# STOCKHOLM 1.0
#=GF ID SMAD5-AS1_2
#=GF AC RF02174
#=GF DE SMAD5 antisense RNA 1 conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 48.5
#=GF TC 50.5
#=GF SE Predicted; ClustalW; Eberhardt R
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.89 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 10049768
#=GF RT An antisense transcript to SMAD5 expressed in fetal and tumor tissues.
#=GF RA Zavadil J, Svoboda P, Liang H, Kottickal LV, Nagarajan L
#=GF RL Biochem Biophys Res Commun. 1999;255:668-672.
#=GF WK SMAD5-AS1
#=GF SQ 20

AF071109.1/347-475           UAUUCCAGUCUCUUCCCCUCCCCUUUUCCCCUCUCCU-------CCUUUCAGCUGCUGUUACUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAACUCCCAUGUGGCGCGCCCGUCUUAA-GUCUGAGCAUGCUCAGUA
ABRP01033332.1/2854-2980     UUUUCCAGUCUCUCCCCCUCCCUUUUCCCUCUCUUCC-------CCUUUCAGCUGCUGUUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAACUCCCAUGUGGCGC--CCGUCUUAA-AUCGGAGCAUGCUCAGUA
AAPY01035600.1/2651-2778     UAUUCCAGUCUCUUCCCCCUCCCC-----CUUUCCUCUCUUC-CCCUUUCAGCUGCUGUUAUUACGUGG--AGUUUGGAGCC-U-UAGCU-UUGAAAACUCCCAUGUGGCGC--CUGUCUUAA-GUUAGAGCAUGCUCAGUA
AAWR02002460.1/275215-275083 UAUUCCGGCCUCUCUCCCUCCCCCGCCCUUUUUCCUCUCUUC-CCCUUUCAGCUGCUGCUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAACUCCCAUGUGGCGC--CUGUCUAAA-GUCGGAGCAUGCUCAGUA
AAFC03075338.1/33749-33875   ------UGCCCCCUCCCCAUGCUCUCCCUCUUUCCUCUCUUC-CCCUUUCAGCUGCUGUUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAACUCCCAUGUGGCGC--CUGUCUUAA-GUCGGAGCAUGCUCAGUA
ACBE01024212.1/541-673       UAUUCCGGGCUCUCCCCCUCCCCCGCCCGUUUUCCUCUCUUC-CCCUUUCAGCUGCUCUUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAACUCCCAUGUGGCGC--CUGUCUUAA-GUUGGAGCAUGCUCAGUA
AAQQ01033872.1/493-621       ----UUUUCCAGACCCCCGCCACCUUCCCUUUUUCCUUCUUC-CCUUUUCAACUGCUGUUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAACUCCCUUGUGGCGC--CUGUCUUAA-GUCCGAGCAUGCUCAAUA
ABRN01383331.1/9219-9351     UAUUCCGGUCUGUCCCCCUCCCCCUCCCUCUUUCCUGCCUUC-CCCUUUCAGCUGCUGUUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAUCUCCCAUGUGGCGC--CUGUCUUAA-GUCGGAGCAUGCUCAGUA
ABRQ01183941.1/5632-5758     ------CACGGCUCUUCCCUCCCCCCACUUUUUCCCCCUCUU-CCCUUUCAGCUGCUGUUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAAUUCCCAUGUGGCGC--CUGUCUUAC-GUCGGAGCAUGCUCAGUA
AAKN02022958.1/9419-9545     -------UCUUUUUGUCCUUUACCACCCGGUUUCCUCUCCUCCCUUUUUCAGCUGCUGUUACUACGCAG--AGUUUGGAACC-U-AAGCU-UUGAAAACUCUCAUAAGGCGC--CUGUCUAAA-GUCAGAGCAUGCUUAGUA
ABRT010053604.1/1724-1848    UAUUCCAGCCUCUUCCCCUCCUCCUCCCCCUUUUCCCUAUUC-CCCUUUCAGCUGCUGUUAUUACGUGG--AGUUUGGAACC-U-AAGCU-UUGAAAACUCCCAUGUGGCGC--CUGUCUUAA-GUCUGAGGAA--------
AAIY01523265.1/4393-4510     -----------UAUCCACGGCGCCUCCC---UCCCCCUCUUC-CCUUU-CAGCUGCUGUUAUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAACCUCCCAAGUGGCGC--CUGUCUUAA-GUCGGAGCAUGCUCCGUU
ABVD01168131.1/114-240       ------AUGUCCCCCUUCCUCGGUUCCC-CUCUUCUCCAUUUUCCCUUUCAGCUGCUCUUAUUACAUGG--AGUUUGGAGCC-U-AAACU-UUGAACACUCUCAUAUGGCGC--CUGUCUUAA-AUCGGAGCAUGCUCAGUA
AAYZ01609777.1/414-540       ------UACUCAGAGCUGGACUCCAGGCCCCCUGCCCCCUCCCCCCUUCCAGCCGCUGUUGUUACGUGG--AGUUUGGAGCU-U-AAGCU-UUGAAAACUC-CAAGUGGCGC--CUGUCUGAA-GUCGGAGCAUGCUCAGUA
AAGV020384958.1/212-339      ------UUCUCCACCCCACUCGCCACCCACCUUUCUCCUCUUCCGAUUUCAGCCACUCUUAAUUCCGGG--AGUUGGGAACC-U-AAGCU-UUGAAAACUCCCAUGUGGUCC--UUGUCCUAA-AUUGGGGCAUUCUCAGUA
ABDC01055302.1/753-880       ----CCAGUCUCCUCCCCUCCUCCUCU--UUUCCCCCUCGUUUCCCUUUCAGCUGCUGCUGUUACGUGG--AGUUUGGAGCC-U-AAGCU-UUGAAAACUCCCAUGUGGCGC--CUGUCUUGA-GUCUGAGCAUGCUCAGUG
CAAA01017758.1/3829-3955     ----CAAGUUCAGACUCCAUCCCCUCCCCCUGCCCUUU------CUCCUCUGCGCUUCUGGCUGCGCCG--AGCCGGGAACCCU-AAGCUCUGGGAACUUCCCCGGUGGCGG--CCGUCUUAGGGUCAGAGCAUGCUCAGUG
ABQO010020562.1/3113-2986    ----AAAGCACAGCCCCCUUUCCAAUUCUGUGGGGUCUGUGU-CCCCCUCAGCUGCUGCUAAGAGCUGGAGAAGUGGAAUCC-U-AAG---UUGA-AACUCCAAUGUGGUUC--UAGUACAGA-AACUGGGCAUGCUCAGUA
AAQR03009545.1/7988-7858     ----CUAGUCUCUUCCCCUCCUCCUCCCCCUUUCCCCUCUUUUCCCUUUCAGCUGCUGUUAUUACGUGG--AGUUUGGAGCC-UUAAGCU-UUGAAAACUCCCAUGUGGCGC--CUGUCUUAA-GUCUGAGCAUGCUCAGUA
AAHX01089885.1/52074-51959   ------------------UACUCCACUCCCUCCCCCUACCCUUUCUCCUCUGCGCUGGUGGCAGCGCUG--AGCCGGGAGCC-U-GAGCU-UUGAGAACUCCCCUGUGACGG--CCGUCUUCG-GUCAGAGCAUGCUCACUG
#=GC SS_cons                 ....::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::..:::::::::::.:.:::::.:::::::::::::::::::::..:::::::::.::::::::::::::::::
#=GC RF                      ....ccagcuucuccCCCuuCcCCuccCccUuucCucucuuu.CCcUUUCAGCuGCUGUUauuaCGuGG..AGuUuGGAgCC.U.AAGCU.UUGAAAACUCCCaUGUGGCGC..CuGUCUuaa.GUCgGAGCAUGCUCAGUa
//
