INFERNAL1/a [1.1.5 | Sep 2023] NAME RFPL3-AS1_2 ACC RF02172 DESC RFPL3 antisense RNA 1 conserved region 2 STATES 217 NODES 73 CLEN 71 W 155 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 21:14:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02172/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.815430 CKSUM 183267344 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 41.20 NC 39.80 EFP7GF -9.1660 0.71873 ECMLC 0.74529 -9.24675 -0.60966 1600000 749533 0.001601 ECMGC 0.45246 -18.58744 -6.39631 1600000 99458 0.004022 ECMLI 0.67452 -7.88425 0.67096 1600000 384885 0.003118 ECMGI 0.50349 -10.17845 -0.16924 1600000 61757 0.006477 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 155 240 -7.272 -7.479 -0.042 -5.893 IL 1 1 2 1 4 1 27 157 242 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 157 241 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 26 155 240 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 4 2 3 5 3 0 21 152 237 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 28 161 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 25 154 239 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 7 5 3 8 3 0 21 151 235 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 27 160 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 24 153 237 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 10 8 3 11 3 0 20 149 234 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 26 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 24 151 236 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 13 11 3 14 3 0 19 148 232 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 25 158 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 23 150 234 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 16 14 3 17 3 0 18 147 231 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 25 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 22 149 233 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 19 17 3 20 3 0 18 146 229 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 24 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 21 147 231 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 22 20 3 23 3 0 17 144 228 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 23 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 21 146 230 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 25 23 3 26 3 0 16 143 227 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 22 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 20 145 228 -5.648 -0.059 -5.648 -1.177 0.239 -1.354 0.990 D 28 26 3 29 3 0 15 142 225 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 22 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 19 144 227 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 31 29 3 32 3 0 15 140 224 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 21 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - g - - - ML 33 32 3 35 3 1 18 142 226 -5.648 -0.059 -5.648 -0.886 -1.119 0.881 0.210 D 34 32 3 35 3 0 14 139 222 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 20 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 18 141 224 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 37 35 3 38 3 0 13 138 221 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 19 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 17 140 223 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 40 38 3 41 3 0 12 136 219 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 19 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - a - - - ML 42 41 3 44 3 1 16 138 221 -5.648 -0.059 -5.648 0.754 -0.932 -0.947 0.345 D 43 41 3 44 3 0 12 135 218 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 18 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - a - - - ML 45 44 3 47 3 1 16 137 220 -5.648 -0.059 -5.648 0.754 -0.932 -0.947 0.345 D 46 44 3 47 3 0 11 134 216 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 17 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 15 136 218 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 49 47 3 50 3 0 10 132 215 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 17 142 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 14 134 217 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 52 50 3 53 3 0 10 131 213 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 16 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 13 133 215 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 55 53 3 56 3 0 9 130 212 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 15 139 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - g - - - ML 57 56 3 59 3 1 13 132 214 -5.648 -0.059 -5.648 -0.951 0.093 0.890 -0.828 D 58 56 3 59 3 0 8 128 210 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 14 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 12 130 212 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 61 59 3 62 3 0 7 127 209 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 14 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 11 129 211 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 64 62 3 65 3 0 7 126 207 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 11 128 209 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 67 65 3 68 3 0 6 124 206 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 12 134 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 10 126 208 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 70 68 3 71 3 0 5 123 204 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 12 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 10 125 206 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 73 71 3 74 3 0 5 122 203 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 11 131 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 9 123 205 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 76 74 3 77 3 0 4 120 201 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 10 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - c - - - ML 78 77 3 80 3 1 8 122 203 -5.648 -0.059 -5.648 -1.255 0.915 -1.437 0.408 D 79 77 3 80 3 0 4 119 200 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 81 80 3 83 3 1 8 121 202 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 82 80 3 83 3 0 3 117 198 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 9 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 7 119 200 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 85 83 3 86 3 0 2 116 197 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 9 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - g - - - ML 87 86 3 89 3 1 6 118 199 -5.648 -0.059 -5.648 -0.951 0.093 0.890 -0.828 D 88 86 3 89 3 0 2 115 195 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 8 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 90 89 3 92 3 1 6 117 197 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 91 89 3 92 3 0 1 113 193 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 7 123 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 5 115 196 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 94 92 3 95 3 0 1 112 192 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - C - - - ML 96 95 3 98 3 1 5 114 194 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 97 95 3 98 3 0 0 111 190 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 6 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 99 98 3 101 3 1 4 112 192 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 100 98 3 101 3 0 0 109 189 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 6 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - c - - - ML 102 101 3 104 3 1 4 111 191 -5.648 -0.059 -5.648 -0.999 0.826 0.173 -0.740 D 103 101 3 104 3 0 0 108 187 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 5 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 105 104 3 107 3 1 3 110 189 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 106 104 3 107 3 0 0 106 186 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 5 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - - - ML 108 107 3 110 3 1 3 108 188 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 109 107 3 110 3 0 0 105 184 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 4 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 111 110 3 113 3 1 2 107 186 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 112 110 3 113 3 0 0 104 182 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 4 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 114 113 3 116 3 1 2 105 184 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 115 113 3 116 3 0 0 102 181 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 2 104 183 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 118 116 3 119 3 0 0 101 179 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 3 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 120 119 3 122 3 1 1 103 181 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 121 119 3 122 3 0 0 99 177 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 3 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - G - - - ML 123 122 3 125 3 1 1 101 180 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 124 122 3 125 3 0 0 98 176 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 108 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 126 125 3 128 3 1 1 100 178 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 127 125 3 128 3 0 0 96 174 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 129 128 3 131 3 1 1 98 176 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 130 128 3 131 3 0 0 95 172 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - u - - - ML 132 131 3 134 3 1 1 97 175 -5.648 -0.059 -5.648 -0.842 -0.962 0.245 0.802 D 133 131 3 134 3 0 0 93 171 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - c - - - ML 135 134 3 137 3 1 1 95 173 -5.648 -0.059 -5.648 -1.255 0.915 -1.437 0.408 D 136 134 3 137 3 0 0 92 169 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - C - - - ML 138 137 3 140 3 1 1 94 171 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 139 137 3 140 3 0 0 90 167 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - a - - - ML 141 140 3 143 3 1 1 92 169 -5.648 -0.059 -5.648 0.823 -1.311 0.392 -0.956 D 142 140 3 143 3 0 0 89 166 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - c - - - ML 144 143 3 146 3 1 1 91 168 -5.648 -0.059 -5.648 -1.255 0.915 -1.437 0.408 D 145 143 3 146 3 0 0 87 164 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 147 146 3 149 3 1 1 89 166 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 148 146 3 149 3 0 0 86 162 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - U - - - ML 150 149 3 152 3 1 1 88 164 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 151 149 3 152 3 0 0 84 160 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 86 162 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 154 152 3 155 3 0 0 83 159 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - C - - - ML 156 155 3 158 3 1 1 85 161 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 157 155 3 158 3 0 0 81 157 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - u - - - ML 159 158 3 161 3 1 1 83 159 -5.648 -0.059 -5.648 -1.177 0.239 -1.354 0.990 D 160 158 3 161 3 0 0 80 155 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - g - - - ML 162 161 3 164 3 1 1 82 157 -5.648 -0.059 -5.648 0.115 0.056 0.197 -0.452 D 163 161 3 164 3 0 0 78 153 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - u - - - ML 165 164 3 167 3 1 1 80 155 -5.648 -0.059 -5.648 -1.171 0.323 -1.348 0.935 D 166 164 3 167 3 0 0 76 151 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 168 167 3 170 3 1 1 78 153 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 169 167 3 170 3 0 0 75 149 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - g - - - ML 171 170 3 173 3 1 1 77 151 -5.648 -0.059 -5.648 -0.951 0.093 0.890 -0.828 D 172 170 3 173 3 0 0 73 147 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 174 173 3 176 3 1 1 75 149 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 175 173 3 176 3 0 0 71 145 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 83 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - u - - - ML 177 176 3 179 3 1 1 73 147 -5.648 -0.059 -5.648 0.233 -0.917 -0.974 0.837 D 178 176 3 179 3 0 0 70 143 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - C - - - ML 180 179 3 182 3 1 1 72 145 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 181 179 3 182 3 0 0 68 141 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - U - - - ML 183 182 3 185 3 1 1 70 143 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 184 182 3 185 3 0 0 66 139 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - U - - - ML 186 185 3 188 3 1 1 68 141 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 187 185 3 188 3 0 0 64 136 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - C - - - ML 189 188 3 191 3 1 1 66 139 -5.648 -0.059 -5.648 -2.075 1.672 -2.282 -1.430 D 190 188 3 191 3 0 0 62 134 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - U - - - ML 192 191 3 194 3 1 1 64 137 -5.648 -0.059 -5.648 -1.815 -1.463 -1.982 1.632 D 193 191 3 194 3 0 0 60 132 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - G - - - ML 195 194 3 197 3 1 1 62 134 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 196 194 3 197 3 0 0 58 129 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - G - - - ML 198 197 3 200 3 1 1 60 132 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 199 197 3 200 3 0 0 55 126 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - G - - - ML 201 200 3 203 3 1 1 58 129 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 202 200 3 203 3 0 0 52 123 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - G - - - ML 204 203 3 206 3 1 1 55 126 -5.648 -0.059 -5.648 -1.850 -2.648 1.752 -2.366 D 205 203 3 206 3 0 0 49 119 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - G - - - ML 207 206 3 209 3 1 1 52 122 -5.648 -0.059 -5.648 0.046 -1.584 1.143 -1.230 D 208 206 3 209 3 0 0 45 114 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - A - - - ML 210 209 3 212 3 1 1 48 118 -5.648 -0.059 -5.648 1.744 -2.378 -2.117 -2.138 D 211 209 3 212 3 0 0 32 101 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - a - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 0.822 0.165 -1.043 -0.677 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RFPL3-AS1_2 ACC RF02172 DESC RFPL3 antisense RNA 1 conserved region 2 LENG 71 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 21:14:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02172/CM NSEQ 3 EFFN 2.815430 CKSUM 183267344 STATS LOCAL MSV -8.3754 0.71873 STATS LOCAL VITERBI -9.1513 0.71873 STATS LOCAL FORWARD -3.6569 0.71873 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52765 1.38436 1.42017 1.23513 1.38629 1.38629 1.38629 1.38629 0.02409 5.04038 4.05521 0.39730 1.11515 0.00000 * 1 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 2 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 3 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 4 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 5 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 6 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 7 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 8 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 9 2.20238 1.22068 2.32474 0.69992 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 10 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 11 2.00065 2.16168 0.77562 1.24063 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 12 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 13 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 14 0.86347 2.03248 2.04245 1.14701 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 15 0.86347 2.03248 2.04245 1.14701 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 16 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 17 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 18 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 19 2.04527 1.32162 0.76968 1.96048 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 20 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 21 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 22 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 23 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 24 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 25 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 26 2.25619 0.75218 2.38267 1.10380 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 27 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 28 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 29 2.04527 1.32162 0.76968 1.96048 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 30 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 31 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 32 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 33 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 34 2.07885 0.81342 1.26626 1.89912 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 35 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 36 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 37 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 38 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 39 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 40 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 41 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 42 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 43 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 44 1.96991 2.05301 1.21651 0.83029 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 45 2.25619 0.75218 2.38267 1.10380 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 46 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 47 0.81594 2.29490 1.11427 2.04910 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 48 2.25619 0.75218 2.38267 1.10380 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 49 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 50 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 51 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 52 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 53 2.20238 1.22068 2.32474 0.69992 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 54 1.30641 1.34762 1.24958 1.69976 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 55 2.19824 1.16241 2.32056 0.73804 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 56 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 57 2.04527 1.32162 0.76968 1.96048 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 58 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 59 1.22467 2.02216 2.06135 0.80633 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 60 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 61 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 62 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 63 2.82451 0.22753 2.96812 2.37769 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 64 2.64445 2.40004 2.75983 0.25497 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 65 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 66 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 67 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 68 2.66858 3.22158 0.17166 3.02644 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 69 1.35466 2.48422 0.59416 2.23917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 70 0.17733 3.03481 2.85373 2.86853 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04069 3.91510 3.91510 1.46634 0.26236 1.09861 0.40547 71 0.81653 1.27203 2.10895 1.85530 - a - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //