# STOCKHOLM 1.0
#=GF ID MESTIT1_1
#=GF AC RF02148
#=GF DE MEST intronic transcript 1, antisense RNA conserved region 1
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 50.0
#=GF NC 48.5
#=GF TC 51.7
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 34.38 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 12095916
#=GF RT Identification and characterization of an imprinted antisense RNA
#=GF RT (MESTIT1) in the human MEST locus on chromosome 7q32.
#=GF RA Nakabayashi K, Bentley L, Hitchins MP, Mitsuya K, Meguro M, Minagawa S,
#=GF RA Bamforth JS, Stanier P, Preece M, Weksberg R, Oshimura M, Moore GE,
#=GF RA Scherer SW
#=GF RL Hum Mol Genet. 2002;11:1743-1756.
#=GF WK MESTIT1_(gene)
#=GF SQ 16

AF482998.1/2816-2677       UGUCAUUUAGGUUCAUCUUAUUUGGGUAAGAGAUU-AUUCAGUUCCACUGCUU-CCCUCGUCUGCCACUCAUCUUUUGAG--C-----------UUUUUACAGCCAAA-CACUUUUACUCAAAAAUGGGCCUGAAG-----AGGAACACACCAGUAGCUUC-
AANU01033463.1/1093-1232   UGUCAUUUAGGGUCAUCUUAUUUGGGUAAGAGGUU-AUUCAGUUCCACUGCUU-CCUUCGUCUACCACUCAUCUUUUGAG--C-----------UUUUUACAGCCAAA-GACUUUUACUCAAAAUUGGGCCUGAAG-----AGGAAGACACCAGUCGCUUC-
ABRN01099754.1/4181-4038   AGUCUCUUAGGUUUAUCUUAUCUGGUUAAUGGGUU-AUCCAGCUCCCUUGCUU-CUCUCCUCUCCCACUUAUCUUUUGAA--C-----------UUUUUUCAGCCAAA-GAUUUUUACCCAAAAACGAGCCUGAAG-AGGAAGGAAGACACCAGUCGCCUU-
ABRP01251556.1/3260-3116   UGCCACUUAGGUUCAUUUUAUCCGGUUAAUGGAUU-UUUCAGCCCCAUUGCUU-CCCUGCUCUACCACUCAUCUUUUGAA--C-----------UUCUUGCACUCAAA-GACUUUUACCCAAAAAUGAGGAUAAAAGAGGAAGGAAGAUACCAGUCACUUU-
ABDC01335509.1/126-264     UGUCAUUGAGCUGCAUC-----UGGAUACGGGAUA-AUUCUGCUCUGGUGCUU-CCCUCCUCUACCGUUCAUCUGUUGAG--C-----------UUUUUGCAGCCAAA-GACUUUUACCCAAAAAUGAACCUGAAA-AGGGAGGAAGACACCAGUCACUUC-
ABRR01314427.1/2379-2236   UGUCUGUGAAGUUUAUCUUAUCUGGUUAAUGGGUU-AUUCAGCUCCCUUGCUU-CUCUCCUCUCCCACAUUUCUUUUGAACUC-----------UUUUUUCAGCCAAA-GACUUUUACCCAAAAAUGAGCUUU--G-AAGAGGAAAGACACCAGUUGCUUU-
ABVD01564453.1/953-814     UGUCAUUUAGGUUUAUUUUAUCUGCUGAGUGGAUU-AUCCAUUUCCUUUGCUU------CUUUACCACUCAUCUUUUGAG--C-----------UUCUUGCGGUCAAA-GACUUUUACCCAAAAAUGAGCCUGAAGAGGGAAGGAAGAUACCAGUCACUUU-
ABRQ01225307.1/11473-11332 UGUCACUUAGGGUCAUCUUAUCUUGCUCAUGGAAU-AUUCAGCUCGUUUGUUU-CUCUUGUUUGCCAUUCAUCUCUUGAG--C-----------UUUUCACAGCCAGG-CAAUUUUAUCCAG--AACAACCUGAAG-AGGUAGGAAGACUCCAGUCGCUUC-
AAWR02014504.1/35946-36090 UUUCACUUAGAUUCAUGGGAUCUGGUUCAUGCAGU-CUUCUGCUCCCUUGCUUUCUCUCCUCUACCACUCAUCUUAUGAA--C-----------GUUUUGCAGCCAAA-GACUUUUACCCAAAAAUGAGCCUGAAG-GGGAAGGAAGACACUAGUCACUUU-
ACBE01084549.1/1440-1309   UGUCGCUUAGGUUCGUUUUCUCUGGCUAACGGAUU-AUUCA-CCUUGAUGCUU------CUCUAC--CACACCUUUUGAA--C-----------UUUCUGCAGCCAAA-GACUUUUACCCAGACAUGAGCCUGAAG-AGGAAAAAAAAAAAAAAAAA-----
AAGV020321980.1/3248-3120  --UCAUUUAGGUUUAUUUUAUCUGGUUAAUGGAUU-AUGCAGUUCCUUUGCUU------CUUUACCACUUAUCUUUUGAG--U-----------UUUU----GUCAAA-GAUUUUAUCCCAAAAACCAGUCUGAAG-AAGGAGGAAGACAAC----GCUUU-
ABRO01035231.1/14282-14134 UGUCCUUUGGGUUCAUCUCAUCUGGCUGAGAGAUU-AUUUCAUUCCUUUGCUG-CUGCU-UCUAACACU-ACCUUUGGAU--UUCCCCCCCACCUUUUUUUAUGCAAA-GAAUUCUACCCCUAAAUGAGACUGAAG-AGGGAGGA-AACAUUAGUCA----U
AAKN02017560.1/9880-10011  UAUUCUUUGAGUUUGUUUUAUGUAGUUAAG---UA-AUUCAGCUGUGUUGCUU-CCCUUCUCUACCAUUCAUCUUUGGAGU-U-----------UUUUUUUUUU--------UUUAACCCAAAAAUGAACCUGAAA-GGGAAGGAGAACAUUAAUUGC----
AAEX03009252.1/23249-23116 UGUCACUUAGGUUCAUUUUAUCUGGUUAAUGGAUU-AUUCA--CUUUUUGCUU------CUCUGCCGCACAUCUUUUGAAA-C-----------UUUCUGCAGCCAAA-GACUUUUACCCAAAAAUGAGCUUGAAG-----AGGAAAAUACCAGUCACUUU-
AAQR03184722.1/12928-12786 UGCCAUUUAGAUUCAUCCUGUCUGGAUAAGGGGGUUAUUCAGCUC-AGUGCUU-CCCUCCUCUACCACUUAUUUGUUGAA--U-----------GUUUUGUAGCCA--AGACUUUUACCCAAA-AAUGAGCCGGAAGAGGGAGAAUGACACGAGUCACUUC-
AAGW02039137.1/31744-31877 UGCCAGUUAGGCUCCUCUUAUUUGGUUACAGGCGG-AGUUAGCACCUUCGCUU-----CCUCUACCACUCAUCCUUGGAG--C-----------UUUUUGCAGCCAAA-AAUGUAUACCAAAAAAUGAGCGUUGAA-------GAAGGUGCCAUUCCCCUU-
#=GC SS_cons               :::::::::::::::::::::::::::::::::::.:::::::::::::::::.::::::::::::::::::::::::::..:...........::::::::::::::.:::::::::::::::::::::::::::.::::::::::::::::::::::::.
#=GC RF                    UGUCauUUAGGuUCaUcUUaUcUGGuUaauGGauu.AUUCaGcuCcuuUGCUU.CucUcCUCUaCCACUCAUCUuUuGAg..C...........UUUUUgCAGcCAAA.GAcUUUUACCCAaAAAuGAGccUGAAG.aGGaAGGAaGAcaccAGUcgCUUu.
//
