INFERNAL1/a [1.1.5 | Sep 2023] NAME NBR2 ACC RF02153 DESC Neighbour of BRCA1 gene 2 converved region STATES 193 NODES 65 CLEN 63 W 143 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 04:02:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02153/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 3.170654 CKSUM 729885373 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.90 EFP7GF -9.6556 0.71888 ECMLC 0.60233 -9.99245 0.74392 1600000 772095 0.001554 ECMGC 0.36893 -17.25462 -0.95935 1600000 163283 0.002450 ECMLI 0.44428 -10.09073 2.93667 1600000 391580 0.003065 ECMGI 0.41574 -8.55835 4.49391 1600000 90929 0.004399 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 143 226 -7.384 -7.591 -0.039 -6.005 IL 1 1 2 1 4 1 21 145 229 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 145 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 20 144 227 -5.747 -0.055 -5.747 -2.003 -2.864 1.785 -2.585 D 4 2 3 5 3 0 16 140 223 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 22 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 19 142 225 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 7 5 3 8 3 0 15 139 222 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 21 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 19 141 224 -5.747 -0.055 -5.747 1.104 -1.073 -0.648 -0.440 D 10 8 3 11 3 0 14 138 220 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 20 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 18 140 222 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 13 11 3 14 3 0 13 137 219 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 20 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 17 138 221 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 16 14 3 17 3 0 13 135 218 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 19 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 17 137 219 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 19 17 3 20 3 0 12 134 216 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 18 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 16 136 218 -5.747 -0.055 -5.747 -2.003 -2.864 1.785 -2.585 D 22 20 3 23 3 0 11 133 215 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 18 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 15 134 217 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 25 23 3 26 3 0 10 131 213 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 17 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 14 133 215 -5.747 -0.055 -5.747 -1.304 -1.229 -0.810 1.377 D 28 26 3 29 3 0 10 130 212 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 16 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 14 132 214 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 31 29 3 32 3 0 9 129 210 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 15 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 13 130 212 -5.747 -0.055 -5.747 -2.281 1.717 -2.499 -1.605 D 34 32 3 35 3 0 8 127 209 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 15 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 12 129 211 -5.747 -0.055 -5.747 1.422 -1.729 -0.641 -1.407 D 37 35 3 38 3 0 8 126 207 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 14 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 12 128 209 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 40 38 3 41 3 0 7 125 206 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 13 134 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 11 126 208 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 43 41 3 44 3 0 6 123 204 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 13 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 10 125 206 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 46 44 3 47 3 0 6 122 203 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 12 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 10 124 205 -5.747 -0.055 -5.747 -2.003 -2.864 1.785 -2.585 D 49 47 3 50 3 0 5 121 201 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 11 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 9 122 203 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 52 50 3 53 3 0 4 119 200 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 11 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 8 121 202 -5.747 -0.055 -5.747 -1.375 -0.177 -1.560 1.257 D 55 53 3 56 3 0 4 118 198 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 10 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 8 120 200 -5.747 -0.055 -5.747 -1.959 1.577 -2.187 -0.889 D 58 56 3 59 3 0 3 116 197 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 9 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 7 118 199 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 61 59 3 62 3 0 2 115 195 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 9 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 7 117 197 -5.747 -0.055 -5.747 -1.370 -1.437 1.551 -1.676 D 64 62 3 65 3 0 2 114 194 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 8 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 6 116 196 -5.747 -0.055 -5.747 1.164 -1.156 -0.591 -0.628 D 67 65 3 68 3 0 1 112 192 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 8 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 5 114 194 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 70 68 3 71 3 0 1 111 191 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 7 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 5 113 193 -5.747 -0.055 -5.747 -1.301 0.196 -1.483 1.064 D 73 71 3 74 3 0 0 110 189 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 6 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 4 112 191 -5.747 -0.055 -5.747 1.496 -1.837 -0.854 -1.525 D 76 74 3 77 3 0 0 108 187 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 6 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - c - - - ML 78 77 3 80 3 1 4 110 189 -5.747 -0.055 -5.747 -0.509 0.601 0.160 -0.593 D 79 77 3 80 3 0 0 107 186 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 81 80 3 83 3 1 3 109 188 -5.747 -0.055 -5.747 -1.595 -0.806 -1.787 1.489 D 82 80 3 83 3 0 0 105 184 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 5 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 3 107 186 -5.747 -0.055 -5.747 1.558 -1.949 -1.065 -1.648 D 85 83 3 86 3 0 0 104 183 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 4 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 3 106 185 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 88 86 3 89 3 0 0 103 181 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 4 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 2 105 183 -5.747 -0.055 -5.747 -1.574 -0.757 -1.766 1.474 D 91 89 3 92 3 0 0 101 180 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - c - - - ML 93 92 3 95 3 1 2 103 182 -5.747 -0.055 -5.747 0.165 0.932 -1.290 -0.831 D 94 92 3 95 3 0 0 100 178 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 2 102 180 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 97 95 3 98 3 0 0 98 176 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 3 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 99 98 3 101 3 1 1 100 178 -5.747 -0.055 -5.747 1.084 -1.456 0.074 -1.108 D 100 98 3 101 3 0 0 97 175 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 1 99 177 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 103 101 3 104 3 0 0 96 173 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 105 104 3 107 3 1 1 97 175 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 106 104 3 107 3 0 0 94 171 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 2 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 1 96 173 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 109 107 3 110 3 0 0 93 170 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 111 110 3 113 3 1 1 95 172 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 112 110 3 113 3 0 0 91 168 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 1 93 170 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 115 113 3 116 3 0 0 90 166 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 117 116 3 119 3 1 1 92 168 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 118 116 3 119 3 0 0 88 165 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 120 119 3 122 3 1 1 90 167 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 121 119 3 122 3 0 0 87 163 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - - - ML 123 122 3 125 3 1 1 89 165 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 124 122 3 125 3 0 0 85 161 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 96 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - C - - - ML 126 125 3 128 3 1 1 87 163 -5.747 -0.055 -5.747 -1.776 1.457 -1.993 -0.491 D 127 125 3 128 3 0 0 84 159 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - C - - - ML 129 128 3 131 3 1 1 86 162 -5.747 -0.055 -5.747 -0.787 1.188 -1.433 -0.373 D 130 128 3 131 3 0 0 82 158 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 132 131 3 134 3 1 1 84 160 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 133 131 3 134 3 0 0 81 156 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 135 134 3 137 3 1 1 83 158 -5.747 -0.055 -5.747 -0.816 -1.666 1.381 -0.965 D 136 134 3 137 3 0 0 79 154 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 90 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - G - - - ML 138 137 3 140 3 1 1 81 156 -5.747 -0.055 -5.747 -2.003 -2.864 1.785 -2.585 D 139 137 3 140 3 0 0 77 152 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - A - - - ML 141 140 3 143 3 1 1 79 154 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 142 140 3 143 3 0 0 76 150 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 88 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - U - - - ML 144 143 3 146 3 1 1 78 152 -5.747 -0.055 -5.747 -2.014 -1.626 -2.188 1.682 D 145 143 3 146 3 0 0 74 148 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - G - - - ML 147 146 3 149 3 1 1 76 151 -5.747 -0.055 -5.747 -2.003 -2.864 1.785 -2.585 D 148 146 3 149 3 0 0 72 146 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 84 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - A - - - ML 150 149 3 152 3 1 1 75 149 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 151 149 3 152 3 0 0 71 144 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 153 152 3 155 3 1 1 73 147 -5.747 -0.055 -5.747 -1.073 -2.350 1.625 -2.034 D 154 152 3 155 3 0 0 69 142 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 71 145 -5.747 -0.055 -5.747 -2.003 -2.864 1.785 -2.585 D 157 155 3 158 3 0 0 67 140 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - A - - - ML 159 158 3 161 3 1 1 69 143 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 160 158 3 161 3 0 0 65 138 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - a - - - ML 162 161 3 164 3 1 1 68 140 -5.747 -0.055 -5.747 0.986 -0.982 -0.615 -0.218 D 163 161 3 164 3 0 0 64 136 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 77 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - a - - - ML 165 164 3 167 3 1 1 66 138 -5.747 -0.055 -5.747 0.885 -1.417 0.378 -1.063 D 166 164 3 167 3 0 0 62 133 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 168 167 3 170 3 1 1 64 136 -5.747 -0.055 -5.747 1.578 -1.989 -1.141 -1.692 D 169 167 3 170 3 0 0 60 131 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - - - ML 171 170 3 173 3 1 1 62 134 -5.747 -0.055 -5.747 -1.574 -0.757 -1.766 1.474 D 172 170 3 173 3 0 0 57 128 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 174 173 3 176 3 1 1 60 131 -5.747 -0.055 -5.747 -2.003 -2.864 1.785 -2.585 D 175 173 3 176 3 0 0 55 126 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - A - - - ML 177 176 3 179 3 1 1 58 128 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 178 176 3 179 3 0 0 52 122 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - A - - - ML 180 179 3 182 3 1 1 55 125 -5.747 -0.055 -5.747 1.109 -1.077 -0.660 -0.442 D 181 179 3 182 3 0 0 49 119 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - G - - - ML 183 182 3 185 3 1 1 52 122 -5.747 -0.055 -5.747 -1.073 -2.350 1.625 -2.034 D 184 182 3 185 3 0 0 44 114 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - A - - - ML 186 185 3 188 3 1 1 48 117 -5.747 -0.055 -5.747 1.789 -2.632 -2.364 -2.401 D 187 185 3 188 3 0 0 32 101 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - G - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -2.003 -2.864 1.785 -2.585 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME NBR2 ACC RF02153 DESC Neighbour of BRCA1 gene 2 converved region LENG 63 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 04:02:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02153/CM NSEQ 26 EFFN 3.170654 CKSUM 729885373 STATS LOCAL MSV -8.5198 0.71888 STATS LOCAL VITERBI -8.7162 0.71888 STATS LOCAL FORWARD -3.5071 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.00943 1.99038 1.47592 1.30799 1.38629 1.38629 1.38629 1.38629 0.02227 5.11791 4.13273 0.39730 1.11515 0.00000 * 1 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 2 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 3 0.62115 2.13009 1.83565 1.69099 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 4 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 5 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 6 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 7 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98354 3.98354 1.46634 0.26236 1.09861 0.40547 8 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 9 2.29021 2.23821 1.94765 0.43156 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98354 3.98354 1.46634 0.26236 1.09861 0.40547 10 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 11 2.96719 0.19583 3.11861 2.49884 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 12 0.40052 2.58483 1.83052 2.36139 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 13 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 14 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 15 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 16 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 17 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 18 2.33922 1.50868 2.46754 0.51483 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 19 2.74433 0.29329 2.90238 2.00239 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 20 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 21 2.33597 2.38219 0.31099 2.54828 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 22 0.57960 2.18780 1.79604 1.82165 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 23 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 24 2.28803 1.25038 2.41438 0.64872 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 25 0.34969 2.65980 1.97852 2.44350 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 26 1.73925 0.96973 1.27516 1.79711 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 27 2.49185 1.94483 2.62477 0.35414 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 28 0.30655 2.73706 2.12467 2.52836 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 29 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 30 2.47760 1.91102 2.61030 0.36440 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 31 1.27216 0.74032 2.28030 1.96212 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 32 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 33 0.63518 2.39577 1.33534 2.15426 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 34 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98354 3.98354 1.46634 0.26236 1.09861 0.40547 35 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 36 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 37 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 38 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 39 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 40 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 41 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 42 2.61742 0.37646 2.76747 1.72652 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 43 1.93169 0.56310 2.37955 1.64474 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 44 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 45 1.95182 2.54112 0.42906 2.05504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 46 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 47 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 48 2.78206 2.51362 2.90281 0.22034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 49 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 50 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 51 2.13018 3.01525 0.25995 2.79584 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 52 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 53 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 54 0.70259 2.06690 1.81259 1.53764 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 55 0.77277 2.36877 1.12394 2.12297 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 56 0.29264 2.76515 2.17701 2.55927 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 57 2.47760 1.91102 2.61030 0.36440 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 58 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 59 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 60 0.61756 2.13272 1.84371 1.69282 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 61 2.13018 3.01525 0.25995 2.79584 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 62 0.14645 3.21079 3.02478 3.05042 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03795 3.98353 3.98353 1.46634 0.26236 1.09861 0.40547 63 2.77471 3.37126 0.14894 3.17800 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //