0.429 -0.589 1.008 -0.783 D 16 14 3 17 3 0 25 152 235 -11.551 -1.585 -0.585 IL 17 17 3 17 3 3 32 162 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 2 30 154 238 -5.916 -0.049 -5.916 1.207 -1.693 -0.015 -1.347 D 19 17 3 20 3 0 24 150 234 -12.159 -2.193 -0.356 IL 20 20 3 20 3 3 31 161 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 2 29 153 236 -5.916 -0.049 -5.916 -0.618 0.662 -1.218 0.418 D 22 20 3 23 3 0 24 149 232 -12.159 -2.193 -0.356 IL 23 23 3 23 3 3 31 160 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 2 29 152 235 -5.916 -0.049 -5.916 -0.298 0.342 -0.750 0.405 D 25 23 3 26 3 0 23 148 231 -12.159 -2.193 -0.356 IL 26 26 3 26 3 2 30 158 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 28 151 234 -5.916 -0.049 -5.916 -1.806 -0.767 -2.010 1.525 D 28 26 3 29 3 0 23 147 229 -12.159 -2.193 -0.356 IL 29 29 3 29 3 2 29 157 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - g - - - ML 30 29 3 32 3 1 27 149 232 -5.916 -0.049 -5.916 -0.025 -0.509 0.802 -0.810 D 31 29 3 32 3 0 22 145 228 -12.159 -2.193 -0.356 IL 32 32 3 32 3 2 29 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 26 148 231 -5.916 -0.049 -5.916 -2.366 -1.917 -2.551 1.753 D 34 32 3 35 3 0 22 144 227 -12.159 -2.193 -0.356 IL 35 35 3 35 3 2 28 155 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 26 147 230 -5.916 -0.049 -5.916 1.285 -1.313 -0.927 -0.656 D 37 35 3 38 3 0 21 143 226 -12.159 -2.193 -0.356 IL 38 38 3 38 3 2 27 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 25 146 228 -5.916 -0.049 -5.916 -1.943 -1.086 -2.151 1.606 D 40 38 3 41 3 0 21 143 225 -12.159 -2.193 -0.356 IL 41 41 3 41 3 2 26 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 24 144 227 -5.916 -0.049 -5.916 -0.381 -2.204 1.454 -1.860 D 43 41 3 44 3 0 21 142 224 -12.159 -0.830 -1.193 IL 44 44 3 44 3 1 25 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 23 143 225 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 46 44 3 47 3 0 19 140 222 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 24 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 22 142 224 -5.953 -0.144 -3.670 1.556 -1.795 -1.887 -0.996 D 49 47 3 50 3 0 19 139 221 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 24 148 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 22 140 223 -5.860 -0.051 -5.860 1.473 -1.901 -0.687 -1.580 D 52 50 3 53 3 0 18 138 220 -12.746 -0.497 -1.780 IL 53 53 3 53 3 1 23 147 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 21 139 221 -5.953 -0.047 -5.953 -1.923 1.385 -2.143 -0.156 D 55 53 3 56 3 0 16 136 218 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 22 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 20 138 220 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 58 56 3 59 3 0 15 135 216 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 22 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 19 137 218 -5.953 -0.047 -5.953 -0.834 1.022 -1.447 0.060 D 61 59 3 62 3 0 15 134 215 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 21 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 19 135 217 -5.953 -0.047 -5.953 1.695 -2.462 -1.470 -2.179 D 64 62 3 65 3 0 14 132 214 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 20 142 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 18 134 215 -3.900 -0.125 -5.953 1.858 -3.174 -2.872 -2.962 D 67 65 3 68 3 0 13 131 213 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 18 134 215 -4.092 -0.088 -11.736 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 69 68 3 71 3 1 17 133 214 -5.953 -0.047 -5.953 -0.571 -2.365 1.530 -2.026 D 70 68 3 71 3 0 13 130 211 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 19 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 72 71 3 74 3 1 16 132 213 -5.953 -0.047 -5.953 1.523 -2.072 -0.759 -1.753 D 73 71 3 74 3 0 12 129 210 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 18 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 75 74 3 77 3 1 16 130 212 -5.953 -0.047 -5.953 -2.444 -1.982 -2.631 1.766 D 76 74 3 77 3 0 11 127 208 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 17 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 78 77 3 80 3 1 15 129 210 -5.953 -0.047 -5.953 -0.889 -2.538 1.619 -2.210 D 79 77 3 80 3 0 11 126 207 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 16 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 81 80 3 83 3 1 14 128 209 -5.953 -0.075 -4.860 -1.423 -2.822 1.727 -2.517 D 82 80 3 83 3 0 10 125 206 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 16 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 14 127 207 -5.927 -0.048 -5.927 -2.650 1.783 -2.886 -1.921 D 85 83 3 86 3 0 9 124 205 -12.014 -0.954 -1.048 IL 86 86 3 86 3 1 15 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - a - - - ML 87 86 3 89 3 1 13 125 206 -5.953 -0.047 -5.953 0.973 -0.351 -0.628 -0.722 D 88 86 3 89 3 0 8 122 202 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 15 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - A - - - ML 90 89 3 92 3 1 12 124 204 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 91 89 3 92 3 0 8 121 201 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 14 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 93 92 3 95 3 1 12 123 203 -5.953 -0.047 -5.953 1.701 -2.481 -1.504 -2.200 D 94 92 3 95 3 0 7 119 200 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 13 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 96 95 3 98 3 1 11 121 201 -5.953 -0.047 -5.953 -0.932 -1.706 1.522 -1.746 D 97 95 3 98 3 0 6 118 198 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 13 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 11 120 200 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 100 98 3 101 3 0 6 117 197 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 12 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - a - - - ML 102 101 3 104 3 1 10 119 199 -5.953 -0.047 -5.953 0.633 -0.571 -0.008 -0.357 D 103 101 3 104 3 0 5 115 195 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 11 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - G - - - ML 105 104 3 107 3 1 9 117 197 -5.953 -0.047 -5.953 -0.505 -0.946 1.173 -0.937 D 106 104 3 107 3 0 5 114 194 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 11 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 108 107 3 110 3 1 9 116 196 -5.953 -0.047 -5.953 -1.556 -1.064 -1.339 1.478 D 109 107 3 110 3 0 4 113 192 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 10 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 111 110 3 113 3 1 8 115 194 -5.953 -0.047 -5.953 -0.015 -2.047 1.298 -1.695 D 112 110 3 113 3 0 3 111 191 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 10 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - G - - - ML 114 113 3 116 3 1 8 113 193 -5.953 -0.047 -5.953 -1.045 -2.170 1.560 -1.539 D 115 113 3 116 3 0 3 110 189 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 9 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 117 116 3 119 3 1 7 112 191 -5.953 -0.047 -5.953 1.716 -2.528 -1.590 -2.251 D 118 116 3 119 3 0 2 109 188 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 8 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - - - ML 120 119 3 122 3 1 7 111 190 -5.953 -0.047 -5.953 1.373 -1.023 -1.492 -0.832 D 121 119 3 122 3 0 2 107 186 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 8 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 123 122 3 125 3 1 6 109 188 -5.953 -0.047 -5.953 -0.870 -2.087 1.515 -1.476 D 124 122 3 125 3 0 1 106 185 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 7 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - G - - - ML 126 125 3 128 3 1 6 108 187 -5.953 -0.047 -5.953 0.138 -1.960 1.210 -1.606 D 127 125 3 128 3 0 1 105 183 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 7 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - A - - - ML 129 128 3 131 3 1 5 107 185 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 130 128 3 131 3 0 0 103 182 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 6 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 132 131 3 134 3 1 4 105 184 -5.953 -0.047 -5.953 1.625 -2.278 -1.137 -1.977 D 133 131 3 134 3 0 0 102 180 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 6 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 135 134 3 137 3 1 4 104 182 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 136 134 3 137 3 0 0 101 179 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 5 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - A - - - ML 138 137 3 140 3 1 4 102 181 -5.953 -0.047 -5.953 1.485 -1.659 -1.754 -0.767 D 139 137 3 140 3 0 0 99 177 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 5 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 141 140 3 143 3 1 3 101 179 -5.953 -0.047 -5.953 -0.827 -0.565 -1.027 1.182 D 142 140 3 143 3 0 0 98 175 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 4 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - U - - - ML 144 143 3 146 3 1 3 100 177 -5.953 -0.047 -5.953 -1.049 -1.342 -1.248 1.434 D 145 143 3 146 3 0 0 96 174 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 3 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - A - - - ML 147 146 3 149 3 1 2 98 176 -5.953 -0.047 -5.953 1.092 -0.826 -0.442 -0.817 D 148 146 3 149 3 0 0 95 172 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - A - - - ML 150 149 3 152 3 1 1 97 174 -5.953 -0.313 -2.483 1.558 -1.171 -1.903 -1.540 D 151 149 3 152 3 0 0 93 170 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 3 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - A - - - ML 153 152 3 155 3 1 1 96 173 -5.697 -0.118 -4.076 1.108 -1.418 -0.008 -1.072 D 154 152 3 155 3 0 0 90 167 -13.676 -3.710 -0.115 IL 155 155 3 155 3 1 3 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - c - - - ML 156 155 3 158 3 1 2 95 172 -5.638 -0.059 -5.638 -0.723 0.857 -1.159 0.182 D 157 155 3 158 3 0 0 90 166 -13.888 -3.922 -0.099 IL 158 158 3 158 3 1 3 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - U - - - ML 159 158 3 161 3 1 2 93 170 -5.638 -0.059 -5.638 -1.345 -1.198 -1.083 1.432 D 160 158 3 161 3 0 0 89 165 -13.888 -2.301 -0.327 IL 161 161 3 161 3 1 3 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - a - - - ML 162 161 3 164 3 1 2 92 168 -5.697 -0.057 -5.697 0.948 -0.666 -0.594 -0.362 D 163 161 3 164 3 0 0 88 164 -13.676 -3.710 -0.115 IL 164 164 3 164 3 1 2 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - A - - - ML 165 164 3 167 3 1 1 90 166 -5.697 -0.057 -5.697 1.767 -2.502 -2.238 -2.267 D 166 164 3 167 3 0 0 88 164 -13.676 -0.239 -2.710 IL 167 167 3 167 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - u - - - ML 168 167 3 170 3 1 1 89 165 -5.953 -0.047 -5.953 -0.735 0.064 -1.273 0.956 D 169 167 3 170 3 0 0 85 161 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 171 170 3 173 3 1 1 87 163 -5.953 -0.047 -5.953 -0.058 -2.072 1.321 -1.721 D 172 170 3 173 3 0 0 84 159 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - C - - - ML 174 173 3 176 3 1 1 86 161 -5.953 -0.047 -5.953 -2.284 1.633 -2.534 -0.944 D 175 173 3 176 3 0 0 82 157 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - C - - - ML 177 176 3 179 3 1 1 84 160 -5.953 -0.047 -5.953 -1.559 1.287 -1.397 -0.251 D 178 176 3 179 3 0 0 81 156 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - A - - - ML 180 179 3 182 3 1 1 83 158 -5.953 -0.047 -5.953 1.408 -1.906 -0.428 -1.573 D 181 179 3 182 3 0 0 79 154 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - G - - - ML 183 182 3 185 3 1 1 81 156 -5.953 -0.047 -5.953 -0.949 -1.982 1.485 -1.220 D 184 182 3 185 3 0 0 78 152 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - C - - - ML 186 185 3 188 3 1 1 80 154 -5.953 -0.047 -5.953 -1.458 1.296 -0.752 -0.770 D 187 185 3 188 3 0 0 76 150 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - A - - - ML 189 188 3 191 3 1 1 78 153 -5.953 -0.047 -5.953 1.586 -2.191 -0.980 -1.882 D 190 188 3 191 3 0 0 75 149 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 65 - G - - - ML 192 191 3 194 3 1 1 77 151 -5.953 -0.047 -5.953 -1.081 -2.640 1.663 -2.321 D 193 191 3 194 3 0 0 73 147 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 66 - U - - - ML 195 194 3 197 3 1 1 75 149 -5.953 -0.047 -5.953 -1.705 -0.345 -1.905 1.400 D 196 194 3 197 3 0 0 72 145 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 84 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 67 - U - - - ML 198 197 3 200 3 1 1 73 147 -5.953 -0.089 -4.512 -1.986 -1.070 -2.197 1.610 D 199 197 3 200 3 0 0 70 143 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 68 - C - - - ML 201 200 3 203 3 1 1 72 145 -5.913 -0.049 -5.913 -1.041 1.546 -2.159 -1.431 D 202 200 3 203 3 0 0 69 142 -12.203 -0.797 -1.238 IL 203 203 3 203 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 69 - A - - - ML 204 203 3 206 3 1 1 70 143 -5.953 -0.047 -5.953 1.269 -0.985 -0.782 -0.990 D 205 203 3 206 3 0 0 66 139 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 70 - G - - - ML 207 206 3 209 3 1 1 68 141 -5.953 -0.047 -5.953 -0.545 -1.728 1.326 -0.982 D 208 206 3 209 3 0 0 65 137 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 71 - C - - - ML 210 209 3 212 3 1 1 67 139 -5.953 -0.047 -5.953 -2.369 1.674 -2.624 -1.145 D 211 209 3 212 3 0 0 63 135 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 72 - U - - - ML 213 212 3 215 3 1 1 65 137 -5.953 -0.047 -5.953 -2.444 -1.982 -2.631 1.766 D 214 212 3 215 3 0 0 61 133 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 73 - U - - - ML 216 215 3 218 3 1 1 63 135 -5.953 -0.110 -4.132 -1.858 -0.766 -2.065 1.535 D 217 215 3 218 3 0 0 59 131 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 74 - U - - - ML 219 218 3 221 3 1 1 61 133 -5.893 -0.049 -5.893 -2.317 -1.877 -2.501 1.744 D 220 218 3 221 3 0 0 58 129 -12.434 -0.647 -1.468 IL 221 221 3 221 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 75 - G - - - ML 222 221 3 224 3 1 1 59 130 -5.953 -0.047 -5.953 -2.316 -3.300 1.838 -3.026 D 223 221 3 224 3 0 0 54 125 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 76 - C - - - ML 225 224 3 227 3 1 1 57 127 -5.953 -0.047 -5.953 -1.537 1.497 -2.115 -0.731 D 226 224 3 227 3 0 0 52 122 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 77 - U - - - ML 228 227 3 230 3 1 1 54 125 -5.953 -0.047 -5.953 -1.566 0.261 -1.758 1.117 D 229 227 3 230 3 0 0 48 118 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 78 - U - - - ML 231 230 3 233 3 1 1 51 121 -5.953 -0.047 -5.953 -0.798 -0.666 -1.431 1.277 D 232 230 3 233 3 0 0 44 113 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 79 - A - - - ML 234 233 3 236 3 1 1 48 117 -5.953 -0.047 -5.953 1.100 -0.828 -0.461 -0.822 D 235 233 3 236 3 0 0 32 101 -11.551 -1.585 -0.585 IL 236 236 3 236 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 80 - A - - - ML 237 236 3 239 2 1 1 1 1 * 0.000 1.671 -2.394 -1.347 -2.104 D 238 236 3 239 2 0 0 0 0 * 0.000 IL 239 239 3 239 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 80 ] - - - - - - E 240 239 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ST7-OT3_1 ACC RF02183 DESC ST7 overlapping transcript 3 conserved region 1 LENG 79 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sun Jul 7 03:54:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02183/CM NSEQ 28 EFFN 3.995605 CKSUM 369985618 STATS LOCAL MSV -8.4662 0.71857 STATS LOCAL VITERBI -9.2711 0.71857 STATS LOCAL FORWARD -3.3011 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.01042 1.73192 1.47326 1.47051 1.38629 1.38629 1.38629 1.38629 0.01895 5.27767 4.29249 0.39730 1.11515 0.00000 * 1 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 2 0.19343 3.15086 2.51030 2.96007 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 3 0.64596 1.92032 1.86140 1.74969 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 4 1.37038 2.20051 0.65426 2.15923 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 5 1.68379 1.79429 0.68758 1.92899 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05938 4.12643 3.18172 1.46634 0.26236 1.09861 0.40547 6 0.54994 2.55955 1.39687 2.31967 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 7 1.81455 0.92715 2.23040 1.09684 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 8 1.59290 1.14901 1.90603 1.10550 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 9 2.63792 1.91822 2.77985 0.32910 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 10 1.40337 1.73935 0.83013 1.94766 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 11 3.02595 2.71499 3.15439 0.17124 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 12 0.49544 2.29668 2.02877 1.84132 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 13 2.73281 2.13931 2.87709 0.27321 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 1.51996 0.24682 14 1.65049 2.91382 0.37848 2.67544 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10072 4.10072 1.46634 0.26236 0.57526 0.82682 15 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 16 0.30790 2.63066 2.69426 2.07635 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09952 4.12643 2.54355 1.46634 0.26236 1.09861 0.40547 17 0.36501 2.70422 1.86276 2.48118 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03504 4.06194 4.06194 1.46634 0.26236 0.34413 1.23386 18 2.71887 0.42606 2.87147 1.49451 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 19 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 20 1.96455 0.67817 2.38962 1.34487 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 21 0.21173 3.09317 2.40514 2.89665 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 22 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.08677 2.70352 4.12643 0.06046 2.83591 1.09861 0.40547 23 1.78220 3.02552 0.32596 2.79089 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 24 0.33038 2.82241 1.91259 2.60117 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 25 3.08023 2.75992 3.21012 0.16205 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 26 2.00260 3.14547 0.26403 2.91841 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 27 2.37295 3.34221 0.18904 3.13073 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05191 4.12643 3.36846 1.46634 0.26236 1.09861 0.40547 28 3.22296 0.15044 3.38652 2.71798 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03344 4.10795 4.10795 1.46634 0.26236 0.66126 0.72608 29 0.71207 1.62960 1.82130 1.88683 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 30 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 31 0.20740 3.10631 2.42900 2.91109 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 32 2.03210 2.56846 0.33166 2.59622 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 33 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 34 0.94725 1.78228 1.39158 1.63343 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 35 1.73646 2.04207 0.57354 2.03584 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 36 2.46452 2.12359 2.31467 0.36162 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 37 1.39665 2.80508 0.48634 2.56139 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 38 2.11098 2.89036 0.30478 2.45298 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 39 0.19710 3.13884 2.48829 2.94685 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 40 0.43435 2.09540 2.42042 1.96321 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 41 1.98933 2.83278 0.33622 2.40905 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 42 1.29060 2.74452 0.54738 2.49921 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 43 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 44 0.25975 2.96512 2.17431 2.75643 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 45 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 46 0.35697 2.53632 2.60228 1.91771 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 47 1.95969 1.77790 2.09786 0.56671 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 48 2.11332 2.31670 2.25129 0.39260 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 49 0.62918 1.95862 1.69281 1.95251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 50 0.30634 2.19799 2.70536 2.45348 - A - - : 1.38629 1.38629 1.38629 1.38629 0.21697 4.12643 1.72088 1.46634 0.26236 1.09861 0.40547 51 0.61796 2.36948 1.39211 2.12968 - A - - : 1.38629 1.38629 1.38629 1.38629 0.08183 3.94877 2.82521 1.46634 0.26236 2.57142 0.07951 52 1.88746 0.79203 2.18961 1.25998 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90793 3.90793 1.46634 0.26236 2.71867 0.06824 53 2.31861 2.21697 2.13688 0.39359 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90793 3.90793 1.46634 0.26236 1.59511 0.22676 54 0.72916 1.84771 1.79801 1.63752 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03932 3.94877 3.94877 1.46634 0.26236 2.57142 0.07951 55 0.16140 3.12085 2.93784 2.95742 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03932 3.94877 3.94877 1.46634 0.26236 0.16588 1.87828 56 1.89593 1.34206 2.26877 0.72345 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 57 1.42639 2.82228 0.47078 2.57911 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 58 2.96930 0.25420 3.14260 2.04057 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 59 2.46694 0.49391 2.35495 1.56054 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 60 0.41019 2.70756 1.68324 2.47689 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 61 2.04425 2.75991 0.35676 2.23223 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 62 2.39678 0.48795 1.90720 1.92000 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 63 0.28680 2.90497 2.06543 2.69086 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 64 2.13590 3.21651 0.23355 2.99480 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 65 2.56831 1.62542 2.70689 0.41588 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 66 2.76297 2.12771 2.90944 0.27013 - U - - : 1.38629 1.38629 1.38629 1.38629 0.06183 4.12643 3.12769 1.46634 0.26236 1.09861 0.40547 67 2.10786 0.31497 2.88265 2.37830 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03376 4.09836 4.09836 1.46634 0.26236 0.55198 0.85757 68 0.50680 2.06938 1.92813 2.07229 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 69 1.76394 2.58414 0.46739 2.06722 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 70 3.02802 0.22570 3.20506 2.17970 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 71 3.08023 2.75992 3.21012 0.16205 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 72 2.67413 1.91759 2.81788 0.32249 - U - - : 1.38629 1.38629 1.38629 1.38629 0.07598 4.12643 2.86431 1.46634 0.26236 1.09861 0.40547 73 2.99217 2.68705 3.11965 0.17725 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03424 4.08468 4.08468 1.46634 0.26236 0.44859 1.01756 74 2.99184 3.67377 0.11235 3.48377 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 75 2.45141 0.34886 2.85257 1.89285 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 76 2.47162 1.20562 2.60510 0.61221 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 77 1.93950 1.84787 2.37829 0.50097 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 78 0.62355 1.95991 1.70553 1.95607 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 79 0.22818 3.04585 2.31963 2.84473 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //