INFERNAL1/a [1.1.4 | Dec 2020] NAME MEG8_3 ACC RF02147 DESC Maternally expressed 8 exon 3 STATES 202 NODES 68 CLEN 66 W 143 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:50:08 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 4.555664 CKSUM 576239823 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 41.20 NC 37.90 EFP7GF -10.6451 0.71879 ECMLC 0.68406 -10.05034 -0.46634 1600000 844201 0.001421 ECMGC 0.36827 -21.71718 -6.30493 1600000 116698 0.003428 ECMLI 0.66007 -8.54879 0.67097 1600000 527412 0.002275 ECMGI 0.40540 -14.09580 -1.19468 1600000 74729 0.005353 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 143 225 -7.752 -7.959 -0.030 -6.373 IL 1 1 2 1 4 1 25 145 227 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 145 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 25 143 225 -6.078 -0.043 -6.078 -2.708 -2.201 -2.902 1.806 D 4 2 3 5 3 0 20 140 222 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 26 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 24 142 224 -6.078 -0.043 -6.078 -1.987 -0.621 -2.200 1.526 D 7 5 3 8 3 0 19 139 220 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 25 149 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 23 141 222 -6.078 -0.043 -6.078 -2.502 -3.552 1.862 -3.280 D 10 8 3 11 3 0 18 138 219 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 25 148 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 22 140 221 -6.078 -0.043 -6.078 -0.946 -2.743 1.653 -2.416 D 13 11 3 14 3 0 17 137 218 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 24 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 22 138 220 -6.078 -0.043 -6.078 -2.949 1.824 -3.196 -2.182 D 16 14 3 17 3 0 17 135 216 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 23 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 21 137 218 -6.078 -0.043 -6.078 -1.609 -1.551 -0.699 1.441 D 19 17 3 20 3 0 16 134 215 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 22 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 20 136 217 -6.078 -0.043 -6.078 -1.951 -0.523 -2.162 1.497 D 22 20 3 23 3 0 15 133 213 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 22 143 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 19 135 215 -6.078 -0.043 -6.078 -1.579 -0.984 1.527 -1.846 D 25 23 3 26 3 0 14 131 212 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 21 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 19 133 214 -6.078 -0.043 -6.078 -1.425 -1.440 -0.314 1.296 D 28 26 3 29 3 0 14 130 211 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 20 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 18 132 212 -6.078 -0.043 -6.078 -1.943 -0.499 -2.153 1.489 D 31 29 3 32 3 0 13 129 209 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 19 139 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 17 131 211 -6.078 -0.043 -6.078 -2.281 1.543 -2.524 -0.503 D 34 32 3 35 3 0 12 128 208 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 19 138 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 16 129 210 -6.078 -0.043 -6.078 1.040 -0.651 -0.438 -0.816 D 37 35 3 38 3 0 11 126 206 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 18 136 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 16 128 208 -6.078 -0.043 -6.078 1.887 -3.501 -3.166 -3.300 D 40 38 3 41 3 0 11 125 205 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 17 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 15 127 207 -6.078 -0.043 -6.078 0.339 -2.040 1.125 -1.685 D 43 41 3 44 3 0 10 124 203 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 17 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 14 126 205 -6.078 -0.043 -6.078 -1.609 -1.551 -0.699 1.441 D 46 44 3 47 3 0 9 122 202 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 16 133 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 14 124 204 -6.078 -0.043 -6.078 -2.949 1.824 -3.196 -2.182 D 49 47 3 50 3 0 8 121 201 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 15 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 13 123 202 -6.078 -0.043 -6.078 1.887 -3.501 -3.166 -3.300 D 52 50 3 53 3 0 8 120 199 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 14 130 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 12 122 201 -6.078 -0.043 -6.078 -2.502 -3.552 1.862 -3.280 D 55 53 3 56 3 0 7 119 198 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 14 129 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 12 120 200 -6.078 -0.043 -6.078 -2.024 -0.720 -2.239 1.554 D 58 56 3 59 3 0 6 117 196 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 13 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 11 119 198 -6.078 -0.043 -6.078 -2.502 -3.552 1.862 -3.280 D 61 59 3 62 3 0 6 116 195 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 12 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 10 118 197 -6.078 -0.043 -6.078 -2.708 -2.201 -2.902 1.806 D 64 62 3 65 3 0 5 115 193 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 12 125 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - c - - - ML 66 65 3 68 3 1 10 116 195 -6.078 -0.043 -6.078 -1.767 0.853 -1.968 0.717 D 67 65 3 68 3 0 4 113 192 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 11 124 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 9 115 194 -6.078 -0.043 -6.078 -2.949 1.824 -3.196 -2.182 D 70 68 3 71 3 0 4 112 190 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 10 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - A - - - ML 72 71 3 74 3 1 8 114 192 -6.078 -0.043 -6.078 1.887 -3.501 -3.166 -3.300 D 73 71 3 74 3 0 3 111 189 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 10 121 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 8 112 191 -6.078 -0.043 -6.078 1.334 -1.973 -0.149 -1.632 D 76 74 3 77 3 0 2 109 187 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 9 120 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 7 111 189 -6.078 -0.043 -6.078 1.614 -2.384 -0.973 -2.075 D 79 77 3 80 3 0 2 108 186 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 8 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - c - - - ML 81 80 3 83 3 1 6 110 188 -6.078 -0.043 -6.078 -0.493 0.772 -1.301 0.234 D 82 80 3 83 3 0 1 107 184 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 8 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 6 108 186 -6.078 -0.043 -6.078 -2.024 -0.720 -2.239 1.554 D 85 83 3 86 3 0 1 105 183 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 7 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - c - - - ML 87 86 3 89 3 1 5 107 185 -6.078 -0.043 -6.078 0.590 0.771 -1.595 -1.130 D 88 86 3 89 3 0 0 104 181 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 7 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 5 106 183 -6.078 -0.043 -6.078 -2.708 -2.201 -2.902 1.806 D 91 89 3 92 3 0 0 102 180 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 6 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - u - - - ML 93 92 3 95 3 1 4 104 182 -6.078 -0.043 -6.078 -1.737 0.681 -1.935 0.876 D 94 92 3 95 3 0 0 101 178 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 6 112 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 4 103 180 -6.078 -0.043 -6.078 -0.801 -1.586 -1.902 1.498 D 97 95 3 98 3 0 0 100 177 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 5 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 99 98 3 101 3 1 3 102 179 -6.078 -0.043 -6.078 -2.949 1.824 -3.196 -2.182 D 100 98 3 101 3 0 0 98 175 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 5 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - C - - - ML 102 101 3 104 3 1 3 100 177 -6.078 -0.043 -6.078 -2.385 1.607 -2.638 -0.735 D 103 101 3 104 3 0 0 97 174 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 4 108 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 105 104 3 107 3 1 2 99 176 -6.078 -0.043 -6.078 -1.943 -0.499 -2.153 1.489 D 106 104 3 107 3 0 0 96 172 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 4 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - G - - - ML 108 107 3 110 3 1 2 97 174 -6.078 -0.043 -6.078 -0.762 -2.648 1.609 -2.315 D 109 107 3 110 3 0 0 94 170 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 3 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - - - ML 111 110 3 113 3 1 2 96 172 -6.078 -0.043 -6.078 -2.949 1.824 -3.196 -2.182 D 112 110 3 113 3 0 0 93 169 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 3 104 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 1 95 171 -6.078 -0.043 -6.078 1.145 -0.600 -1.303 -0.466 D 115 113 3 116 3 0 0 91 167 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 2 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - c - - - ML 117 116 3 119 3 1 1 93 169 -6.078 -0.043 -6.078 -1.046 0.726 0.064 -0.292 D 118 116 3 119 3 0 0 90 166 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 120 119 3 122 3 1 1 92 168 -3.341 -0.174 -6.078 -2.708 -2.201 -2.902 1.806 D 121 119 3 122 3 0 0 89 165 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 92 168 -4.890 -0.050 -12.533 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - U - - - ML 123 122 3 125 3 1 1 91 167 -6.078 -0.043 -6.078 -2.708 -2.201 -2.902 1.806 D 124 122 3 125 3 0 0 88 163 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 99 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - U - - - ML 126 125 3 128 3 1 1 89 165 -6.078 -0.043 -6.078 -2.708 -2.201 -2.902 1.806 D 127 125 3 128 3 0 0 86 162 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - C - - - ML 129 128 3 131 3 1 1 88 163 -6.078 -0.136 -3.730 -2.127 1.567 -1.045 -1.633 D 130 128 3 131 3 0 0 85 160 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 96 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 132 131 3 134 3 1 1 86 162 -2.002 -0.445 -5.988 1.867 -3.266 -2.955 -3.056 D 133 131 3 134 3 0 0 84 159 -12.792 -0.478 -1.827 IL 134 134 3 134 3 1 2 87 162 -1.279 -0.766 -14.630 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - G - - - ML 135 134 3 137 3 1 1 85 160 -6.078 -0.043 -6.078 0.484 -1.968 1.014 -1.611 D 136 134 3 137 3 0 0 82 156 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - G - - - ML 138 137 3 140 3 1 1 83 158 -6.078 -0.043 -6.078 -1.638 -1.322 1.600 -2.011 D 139 137 3 140 3 0 0 80 155 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 92 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - G - - - ML 141 140 3 143 3 1 1 82 157 -6.078 -0.043 -6.078 -0.916 -2.727 1.646 -2.400 D 142 140 3 143 3 0 0 79 153 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - G - - - ML 144 143 3 146 3 1 1 80 155 -6.078 -0.043 -6.078 -2.502 -3.552 1.862 -3.280 D 145 143 3 146 3 0 0 77 151 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 89 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - G - - - ML 147 146 3 149 3 1 1 79 153 -6.078 -0.043 -6.078 -1.484 -0.391 1.345 -1.557 D 148 146 3 149 3 0 0 75 149 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - C - - - ML 150 149 3 152 3 1 1 77 152 -6.078 -0.043 -6.078 -0.340 1.371 -2.018 -1.406 D 151 149 3 152 3 0 0 74 148 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - a - - - ML 153 152 3 155 3 1 1 76 150 -6.078 -0.043 -6.078 0.680 -0.574 -0.413 -0.037 D 154 152 3 155 3 0 0 72 146 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 85 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - C - - - ML 156 155 3 158 3 1 1 74 148 -6.078 -0.043 -6.078 -2.949 1.824 -3.196 -2.182 D 157 155 3 158 3 0 0 71 144 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - U - - - ML 159 158 3 161 3 1 1 73 146 -6.078 -0.043 -6.078 -1.798 -0.014 -1.999 1.305 D 160 158 3 161 3 0 0 69 142 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - G - - - ML 162 161 3 164 3 1 1 71 144 -6.078 -0.043 -6.078 -0.916 -2.727 1.646 -2.400 D 163 161 3 164 3 0 0 67 140 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - G - - - ML 165 164 3 167 3 1 1 70 142 -6.078 -0.043 -6.078 -2.502 -3.552 1.862 -3.280 D 166 164 3 167 3 0 0 66 138 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 79 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - G - - - ML 168 167 3 170 3 1 1 68 140 -6.078 -0.043 -6.078 -2.502 -3.552 1.862 -3.280 D 169 167 3 170 3 0 0 64 136 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - g - - - ML 171 170 3 173 3 1 1 66 138 -6.078 -0.043 -6.078 0.243 -0.683 0.728 -0.897 D 172 170 3 173 3 0 0 62 134 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - U - - - ML 174 173 3 176 3 1 1 64 136 -6.078 -0.043 -6.078 -1.844 -0.192 -2.049 1.381 D 175 173 3 176 3 0 0 60 132 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - U - - - ML 177 176 3 179 3 1 1 63 134 -6.078 -0.043 -6.078 -1.690 -1.600 -0.854 1.489 D 178 176 3 179 3 0 0 58 129 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 63 - c - - - ML 180 179 3 182 3 1 1 61 132 -6.078 -0.043 -6.078 0.203 0.388 -0.494 -0.269 D 181 179 3 182 3 0 0 56 127 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 64 - U - - - ML 183 182 3 185 3 1 1 59 130 -6.078 -0.043 -6.078 -1.735 0.373 -1.933 1.099 D 184 182 3 185 3 0 0 54 124 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 65 - a - - - ML 186 185 3 188 3 1 1 56 127 -6.078 -0.043 -6.078 0.917 -0.668 -0.153 -0.778 D 187 185 3 188 3 0 0 51 121 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 67 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 66 - G - - - ML 189 188 3 191 3 1 1 54 124 -6.078 -0.043 -6.078 -0.972 -2.756 1.658 -2.430 D 190 188 3 191 3 0 0 48 118 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 66 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 67 - a - - - ML 192 191 3 194 3 1 1 51 121 -6.078 -0.043 -6.078 0.872 -0.627 -0.101 -0.763 D 193 191 3 194 3 0 0 43 113 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 68 - A - - - ML 195 194 3 197 3 1 1 47 116 -6.078 -0.043 -6.078 1.887 -3.501 -3.166 -3.300 D 196 194 3 197 3 0 0 32 101 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 69 - G - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.886 -2.712 1.639 -2.383 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 67 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME MEG8_3 ACC RF02147 DESC Maternally expressed 8 exon 3 LENG 66 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:50:08 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 4.555664 STATS LOCAL MSV -8.1642 0.71879 STATS LOCAL VITERBI -8.8053 0.71879 STATS LOCAL FORWARD -3.6530 0.71879 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56184 1.45698 1.31838 1.23877 1.38629 1.38629 1.38629 1.38629 0.01721 5.37320 4.38802 0.39730 1.11515 0.00000 * 1 3.26330 2.91212 3.39756 0.13476 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 2 2.76336 1.81705 2.91094 0.32852 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 3 3.12061 3.84867 0.09560 3.65998 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 4 2.04199 3.28726 0.24076 3.06098 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 5 3.43009 0.12191 3.60182 2.89843 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 6 2.50127 2.46161 1.87086 0.38753 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 7 2.73847 1.74847 2.88461 0.34897 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 8 2.48048 2.06853 0.32794 2.66617 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 9 2.37412 2.38476 1.60409 0.48821 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 10 2.73281 1.73245 2.87863 0.35396 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 11 2.96726 0.31644 3.13607 1.73519 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 12 0.66520 1.83729 1.68958 1.95205 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 13 0.07831 3.81316 3.58057 3.67372 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 14 1.15154 2.80001 0.60649 2.55392 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 15 2.50127 2.46161 1.87086 0.38753 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 16 3.43009 0.12191 3.60182 2.89843 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 17 0.07831 3.81316 3.58057 3.67372 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 18 3.12061 3.84867 0.09560 3.65998 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 19 2.78923 1.88553 2.93824 0.30949 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 20 3.12061 3.84867 0.09560 3.65998 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 21 3.26330 2.91212 3.39756 0.13476 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 22 2.61095 0.79470 2.75028 0.88939 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 23 3.43009 0.12191 3.60182 2.89843 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 24 0.07831 3.81316 3.58057 3.67372 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 25 0.46171 2.75394 1.48970 2.51733 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 26 0.26729 3.03891 2.06103 2.82442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 27 1.72823 0.85133 2.28838 1.22376 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 28 2.78923 1.88553 2.93824 0.30949 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 29 0.97755 0.85155 2.49180 2.16932 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 30 3.26330 2.91212 3.39756 0.13476 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 31 2.59008 0.91411 2.72785 0.77924 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 32 1.94133 2.48536 2.70450 0.34773 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 33 3.43009 0.12191 3.60182 2.89843 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 34 3.03949 0.27210 3.21495 1.89574 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 35 2.73281 1.73245 2.87863 0.35396 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 36 1.91474 3.22147 0.27118 2.99088 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 37 3.43009 0.12191 3.60182 2.89843 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 38 0.59283 1.80213 2.28971 1.70927 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 39 2.11119 0.88321 1.34199 1.58900 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 40 3.26330 2.91212 3.39756 0.13476 - U - - : 1.38629 1.38629 1.38629 1.38629 0.12047 2.31578 4.21297 0.03433 3.38898 1.09861 0.40547 41 3.26330 2.91212 3.39756 0.13476 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 42 3.26330 2.91212 3.39756 0.13476 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 43 2.86072 0.29979 2.11043 2.51812 - C - - : 1.38629 1.38629 1.38629 1.38629 0.09451 4.21297 2.58519 1.46634 0.26236 1.09861 0.40547 44 0.09244 3.64978 3.43440 3.50474 - A - - : 1.38629 1.38629 1.38629 1.38629 0.30841 1.38777 4.15047 0.53110 0.88663 0.33127 1.26590 45 1.05114 2.75007 0.68376 2.50324 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 46 2.52151 2.30236 0.27760 2.77999 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 47 2.02116 3.27655 0.24544 3.04954 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 48 3.12061 3.84867 0.09560 3.65998 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 49 2.41501 1.65750 0.45404 2.46554 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 50 1.62209 0.43621 2.78513 2.36113 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 51 0.91479 1.78386 1.67268 1.41195 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 52 3.43009 0.12191 3.60182 2.89843 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 53 2.63227 1.39574 2.77212 0.48142 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 54 2.02116 3.27655 0.24544 3.04954 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 55 3.12061 3.84867 0.09560 3.65998 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 56 3.12061 3.84867 0.09560 3.65998 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 57 1.21777 1.85951 0.88160 2.00809 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 58 2.66454 1.51939 2.80630 0.42910 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 59 2.55788 2.49562 1.97819 0.35416 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 60 1.24560 1.11704 1.72881 1.57268 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 61 2.58857 1.12764 2.72595 0.62438 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 62 0.75099 1.84900 1.49213 1.92544 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 63 2.05997 3.29649 0.23680 3.07087 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 64 0.78164 1.82059 1.45632 1.91513 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 65 0.07831 3.81316 3.58057 3.67372 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03005 4.21297 4.21297 1.46634 0.26236 1.09861 0.40547 66 2.00032 3.26582 0.25024 3.03808 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //