# STOCKHOLM 1.0
#=GF ID XIST_A_REPEAT
#=GF AC RF02162
#=GF DE XIST RNA A repeat
#=GF AU Burge SW; 0000-0002-2506-927X
#=GF GA 33.0
#=GF NC 32.9
#=GF TC 33.0
#=GF PI XIST
#=GF SE Duszczyk MM, Wutz A, Rybin V, Sattler M, Burge SW;
#=GF SS Predicted; CMFinder;Burge SW
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000726; repeat_unit;
#=GF RN [1]
#=GF RM 21947263
#=GF RT The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform
#=GF RT for multimerization.
#=GF RA Duszczyk MM, Wutz A, Rybin V, Sattler M
#=GF RL RNA 2011;17:1973-1982.
#=GF WK XIST
#=GF SQ 54

EU086094.1/497-529         UGGUCCAUCGGGACCUCGGAUACCUGCGUUU---A-----G-
M97168.1/608-642           UGGCCCAUCGGGGCUUCGGAUACCUGCUUU-----UUUUU--
AF104906.5/650-686         UUGCCCAUCGGGGCCUCGGAUACCUGCUUUA---AUUUUU--
ABDC01412462.1/1593-1561   UGGCCCAUCGGGGCUUCGGAUACCUGCUUUU---AU------
AAPY01379542.1/1953-1917   UGGCCCAUCGGGGCUUCGGAUACCUGCUUUA---AUUUUU--
ABRN01131313.1/617-581     UGGCCCAUCGGGGCCUUGGAUACCUGCUUUG---AUUUUU--
AADA01036560.1/1221-1185   UGGCCCAUCGGGGCCGCGGAUACCUGCUUUG---AUUUUU--
AJ310129.1/9034-9068       UGGUCCAUCGGGACCUCGGAUACCUGCUAGU----UU---AG
ABRR01407567.1/1407-1373   UGGCCCAUCGGGGCAACGGAUACCUGCUUU-----UUUUA--
AANG01523518.1/1387-1422   UUGCCCAUCGGGGCCUUGGAUACCUGCUUU----AUUUAU--
ABRP01195257.1/1801-1762   UUGCCCAUCGGGGCCUCGGAUACCUGCUUUCACUAUUUUU--
U50910.1/1530-1566         UGGCCCAUCGGGGCCCCGGAUACCUGCUCUG---AUUUUU--
AJ310130.1/12382-12417     UUGCCCAUCGGGGCCUUGGAUACCUGCUU-A---AUUUUU--
AANN01200569.1/1569-1605   UUGCCCAUCGGGGCCACGGAUACCUGCUUAG---AUUUUU--
AALT01486907.1/919-954     UUGCCCAUCGGGGCCUCGGAUACCUGCUCGC----UUUUU--
AAKN02029935.1/42514-42550 UUGCCCAUCGGGGCCUCGGAUACCUGCCCUA---AUUUUU--
AANU01175104.1/38293-38330 UCGCCCAUCGGGGCCGCGGAUACCUGCUUUU--UAUUUUU--
AAHX01111727.1/40962-40998 AUGCCCAACGGGGCCUCGGAUACCUGCUUUA---AUUUUU--
AJ421479.1/106796-106828   UAGCCCAUCGGGGCCAUGGAUACCUGCUUUU---------UG
AAIY01358820.1/951-987     UUGCCCAUCGGGGCCUCGGAUACCGGCUCUG---AUUUUU--
AAGV020511993.1/1505-1469  UUGCCCAACGAGGCCUCAGAUACCUGCUUUA---AUUUUU--
ABRT010581361.1/119-87     UCACCCAUCGGGGUCACGGAUACCUGCUUUU---AU------
ABGA01241178.1/1628-1596   UUGCCCAUCGGGGCUGCGGAUACCUGGUUUU---AU------
L10734.1/371-408           UUGCCCAUCGGGGCUGUGGAUACCUGCUUUA---AAUUUUU-
AF138745.1/1968-1936       AUGCCCAACGGGGCCUCGGAUACCUGCUGUU---AU------
L10730.1/44-76             UUGCCCAUCGGGGCCACGGAUACCUGUGUGU---------CC
FJ361197.1/331-367         -UGCCCAUCGGGGCUGUGGAUACCUGCUUUA---AAUUUUU-
AJ310127.1/13329-13364     UUGCCCACCGGGGCCGUGGAUACCUGCUUC----AUUUUU--
AAVX01126796.1/700-665     AUGCCCAUCGGGGCCUCGGA-AUCUGUACUU---CUUUUA--
AAPE02004049.1/4919-4953   UGGCCCACCGGGGCCUAGGAUACCUGCUUU-----UUUUU--
AGCE01104057.1/2893-2927   UUGCCCAUCGGGGCCGCGGAUACCUGCUUU-----UUAUU--
CU855548.6/128407-128372   UUGCCCAUCGGGGCCUCGGAUACCUGCUUU----AUUAUU--
AF104906.5/487-523         UUGCCCAUCGGGGCCACGGAUACCUGCUUUU---AAUUUU--
M97168.1/456-493           UCGCCCAUCGGGGCCGCGGAUACCUGCUUUU--UAUUUUU--
M97168.1/368-404           UUGCCCAUCGGGGCUGCGGAUACCUGGUUUU---AUUAUU--
AL353804.22/35456-35420    UGGCCCAUCGGGGCCGCGGAUACCUGCUUUG---AUUUUU--
AF104906.5/693-729         UUGCCCAUCGGGGCCUCGGAUACCUACUUUA---AUUUUU--
FJ156095.1/1619-1583       UGGCCCAUCGGGGCUGCGGAUACCUGGUUUC---AUUAUU--
FJ156095.1/1573-1535       UUGCCCAACGGGGCUGUGGAUAGCUGCUUUUU-AAUUCUU--
M97168.1/560-591           UGGCCCAUCGGGGUGACGGAUAUCUGCUUUU----U------
U29341.1/1642-1673         UAGCCCAUCGGGGCCAUGGAUACCUGCUUUU----U------
FJ156095.1/1519-1484       UUGCCUAUCGGGGCCGUGGAUACCUGCUUUU----UUUUU--
M97168.1/698-734           CUGCCCAUCGGGGCCGCGGAUACCUGCUUUG---AUUUUU--
FJ156095.1/1324-1288       UUGCCCAUCGGGGCCUCGGAUACCUGCUUUU---AUUAUU--
AF104906.5/437-474         UUACCCAACGGGGUCAUGGAUACCUGCCUUU--UAUUUUA--
AF104906.5/587-622         UGGCCCAUCGGGGCAAUGGAUACCUGCCUCU----UUUUU--
L04961.1/549-585           CGGUCCAUCGGGACCUCGGAUACCUGCGUUU---AGUCUU--
AF104906.5/735-771         UUGCCCAUCGGGACCGCGGACACCUGCUUAG---AUUUUU--
AF104906.5/536-567         UAGCCCAUCGGGGCCUCGGAUACCUGCUGUG----U------
FJ156095.1/1280-1244       UUGCCCAUCGGGGCCUCGGAUACCUGCUCUA---AUUUUU--
AF104906.5/358-389         UUGCCCAUCGCGGCUGUGGAUACCUGGUUUU---A-------
L04961.1/435-471           UUGCCCAUCUGGGCUGUGGAUACCUGCUUUU---AUUCUU--
CU855548.6/128656-128618   UUGCCCAACGGGGCCGUGGAUACCUGCCUUUU-AAUUCUU--
FJ156095.1/1368-1332       UGGCCCAUCGGGGCCUCGGAUACCUGCUUUU---AUUAUU--
#=GC SS_cons               ::<<<<____>>>>::<<<____>>>:::::...::::::..
#=GC RF                    UUGCCCAUCGGGGCCuCGGAUACCUGCUUUU...AUUUUU..
//
