# STOCKHOLM 1.0
#=GF ID SMCR2_2
#=GF AC RF02178
#=GF DE Smith-Magenis syndrome chromosome region, candidate 2 conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 55.0
#=GF NC 54.6
#=GF TC 55.5
#=GF SE Predicted; ClustalW; Eberhardt R
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.01 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 11997338
#=GF RT Genes in a refined Smith-Magenis syndrome critical deletion interval on
#=GF RT chromosome 17p11.2 and the syntenic region of the mouse.
#=GF RA Bi W, Yan J, Stankiewicz P, Park SS, Walz K, Boerkoel CF, Potocki L,
#=GF RA Shaffer LG, Devriendt K, Nowaczyk MJ, Inoue K, Lupski JR
#=GF RL Genome Res. 2002;12:713-728.
#=GF WK SMCR2
#=GF SQ 5

AC020558.4/182113-182273 UGGCCACAGUAAACGCCCU-UGCAUCCUAUUGAGUGAGCCAAGGAUAA----GCGUGGUCCCUGGCAGGGUGCAGGAUUCUAUCCUGAAAUACACCCCCUCCACUU-UCUCCUAUUCCAGUCCACCGGG------GCCUCUCCUCCAGGCAGGAAACAUGAUCUCCUUUUGAC
AANU01105355.1/294-134   UGGCUACAGUAAGUGCCCU-UGCAUCCUAUUGAGUGAGUCAGGGAUAA----GCCUGGUCCCUGGCAGGAUGCAGGAUUCUAUCCUGAGAUACACCCCCUCUGCUU-UCCCCUAUUCCAGCCCACCAGG------GCCUCUCCUCCAGGCAGGAAACAUGAUCUCCUUUUGAC
ABDC01273248.1/1729-1892 UGGCCGCAGUGGGCACCCUCUGCGUUCUGCUGAGCAGUCCAAGGGCAA----GCCUGGUCCCUGGCAGGGUGUGGGAUUCUGUCCUGAGAUAGCUCCUCUCCCCUU-UCCUGUCUUCCAGCCCGAGGGGCG---UGUCUGUCCUGAAGGCAGGAAACUU-AUCUCCUUCUGAC
ACBE01418270.1/1516-1350 UGG---UGAAAGGCUCGCUUUGUAUUCUGUUGAGUGAGCAAAUGAUAAAUAAGGCUGUUCGCU--CAGGAUGCUCGAUCCAAUCUUGAGAAAGAUCCUUCCCCUUU-UCCUGUCCUCCAGCCCACAAGGGUCUUUCUCCCUCCCCUAGGUAGAGGUCUUUGUCUCCUUUCAAC
AAQR03079824.1/6984-7144 UGACUGUAGCAAGCACCCUUCACAUUCUGCUAAAUGGAACAAGGGUA----------AUCCCUGGCAGGGUGCAGGAUUCUAUCCUGAGAGAGAUCCUCUCCCCUUGCCCUGUCUUCCAGUCCACAGGGGA--CUUUUUGUCCUGGAGACAGGAAACAGUCUCUUCACCUGUG
#=GC SS_cons             ::::::::::::::::::::::::::::::::::::::::::::::::....::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::...:::::::::::::::::::::::::::::::::::::::
#=GC RF                  UGGCugcaGuagGCgCcCUuuGcaUuCUguUGAGUGggccAagGgUAA....GccUGgUCcCUGGCAGGgUGCagGAUuCuaUCcUGAGAuAgauCCucuCCccUU.uCCugUcuUCCAGcCCacagGGgu...UgucucUCCucuAGGcAGGaaaCauuaUCUcCuuuuGac
//
