# STOCKHOLM 1.0
#=GF ID SMAD5-AS1_4
#=GF AC RF02176
#=GF DE SMAD5 antisense RNA 1 conserved region 4
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 42.8
#=GF TC 74.5
#=GF SE Predicted; ClustalW; Eberhardt R
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.36 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 10049768
#=GF RT An antisense transcript to SMAD5 expressed in fetal and tumor tissues.
#=GF RA Zavadil J, Svoboda P, Liang H, Kottickal LV, Nagarajan L
#=GF RL Biochem Biophys Res Commun. 1999;255:668-672.
#=GF WK SMAD5-AS1
#=GF SQ 19

AF071111.1/809-643           UGCUUGUGCAUUUAAAUGGG-UGUGGCGCUAAGUAUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAA-GUUUUGAUGUCUA---GG-UUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-UACCA-AAAGGGUUGUUAUC-UAGCAGCAAA-GAUUGA----AUAGGUGG-AGGUCGUGGCUUGGC
AAPY01035600.1/3026-3196     UGCCGGUGCGUUUGAA-UGGGUGUGGUGCUAAGUGUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAAAGUUCUGAAGUC-GGUUGGGUUUGUCAC-----AUCAUGCUUGUUGCCUAGCAC-UACCA-AAAGUGUUCUUAUC-UAGUAACAAA-GACUGG----GUAGGUGG-AGGUUGUGGCAUGGC
AANG01340942.1/25-194        UGCUUGUGCGUUUAAAUGGG-UGUGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAAAGUUUUGAAGUCUGGUUGGGUUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-UGCCU-AAAGUGCUCUUAUC-UAGCAAC--A-GGCUGG----GUAGGUGG-AGGUCGUGGCUUGGC
AAQQ01033872.1/866-1039      UGCUUUUGCGUUUAAA-UGGGUGUGGUGCUAAGUAUAUCUUGUUUACCUUGUCUUUCUAUUGGAAAAAGUUUUGAAGUCUGGUUGAGUUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-UACCA-AAAGUAUUCUUAUC-UAGUAACAAA-GACUGG---AAUAGGUGG-AGAUUGAGGCUUGGC
ABRR01145897.1/358-529       UGCCAGUGCGUUUACA-UGGGUGUGGUACUAAGUGUGUCUUGUUUACCUUAUCUUUCU-UUGGAAAAAGUUUUGAAGUCUGGUUGGGUUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-CACCA-AAAGUGUUCUUAUC-UAGCAACAGA-GACUGG----AUAGGUGGA-GGUUGUAGCUUGUC
AAWR02002460.1/274828-274657 UGCUUGUGCGUUUAAA-UGGGUGUGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAAAGUUUUGAAGUCUGGUUGGGUUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-UACCG-AAAGUGUGCGUAUC-UUGCGAGGAA-GACUGG----AUCAGUGG-AGGUUGUGGCUUGGC
ABRN01383331.1/9603-9775     UGCCUGUGAGUUUAUA-UGGGUGUGGCACUCCCUGUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAAAGUUUUGAAGUCUGGUUGGGUUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-CACCA-AAAGUGUUCUUAUC-UAACAACGAA-GACUGG----AUAGGUGGAAGGUUGUGGGUUGGC
ABVD01168131.1/484-650       UGCUUGUGAGUUUAAAUGGG-UGGGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUUA-GUGGAAAAAGUUUUGAAGUCAAGAUGGGUUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-UACCA-AA-GUGUCCUUAUC-UAGCAACAGA-GA--------AUAGGUUG-AGGUUCUAUCUUGGC
ABRQ01183941.1/6012-6183     UGCUUAUGCGUUUAAAUGGG-UGUGGUGCUAAGUAUAUCUUGUUUACGUUACCUUUCU-UUGGAAAAAGUUUUGAAGUCUGGUAGGAUUUGUCCC-----AUCUUGCCUAUUGCCUGACAC-UACUG-AAAGGGUCCUUAUC-UAGCAGCAAG-GACUGG----AUAGGCAG-AGGCUGUGGUUUAGU
ABRP01033332.1/3225-3400     UGCCUGUGCGUUGAAACUGGGUGUGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUCU-UUGGAAAA-AUUUUCAAGUCUGGUUGGGUUUGUCACUGAGCAUCACGCCUGUUGCUUAGUAC-UACCA--AAUUGUUCUUAUC-UAGCAACAAA-GACUGA----AUAGGUGG-AGUUUGCGGCUUGGC
AAIY01523265.1/4768-4940     CGGUUGUGCGUUUAAA-UGGGUGUGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUCU-UUGGAAAACGUUUUGAAGUCUGGUUGGAUUUGUCAC-----AUCAUGCCUGUUGCCUAGCAC-UGCCA-CAGAUGUCCUUAUC-UCACAACAAAAGACUGC----AUAGGUGG-AGGUUAAUGCUCAGG
AAGV020384958.1/594-770      UGCUUUUGAGUUUAAAUGGGGUGGGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUCC-GUGGAAAAAGUUUUGAAGUCUAGUUGGGUUUUUCAU-----AUCAUGCCUGUCGCCUAGCAC-UACCA-AAAGUGUCCUUGUC-CAGCAACAAU-GACUGAAUUAAUAGGUUG-AGGUUCUAUCUUGGU
AAFC03075338.1/34122-34294   UGCCCGUGCAUUUGUA-UGGGUGUGGUGCUAAGUGUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAAAGUUUUGAAGUUUGGUCGGGUUUGUCAC-----AUCAUGCCGGUUGCCUAGUAC-CCCCCCAGAGUGUUCUUAUU-UAGCAA-AAA-GACUGG----AUAGGUGGGAGGUUGUGGCUUGGC
AAKN02022958.1/9796-9966     UGCUUUAGUGUUUGGA-UGGGUGUGGUGUUAAAUAAAUCGUGUUUACCUUAUCUUUAU-GUAAAAAAGGUUUUGAAGUCUGAUAUGGUUUGUCAC-----UUUAUGCAUGUUGCCUAGCAC-UAUCA--UAAUGCUCUUAUC-UAGCAACAGA-GACUGG----AUAGGUGG-UGCUUGUGGCUUGCU
AAHX01089885.1/51731-51568   UGCUUUUGCAGUUUAAAUGGGUGUGGUGCUAAGUAUAUCUUGUUUA-----UCUUUCU-GUGGAAAAAGUUUUCAAGUCUGGUGGAGUUUGUCAC-----CUCAUGCCGGUUGCCUAGCAC-UAUCA-AGUGGAUCCCUACC-UAGCAACAGA-GAGUGGG-UGAUCGCGGG-AGCUUGUU-------
CAAA01017758.1/4218-4387     UGCUGCUGC-GUUUAGAUGGGUGUGGUGCUAAGUAUAUCUUGUUUA-----UCUUUCU-GUGGAAAAAGUUUUGAAGUCUGGUGGAGUUGAUCAC-----AUCAUGCCUGUUGCCUAGCAC-UAUCA-AGUGUAUGCCUACC-UAGCAACGGA-CACUGGG-CGAUCAAUGG-AAUUUGUUGGUUGCU
ABQO010070138.1/2267-2104    UGCUUGUGCAUAUAAAAUGGGCGUGGUGCUAACUAUAUCUUGUUUACCUUAUCUUUCU-UUGGAAAAAGUUUUGAAGUCUGUUUGGGGU-GUCAC-----AUCUUGCCUUUUGCCCAGCAC-UG--A-AGAGUGUUGUUAGCUUAGCAGCAAA-CACUAG-----------C-ACACUCUUUUAUGGA
AAEX03007800.1/338-510       UGCCUGUGCCUUUCAAUGGG-UGUGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAAAGUUUUGAAGUCUGGUUGGGUUUGUCAC-----AUCGUGCGUGUUGCCUAGCACCUACCA-AAAGUGCCCUUAUC-UAGCAGCCGA-GGCUGA----AUAGGUGG-AGGUCGUGGCUUGGC
AAQR03009545.1/7619-7448     UGCUUGUGCUUUUAAA-UGGGUGUGGUGCUAAGUAUAUCUUGUUUACCUUAUCUUUCU-GUGGAAAAAGUUUUGAAGUCUGGUUGGGUUUGUCAC-----UUCGAGCCUGUUGCCUAGCAC-UACCC-AAAGUGUUCUUAUC-UAGCAACAAA-GACUGG----GUAGGUGG-AGGUUGUGGCUUGGC
#=GC SS_cons                 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::.....:::::::::::::::::::::.:::::.::::::::::::::.::::::::::.::::::....::::::::.:::::::::::::::
#=GC RF                      UGCuugUGcgUUUaaAuuGGGUGUGGUGCUAAGUaUAUCUUGUUUACCUUAUCUUUCU.gUGGAAAAaGUUUUGAAGUCUGGUuGGGUUUGUCAC.....aUCaUGCcUGUUGCCUAGCAC.UacCa.AaaGuGUuCuUAuC.UaGCAaCaaa.GACUGg....AUaGGuGG.AGgUUgugGcUUGgc
//
