INFERNAL1/a [1.1.5 | Sep 2023] NAME ST7-AS2_1 ACC RF02181 DESC ST7 antisense RNA 2 conserved region 1 STATES 220 NODES 74 CLEN 72 W 157 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 20:04:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02181/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.558594 CKSUM 422794341 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 88.30 NC 61.60 EFP7GF -8.2685 0.71870 ECMLC 0.66030 -10.20861 -0.46492 1600000 747032 0.001606 ECMGC 0.37742 -19.24539 -4.74241 1600000 95331 0.004196 ECMLI 0.54393 -9.38599 0.96795 1600000 334990 0.003582 ECMGI 0.45171 -9.32963 1.84087 1600000 62148 0.006436 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 157 243 -7.185 -7.392 -0.045 -5.806 IL 1 1 2 1 4 1 27 159 245 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 159 244 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 26 157 243 -5.572 -0.062 -5.572 -0.121 -1.577 1.213 -1.227 D 4 2 3 5 3 0 22 154 239 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 28 164 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 26 156 241 -5.572 -0.062 -5.572 0.882 0.003 -0.973 -0.631 D 7 5 3 8 3 0 21 153 238 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 27 162 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 25 155 240 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 10 8 3 11 3 0 20 152 237 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 27 161 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 24 153 238 -5.572 -0.062 -5.572 -0.617 -0.049 -0.068 0.514 D 13 11 3 14 3 0 20 150 235 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 26 160 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 23 152 237 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 16 14 3 17 3 0 19 149 234 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 25 158 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 23 151 236 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 19 17 3 20 3 0 18 148 232 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 24 157 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 22 150 234 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 22 20 3 23 3 0 17 146 231 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 24 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 1 21 148 233 -5.572 -0.062 -5.572 0.022 -0.068 -0.773 0.532 D 25 23 3 26 3 0 17 145 229 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 23 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 21 147 231 -5.572 -0.062 -5.572 -1.101 0.629 -1.275 0.655 D 28 26 3 29 3 0 16 144 228 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 22 153 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 20 146 230 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 31 29 3 32 3 0 15 142 226 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 22 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 19 144 228 -5.572 -0.062 -5.572 -1.108 0.095 -1.280 1.040 D 34 32 3 35 3 0 15 141 225 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 21 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - a - - - ML 36 35 3 38 3 1 18 143 227 -5.572 -0.062 -5.572 0.882 0.003 -0.973 -0.631 D 37 35 3 38 3 0 14 140 223 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 20 149 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 18 142 225 -5.572 -0.062 -5.572 -1.731 -2.480 1.723 -2.196 D 40 38 3 41 3 0 13 138 222 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 19 148 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 17 140 224 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 43 41 3 44 3 0 12 137 220 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 19 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 16 139 222 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 46 44 3 47 3 0 12 136 219 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 18 145 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 16 138 221 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 49 47 3 50 3 0 11 134 217 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 17 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 15 136 219 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 52 50 3 53 3 0 10 133 216 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 17 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 14 135 218 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 55 53 3 56 3 0 10 132 214 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 16 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 14 134 216 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 58 56 3 59 3 0 9 130 213 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 15 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 13 132 215 -5.572 -0.062 -5.572 -1.731 -2.480 1.723 -2.196 D 61 59 3 62 3 0 8 129 211 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 15 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 12 131 213 -5.572 -0.062 -5.572 -1.731 -2.480 1.723 -2.196 D 64 62 3 65 3 0 8 128 210 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 14 137 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 12 130 212 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 67 65 3 68 3 0 7 126 208 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 13 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 11 128 210 -5.572 -0.062 -5.572 -1.731 -2.480 1.723 -2.196 D 70 68 3 71 3 0 6 125 207 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 10 127 209 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 73 71 3 74 3 0 6 124 205 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 12 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 75 74 3 77 3 1 10 126 207 -5.572 -0.062 -5.572 -1.731 -2.480 1.723 -2.196 D 76 74 3 77 3 0 5 122 204 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 11 132 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 78 77 3 80 3 1 9 124 206 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 79 77 3 80 3 0 5 121 202 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 11 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 9 123 204 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 82 80 3 83 3 0 4 120 201 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 10 129 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 8 121 203 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 85 83 3 86 3 0 3 118 199 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 10 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 87 86 3 89 3 1 7 120 201 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 88 86 3 89 3 0 3 117 198 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 9 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 7 119 200 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 91 89 3 92 3 0 2 115 196 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 8 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 93 92 3 95 3 1 6 117 198 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 94 92 3 95 3 0 2 114 194 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 8 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 6 116 197 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 97 95 3 98 3 0 1 113 193 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 99 98 3 101 3 1 5 114 195 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 100 98 3 101 3 0 1 111 191 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 7 121 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 102 101 3 104 3 1 5 113 193 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 103 101 3 104 3 0 0 110 190 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - - - ML 105 104 3 107 3 1 4 112 192 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 106 104 3 107 3 0 0 108 188 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 6 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 4 110 190 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 109 107 3 110 3 0 0 107 187 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 5 117 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 111 110 3 113 3 1 3 109 189 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 112 110 3 113 3 0 0 105 185 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 5 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 114 113 3 116 3 1 3 107 187 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 115 113 3 116 3 0 0 104 183 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 4 114 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - C - - - ML 117 116 3 119 3 1 2 106 185 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 118 116 3 119 3 0 0 103 182 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 4 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - C - - - ML 120 119 3 122 3 1 2 105 184 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 121 119 3 122 3 0 0 101 180 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 3 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - u - - - ML 123 122 3 125 3 1 2 103 182 -5.572 -0.062 -5.572 -1.101 0.629 -1.275 0.655 D 124 122 3 125 3 0 0 100 178 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - g - - - ML 126 125 3 128 3 1 2 102 180 -5.572 -0.062 -5.572 0.458 -1.300 0.766 -0.943 D 127 125 3 128 3 0 0 98 177 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 3 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 129 128 3 131 3 1 1 100 179 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 130 128 3 131 3 0 0 97 175 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 107 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - g - - - ML 132 131 3 134 3 1 1 99 177 -5.572 -0.062 -5.572 0.458 -1.300 0.766 -0.943 D 133 131 3 134 3 0 0 95 173 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - C - - - ML 135 134 3 137 3 1 1 97 175 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 136 134 3 137 3 0 0 94 172 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - U - - - ML 138 137 3 140 3 1 1 96 174 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 139 137 3 140 3 0 0 92 170 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 2 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 141 140 3 143 3 1 1 94 172 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 142 140 3 143 3 0 0 91 168 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - U - - - ML 144 143 3 146 3 1 1 93 170 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 145 143 3 146 3 0 0 89 166 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 100 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 147 146 3 149 3 1 1 91 169 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 148 146 3 149 3 0 0 88 165 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - U - - - ML 150 149 3 152 3 1 1 90 167 -5.572 -0.274 -2.717 -1.668 -1.341 -1.827 1.589 D 151 149 3 152 3 0 0 86 163 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 89 165 -5.370 -0.072 -5.370 -1.301 -1.035 -1.438 1.453 D 154 152 3 155 3 0 0 84 160 -13.174 -3.208 -0.165 IL 155 155 3 155 3 1 1 96 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - C - - - ML 156 155 3 158 3 1 1 87 163 -5.370 -0.072 -5.370 -1.508 1.495 -1.676 -0.951 D 157 155 3 158 3 0 0 83 159 -13.174 -3.208 -0.165 IL 158 158 3 158 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - c - - - ML 159 158 3 161 3 1 1 85 162 -5.370 -0.072 -5.370 -0.958 0.828 -1.118 0.322 D 160 158 3 161 3 0 0 83 159 -13.174 -0.352 -2.208 IL 161 161 3 161 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - U - - - ML 162 161 3 164 3 1 1 84 160 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 163 161 3 164 3 0 0 80 156 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 165 164 3 167 3 1 1 82 158 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 166 164 3 167 3 0 0 78 154 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 168 167 3 170 3 1 1 81 156 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 169 167 3 170 3 0 0 77 152 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 88 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - A - - - ML 171 170 3 173 3 1 1 79 154 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 172 170 3 173 3 0 0 75 150 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - U - - - ML 174 173 3 176 3 1 1 77 152 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 175 173 3 176 3 0 0 73 148 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - G - - - ML 177 176 3 179 3 1 1 76 150 -5.572 -0.062 -5.572 -1.731 -2.480 1.723 -2.196 D 178 176 3 179 3 0 0 72 146 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - C - - - ML 180 179 3 182 3 1 1 74 148 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 181 179 3 182 3 0 0 70 144 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - A - - - ML 183 182 3 185 3 1 1 72 146 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 184 182 3 185 3 0 0 68 141 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - A - - - ML 186 185 3 188 3 1 1 70 144 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 187 185 3 188 3 0 0 66 139 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - A - - - ML 189 188 3 191 3 1 1 68 142 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 190 188 3 191 3 0 0 64 137 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - A - - - ML 192 191 3 194 3 1 1 67 139 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 193 191 3 194 3 0 0 62 134 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - U - - - ML 195 194 3 197 3 1 1 65 137 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 196 194 3 197 3 0 0 60 132 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - C - - - ML 198 197 3 200 3 1 1 63 135 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 199 197 3 200 3 0 0 58 129 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - C - - - ML 201 200 3 203 3 1 1 60 132 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 202 200 3 203 3 0 0 55 126 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - C - - - ML 204 203 3 206 3 1 1 58 129 -5.572 -0.062 -5.572 -1.917 1.631 -2.115 -1.297 D 205 203 3 206 3 0 0 53 123 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - A - - - ML 207 206 3 209 3 1 1 56 126 -5.572 -0.062 -5.572 1.704 -2.188 -1.929 -1.942 D 208 206 3 209 3 0 0 49 119 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - U - - - ML 210 209 3 212 3 1 1 53 122 -5.572 -0.062 -5.572 -1.117 0.040 -1.289 1.071 D 211 209 3 212 3 0 0 45 114 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - U - - - ML 213 212 3 215 3 1 1 49 118 -5.572 -0.062 -5.572 -1.668 -1.341 -1.827 1.589 D 214 212 3 215 3 0 0 32 101 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 72 - C - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 -1.917 1.631 -2.115 -1.297 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ST7-AS2_1 ACC RF02181 DESC ST7 antisense RNA 2 conserved region 1 LENG 72 MAXL 157 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 20:04:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02181/CM NSEQ 4 EFFN 2.558594 CKSUM 422794341 STATS LOCAL MSV -8.1947 0.71870 STATS LOCAL VITERBI -9.3088 0.71870 STATS LOCAL FORWARD -3.5324 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40029 1.28840 1.80592 1.16015 1.38629 1.38629 1.38629 1.38629 0.02560 4.98033 3.99516 0.39730 1.11515 0.00000 * 1 1.47025 2.47908 0.54561 2.23657 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 2 0.77517 1.38399 2.06055 1.82378 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 3 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 4 1.81408 1.42041 1.43370 1.03010 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 5 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 6 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 7 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 8 1.37126 1.43364 1.92181 1.01768 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 9 2.14972 0.95057 2.26998 0.93229 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 10 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 11 2.15423 1.32076 2.27340 0.66531 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 12 0.77517 1.38399 2.06055 1.82378 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 13 2.58623 3.10532 0.19196 2.90868 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 14 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 15 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 16 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 17 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 18 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 19 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 20 2.58623 3.10532 0.19196 2.90868 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 21 2.58623 3.10532 0.19196 2.90868 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 22 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 23 2.58623 3.10532 0.19196 2.90868 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 24 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 25 2.58623 3.10532 0.19196 2.90868 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 26 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 27 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 28 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 29 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 30 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 31 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 32 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 33 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 34 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 35 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 36 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 37 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 38 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 39 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 40 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 41 2.14972 0.95057 2.26998 0.93229 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 42 1.06915 2.28738 0.85538 2.03986 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 43 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 44 1.06915 2.28738 0.85538 2.03986 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 45 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 46 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 47 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 48 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 49 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 50 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.19014 3.86254 1.88295 1.46634 0.26236 1.09861 0.40547 51 2.28803 2.10402 2.38329 0.37933 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04958 3.72198 3.72198 1.46634 0.26236 2.22351 0.11455 52 2.43159 0.35011 2.54829 2.04582 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04958 3.72198 3.72198 1.46634 0.26236 2.22351 0.11455 53 2.05006 0.81271 2.16148 1.16327 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04958 3.72198 3.72198 1.46634 0.26236 0.24393 1.53037 54 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 55 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 56 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 57 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 58 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 59 2.58623 3.10532 0.19196 2.90868 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 60 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 61 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 62 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 63 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 64 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 65 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 66 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 67 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 68 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 69 0.20524 2.90320 2.72327 2.73268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 70 2.16022 1.35857 2.27949 0.64372 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 71 2.54224 2.31551 2.65295 0.28482 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04294 3.86254 3.86254 1.46634 0.26236 1.09861 0.40547 72 2.71528 0.25572 2.85232 2.28527 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //