INFERNAL1/a [1.1.5 | Sep 2023] NAME HOXA11-AS1_3 ACC RF02139 DESC HOXA11 antisense RNA 1 conserved region 3 STATES 298 NODES 100 CLEN 98 W 189 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 06:02:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02139/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 24 EFFN 2.780273 CKSUM 2782322208 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 59.00 NC 38.50 EFP7GF -6.2856 0.71830 ECMLC 0.70153 -10.54794 -1.48895 1600000 690535 0.001738 ECMGC 0.36532 -17.81028 -6.10065 1600000 28833 0.013873 ECMLI 0.46336 -11.66838 0.82495 1600000 391990 0.003061 ECMGI 0.40415 -7.75823 2.64851 1600000 26832 0.014908 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 189 277 -7.260 -7.467 -0.043 -5.881 IL 1 1 2 1 4 12 48 191 279 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 12 47 190 278 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 12 47 189 277 -5.638 -0.059 -5.638 -0.573 0.155 -0.603 0.638 D 4 2 3 5 3 7 43 186 274 -11.551 -1.585 -0.585 IL 5 5 3 5 3 13 49 195 284 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 11 46 188 276 -5.638 -0.059 -5.638 -1.351 -1.953 1.562 -1.336 D 7 5 3 8 3 7 42 185 272 -11.551 -1.585 -0.585 IL 8 8 3 8 3 13 48 194 282 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 11 45 186 274 -5.638 -0.059 -5.638 -1.595 1.399 -1.799 -0.425 D 10 8 3 11 3 6 41 183 271 -11.551 -1.585 -0.585 IL 11 11 3 11 3 12 47 192 281 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 10 45 185 273 -5.638 -0.059 -5.638 -1.573 1.380 -1.776 -0.377 D 13 11 3 14 3 6 40 182 270 -11.551 -1.585 -0.585 IL 14 14 3 14 3 11 46 191 280 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 9 44 184 271 -4.514 -0.095 -5.638 -0.847 -0.685 -0.419 1.053 D 16 14 3 17 3 5 39 181 268 -11.551 -1.585 -0.585 IL 17 17 3 17 3 10 44 184 272 -2.849 -0.217 -10.493 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - G - - - ML 18 17 3 20 3 9 43 183 270 -5.638 -0.059 -5.638 -1.104 -2.217 1.610 -1.905 D 19 17 3 20 3 5 39 180 267 -11.551 -1.585 -0.585 IL 20 20 3 20 3 10 45 189 277 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - G - - - ML 21 20 3 23 3 8 42 182 269 -5.638 -0.087 -4.709 -1.834 -2.625 1.749 -2.344 D 22 20 3 23 3 4 38 179 266 -11.551 -1.585 -0.585 IL 23 23 3 23 3 10 44 188 276 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - U - - - ML 24 23 3 26 3 8 41 180 268 -5.612 -0.060 -5.612 -1.325 -0.548 -1.503 1.358 D 25 23 3 26 3 4 37 177 264 -11.931 -1.966 -0.427 IL 26 26 3 26 3 10 43 186 274 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - C - - - ML 27 26 3 29 3 8 41 179 266 -5.612 -0.060 -5.612 -1.705 1.534 -1.504 -1.172 D 28 26 3 29 3 3 36 176 263 -11.931 -1.966 -0.427 IL 29 29 3 29 3 9 42 185 273 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - U - - - ML 30 29 3 32 3 7 40 178 265 -5.612 -0.060 -5.612 -1.743 -1.403 -1.907 1.612 D 31 29 3 32 3 3 36 175 262 -11.931 -1.036 -0.966 IL 32 32 3 32 3 8 42 184 272 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - U - - - ML 33 32 3 35 3 7 39 177 264 -5.638 -0.059 -5.638 -1.018 -0.684 -0.826 1.214 D 34 32 3 35 3 2 35 174 260 -11.551 -1.585 -0.585 IL 35 35 3 35 3 8 41 183 270 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - c - - - ML 36 35 3 38 3 6 38 175 262 -5.638 -0.059 -5.638 -0.649 0.900 -0.640 -0.226 D 37 35 3 38 3 2 34 172 259 -11.551 -1.585 -0.585 IL 38 38 3 38 3 7 40 181 269 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - U - - - ML 39 38 3 41 3 6 37 174 261 -5.638 -0.059 -5.638 -0.596 -0.646 -0.521 1.002 D 40 38 3 41 3 2 33 171 257 -11.551 -1.585 -0.585 IL 41 41 3 41 3 7 39 180 268 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - G - - - ML 42 41 3 44 3 5 37 173 259 -5.638 -0.059 -5.638 -0.881 -2.093 1.551 -1.770 D 43 41 3 44 3 1 32 170 256 -11.551 -1.585 -0.585 IL 44 44 3 44 3 7 38 179 266 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - G - - - ML 45 44 3 47 3 5 36 172 258 -5.638 -0.059 -5.638 -0.473 -1.162 1.240 -1.089 D 46 44 3 47 3 1 32 168 255 -11.551 -1.585 -0.585 IL 47 47 3 47 3 6 38 178 265 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - a - - - ML 48 47 3 50 3 4 35 170 257 -5.638 -0.059 -5.638 0.728 -0.403 -0.193 -0.487 D 49 47 3 50 3 1 31 167 253 -11.551 -1.585 -0.585 IL 50 50 3 50 3 6 37 176 263 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - G - - - ML 51 50 3 53 3 4 34 169 255 -5.638 -0.059 -5.638 -0.785 -2.039 1.522 -1.712 D 52 50 3 53 3 0 30 166 252 -11.551 -1.585 -0.585 IL 53 53 3 53 3 5 36 175 262 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - C - - - ML 54 53 3 56 3 3 33 168 254 -5.638 -0.059 -5.638 -1.413 1.358 -0.836 -0.995 D 55 53 3 56 3 0 29 165 250 -11.551 -1.585 -0.585 IL 56 56 3 56 3 5 35 174 261 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - u - - - ML 57 56 3 59 3 3 33 166 252 -5.638 -0.085 -4.753 -0.858 0.036 -0.752 0.871 D 58 56 3 59 3 0 29 163 249 -11.551 -1.585 -0.585 IL 59 59 3 59 3 4 35 173 259 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 60 59 3 62 3 3 32 165 251 -5.613 -0.060 -5.613 -1.795 -2.571 1.739 -2.288 D 61 59 3 62 3 0 28 162 247 -11.910 -1.944 -0.435 IL 62 62 3 62 3 4 34 171 258 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - A - - - ML 63 62 3 65 3 3 31 164 250 -5.613 -0.060 -5.613 1.352 -1.537 -0.572 -1.215 D 64 62 3 65 3 0 27 161 246 -11.910 -1.944 -0.435 IL 65 65 3 65 3 4 33 170 257 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - G - - - ML 66 65 3 68 3 2 30 163 248 -5.613 -0.060 -5.613 -0.399 -0.965 1.089 -0.733 D 67 65 3 68 3 0 27 160 245 -11.910 -1.059 -0.944 IL 68 68 3 68 3 3 32 169 255 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 69 68 3 71 3 2 29 161 247 -5.638 -0.059 -5.638 -1.834 -2.625 1.749 -2.344 D 70 68 3 71 3 0 26 158 243 -11.551 -1.585 -0.585 IL 71 71 3 71 3 3 31 168 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 72 71 3 74 3 2 29 160 245 -5.638 -0.059 -5.638 0.898 -0.707 -0.217 -0.590 D 73 71 3 74 3 0 25 157 242 -11.551 -1.585 -0.585 IL 74 74 3 74 3 3 30 166 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - c - - - ML 75 74 3 77 3 1 28 159 244 -5.638 -0.059 -5.638 -0.284 0.951 -0.746 -0.622 D 76 74 3 77 3 0 24 156 241 -11.551 -1.585 -0.585 IL 77 77 3 77 3 2 29 165 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - U - - - ML 78 77 3 80 3 1 27 157 242 -5.638 -0.126 -3.981 -0.860 -0.489 -0.592 1.052 D 79 77 3 80 3 0 24 155 240 -11.551 -1.585 -0.585 IL 80 80 3 80 3 2 29 164 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - C - - - ML 81 80 3 83 3 1 26 156 241 -5.574 -0.112 -4.220 -1.491 1.360 -1.688 -0.384 D 82 80 3 83 3 0 23 154 239 -12.332 -0.709 -1.366 IL 83 83 3 83 3 2 28 162 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - G - - - ML 84 83 3 86 3 1 25 155 240 -5.592 -0.061 -5.592 -0.658 -0.921 1.230 -1.020 D 85 83 3 86 3 0 22 153 237 -12.154 -0.834 -1.188 IL 86 86 3 86 3 1 27 161 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - G - - - ML 87 86 3 89 3 1 25 154 238 -5.638 -0.059 -5.638 -1.834 -2.625 1.749 -2.344 D 88 86 3 89 3 0 20 151 235 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 26 160 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - G - - - ML 90 89 3 92 3 1 24 152 237 -5.638 -0.059 -5.638 -1.136 -2.235 1.618 -1.924 D 91 89 3 92 3 0 19 149 233 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 26 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 93 92 3 95 3 1 23 151 235 -5.638 -0.059 -5.638 1.195 -1.417 -0.215 -1.078 D 94 92 3 95 3 0 19 148 232 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 25 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - A - - - ML 96 95 3 98 3 1 23 150 234 -5.638 -0.059 -5.638 1.368 -0.896 -1.329 -1.049 D 97 95 3 98 3 0 18 147 231 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 24 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 22 148 232 -4.582 -0.092 -5.638 1.285 -1.488 -0.398 -1.157 D 100 98 3 101 3 0 17 146 230 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 22 149 233 -2.745 -0.234 -10.389 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - C - - - ML 102 101 3 104 3 1 21 147 231 -5.638 -0.059 -5.638 -0.938 1.206 -1.422 -0.324 D 103 101 3 104 3 0 16 144 228 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 23 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - C - - - ML 105 104 3 107 3 1 20 146 230 -5.638 -0.059 -5.638 -1.542 1.441 -1.096 -1.078 D 106 104 3 107 3 0 16 143 227 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 22 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - a - - - ML 108 107 3 110 3 1 20 145 229 -5.638 -0.059 -5.638 0.392 -0.397 0.284 -0.495 D 109 107 3 110 3 0 15 142 225 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 21 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - u - - - ML 111 110 3 113 3 1 19 143 227 -5.638 -0.059 -5.638 -0.094 -0.567 -0.322 0.667 D 112 110 3 113 3 0 14 140 224 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 21 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 114 113 3 116 3 1 18 142 226 -5.638 -0.059 -5.638 -1.834 -2.625 1.749 -2.344 D 115 113 3 116 3 0 14 139 222 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 20 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 117 116 3 119 3 1 17 141 224 -5.638 -0.059 -5.638 -1.722 1.536 -1.472 -1.194 D 118 116 3 119 3 0 13 138 221 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 19 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - A - - - ML 120 119 3 122 3 1 17 140 223 -5.638 -0.059 -5.638 1.067 -1.347 0.017 -1.000 D 121 119 3 122 3 0 12 136 219 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 18 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - g - - - ML 123 122 3 125 3 1 16 138 221 -5.638 -0.059 -5.638 0.011 -0.757 0.845 -0.727 D 124 122 3 125 3 0 11 135 218 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 18 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - U - - - ML 126 125 3 128 3 1 15 137 220 -5.638 -0.059 -5.638 -1.184 0.089 -1.361 1.075 D 127 125 3 128 3 0 11 134 216 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 17 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 129 128 3 131 3 1 15 136 218 -5.638 -0.059 -5.638 -0.229 -0.983 -1.123 1.125 D 130 128 3 131 3 0 10 132 215 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 16 142 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - G - - - ML 132 131 3 134 3 1 14 134 217 -5.638 -0.059 -5.638 -0.710 -1.457 1.282 -0.756 D 133 131 3 134 3 0 9 131 213 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 16 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - - - ML 135 134 3 137 3 1 13 133 215 -5.638 -0.059 -5.638 1.739 -2.353 -2.092 -2.112 D 136 134 3 137 3 0 9 130 212 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 15 139 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - G - - - ML 138 137 3 140 3 1 13 132 214 -5.638 -0.059 -5.638 -0.883 -2.094 1.551 -1.771 D 139 137 3 140 3 0 8 128 210 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 14 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - G - - - ML 141 140 3 143 3 1 12 130 212 -5.638 -0.059 -5.638 -1.834 -2.625 1.749 -2.344 D 142 140 3 143 3 0 7 127 209 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 14 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - C - - - ML 144 143 3 146 3 1 11 129 211 -5.638 -0.059 -5.638 -1.637 1.494 -1.292 -1.139 D 145 143 3 146 3 0 7 126 207 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - G - - - ML 147 146 3 149 3 1 11 128 209 -5.638 -0.059 -5.638 -0.158 -1.684 1.261 -1.334 D 148 146 3 149 3 0 6 124 206 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 12 134 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - A - - - ML 150 149 3 152 3 1 10 126 208 -5.638 -0.059 -5.638 1.124 -0.357 -1.120 -0.788 D 151 149 3 152 3 0 6 123 204 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 11 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - G - - - ML 153 152 3 155 3 1 9 125 206 -5.638 -0.059 -5.638 -0.620 -1.946 1.466 -1.612 D 154 152 3 155 3 0 5 122 203 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 11 131 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - C - - - ML 156 155 3 158 3 1 8 123 205 -5.638 -0.059 -5.638 -1.310 1.531 -1.916 -1.179 D 157 155 3 158 3 0 4 120 201 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 10 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - C - - - ML 159 158 3 161 3 1 8 122 203 -5.638 -0.059 -5.638 -1.413 1.358 -0.836 -0.995 D 160 158 3 161 3 0 4 119 200 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 9 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - U - - - ML 162 161 3 164 3 1 7 121 202 -5.638 -0.126 -3.981 -1.173 0.169 -1.349 1.028 D 163 161 3 164 3 0 3 118 199 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 9 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - u - - - ML 165 164 3 167 3 1 7 119 200 -5.574 -0.062 -5.574 -0.474 -0.605 -0.268 0.841 D 166 164 3 167 3 0 3 117 198 -12.332 -0.709 -1.366 IL 167 167 3 167 3 1 8 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - G - - - ML 168 167 3 170 3 1 6 118 199 -5.638 -0.059 -5.638 -1.340 -1.937 1.556 -1.309 D 169 167 3 170 3 0 1 115 195 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 7 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - G - - - ML 171 170 3 173 3 1 5 117 197 -5.638 -0.059 -5.638 -0.652 -0.974 1.250 -1.070 D 172 170 3 173 3 0 1 113 194 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 7 123 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - G - - - ML 174 173 3 176 3 1 5 115 196 -5.638 -0.059 -5.638 -1.834 -2.625 1.749 -2.344 D 175 173 3 176 3 0 0 112 192 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 6 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - C - - - ML 177 176 3 179 3 1 4 114 194 -5.638 -0.059 -5.638 -2.054 1.667 -2.260 -1.412 D 178 176 3 179 3 0 0 111 191 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 6 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - U - - - ML 180 179 3 182 3 1 4 113 193 -5.638 -0.059 -5.638 -0.823 -0.613 -0.415 1.022 D 181 179 3 182 3 0 0 109 189 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 5 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - G - - - ML 183 182 3 185 3 1 3 111 191 -5.638 -0.059 -5.638 -1.195 -2.268 1.632 -1.960 D 184 182 3 185 3 0 0 108 187 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 4 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - C - - - ML 186 185 3 188 3 1 3 110 189 -5.638 -0.084 -4.784 -0.891 1.130 -1.352 -0.183 D 187 185 3 188 3 0 0 107 186 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 4 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - U - - - ML 189 188 3 191 3 1 2 108 188 -5.615 -0.060 -5.615 -1.172 -1.096 -0.788 1.327 D 190 188 3 191 3 0 0 105 185 -11.895 -1.075 -0.929 IL 191 191 3 191 3 1 4 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - U - - - ML 192 191 3 194 3 1 2 107 186 -5.638 -0.059 -5.638 -1.795 -1.446 -1.961 1.627 D 193 191 3 194 3 0 0 104 183 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 3 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - U - - - ML 195 194 3 197 3 1 2 105 185 -5.638 -0.059 -5.638 -1.253 -0.229 -1.432 1.237 D 196 194 3 197 3 0 0 102 181 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 3 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - A - - - ML 198 197 3 200 3 1 1 104 183 -5.638 -0.059 -5.638 1.469 -1.711 -0.867 -1.402 D 199 197 3 200 3 0 0 101 179 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 3 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - G - - - ML 201 200 3 203 3 1 1 103 181 -5.638 -0.059 -5.638 -0.784 -1.379 1.397 -1.316 D 202 200 3 203 3 0 0 99 178 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 2 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - A - - - ML 204 203 3 206 3 1 1 101 180 -5.638 -0.059 -5.638 1.534 -1.821 -1.080 -1.525 D 205 203 3 206 3 0 0 98 176 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 2 108 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 71 - G - - - ML 207 206 3 209 3 1 1 100 178 -5.638 -0.059 -5.638 -1.136 -2.235 1.618 -1.924 D 208 206 3 209 3 0 0 96 174 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 72 - G - - - ML 210 209 3 212 3 1 1 98 176 -5.638 -0.059 -5.638 -0.901 -1.436 1.440 -1.390 D 211 209 3 212 3 0 0 95 173 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 73 - C - - - ML 213 212 3 215 3 1 1 97 175 -5.638 -0.059 -5.638 -1.451 1.562 -1.987 -1.223 D 214 212 3 215 3 0 0 93 171 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 74 - G - - - ML 216 215 3 218 3 1 1 95 173 -5.638 -0.059 -5.638 -1.139 -2.236 1.618 -1.926 D 217 215 3 218 3 0 0 92 169 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 75 - C - - - ML 219 218 3 221 3 1 1 94 171 -5.638 -0.059 -5.638 -1.480 1.403 -0.972 -1.039 D 220 218 3 221 3 0 0 90 167 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 101 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 76 - U - - - ML 222 221 3 224 3 1 1 92 170 -5.638 -0.111 -4.210 -1.795 -1.446 -1.961 1.627 D 223 221 3 224 3 0 0 89 165 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 77 - G - - - ML 225 224 3 227 3 1 1 91 168 -5.588 -0.061 -5.588 -1.095 -2.144 1.597 -1.833 D 226 224 3 227 3 0 0 86 163 -12.196 -2.230 -0.346 IL 227 227 3 227 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 78 - A - - - ML 228 227 3 230 3 1 1 90 166 -5.588 -0.061 -5.588 1.291 -0.756 -1.203 -0.924 D 229 227 3 230 3 0 0 85 161 -12.196 -2.230 -0.346 IL 230 230 3 230 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 79 - C - - - ML 231 230 3 233 3 1 1 88 164 -5.588 -0.061 -5.588 -1.713 1.519 -1.921 -0.822 D 232 230 3 233 3 0 0 83 159 -12.196 -2.230 -0.346 IL 233 233 3 233 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 80 - A - - - ML 234 233 3 236 3 1 1 86 163 -5.588 -0.061 -5.588 1.713 -2.228 -1.968 -1.983 D 235 233 3 236 3 0 0 82 158 -12.196 -2.230 -0.346 IL 236 236 3 236 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 81 - u - - - ML 237 236 3 239 3 1 1 85 161 -5.588 -0.061 -5.588 -0.354 -0.788 -0.234 0.838 D 238 236 3 239 3 0 0 81 156 -12.196 -2.230 -0.346 IL 239 239 3 239 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 80 ] 82 - C - - - ML 240 239 3 242 3 1 1 83 159 -5.588 -0.061 -5.588 -1.444 1.302 -1.639 -0.242 D 241 239 3 242 3 0 0 80 155 -12.196 -2.230 -0.346 IL 242 242 3 242 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 81 ] 83 - C - - - ML 243 242 3 245 3 1 1 82 157 -5.588 -0.061 -5.588 -1.596 1.437 -1.799 -0.569 D 244 242 3 245 3 0 0 79 154 -12.196 -0.802 -1.230 IL 245 245 3 245 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 82 ] 84 - G - - - ML 246 245 3 248 3 1 1 80 155 -5.638 -0.059 -5.638 -1.231 -2.288 1.640 -1.981 D 247 245 3 248 3 0 0 76 151 -11.551 -1.585 -0.585 IL 248 248 3 248 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 83 ] 85 - A - - - ML 249 248 3 251 3 1 1 78 153 -5.638 -0.059 -5.638 1.739 -2.353 -2.092 -2.112 D 250 248 3 251 3 0 0 75 149 -11.551 -1.585 -0.585 IL 251 251 3 251 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 84 ] 86 - G - - - ML 252 251 3 254 3 1 1 77 151 -5.638 -0.059 -5.638 -0.575 -1.921 1.449 -1.584 D 253 251 3 254 3 0 0 73 147 -11.551 -1.585 -0.585 IL 254 254 3 254 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 85 ] 87 - G - - - ML 255 254 3 257 3 1 1 75 149 -5.638 -0.059 -5.638 -1.834 -2.625 1.749 -2.344 D 256 254 3 257 3 0 0 71 145 -11.551 -1.585 -0.585 IL 257 257 3 257 3 1 1 83 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 86 ] 88 - A - - - ML 258 257 3 260 3 1 1 73 147 -5.638 -0.059 -5.638 1.426 -1.649 -0.745 -1.334 D 259 257 3 260 3 0 0 70 143 -11.551 -1.585 -0.585 IL 260 260 3 260 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 87 ] 89 - G - - - ML 261 260 3 263 3 1 1 72 145 -5.638 -0.091 -4.613 -1.304 -1.484 1.539 -1.591 D 262 260 3 263 3 0 0 68 141 -11.551 -1.585 -0.585 IL 263 263 3 263 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 88 ] 90 - c - - - ML 264 263 3 266 3 1 1 70 143 -5.608 -0.060 -5.608 0.006 0.389 -0.306 -0.188 D 265 263 3 266 3 0 0 66 138 -11.979 -2.013 -0.411 IL 266 266 3 266 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 89 ] 91 - C - - - ML 267 266 3 269 3 1 1 68 141 -5.608 -0.060 -5.608 -1.583 1.474 -1.255 -1.093 D 268 266 3 269 3 0 0 64 136 -11.979 -2.013 -0.411 IL 269 269 3 269 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 90 ] 92 - U - - - ML 270 269 3 272 3 1 1 66 139 -5.608 -0.060 -5.608 -1.417 -0.784 -1.595 1.440 D 271 269 3 272 3 0 0 63 135 -11.979 -0.988 -1.013 IL 272 272 3 272 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 91 ] 93 - U - - - ML 273 272 3 275 3 1 1 64 137 -5.638 -0.059 -5.638 -0.662 -0.524 -0.781 1.064 D 274 272 3 275 3 0 0 60 132 -11.551 -1.585 -0.585 IL 275 275 3 275 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 92 ] 94 - C - - - ML 276 275 3 278 3 1 1 62 134 -5.638 -0.059 -5.638 -1.553 1.362 -1.755 -0.335 D 277 275 3 278 3 0 0 58 129 -11.551 -1.585 -0.585 IL 278 278 3 278 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 93 ] 95 - U - - - ML 279 278 3 281 3 1 1 60 132 -5.638 -0.059 -5.638 -1.263 -0.264 -1.442 1.252 D 280 278 3 281 3 0 0 55 126 -11.551 -1.585 -0.585 IL 281 281 3 281 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 94 ] 96 - C - - - ML 282 281 3 284 3 1 1 58 129 -5.638 -0.059 -5.638 -1.792 1.540 -2.007 -0.851 D 283 281 3 284 3 0 0 53 123 -11.551 -1.585 -0.585 IL 284 284 3 284 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 95 ] 97 - C - - - ML 285 284 3 287 3 1 1 55 126 -5.638 -0.059 -5.638 -2.054 1.667 -2.260 -1.412 D 286 284 3 287 3 0 0 49 119 -11.551 -1.585 -0.585 IL 287 287 3 287 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 96 ] 98 - U - - - ML 288 287 3 290 3 1 1 52 122 -5.638 -0.059 -5.638 -0.648 -1.087 -1.333 1.319 D 289 287 3 290 3 0 0 45 114 -11.551 -1.585 -0.585 IL 290 290 3 290 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 97 ] 99 - G - - - ML 291 290 3 293 3 1 1 48 118 -5.638 -0.059 -5.638 -0.881 -2.093 1.551 -1.770 D 292 290 3 293 3 0 0 32 101 -11.551 -1.585 -0.585 IL 293 293 3 293 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 98 ] 100 - G - - - ML 294 293 3 296 2 1 1 1 1 * 0.000 -1.834 -2.625 1.749 -2.344 D 295 293 3 296 2 0 0 0 0 * 0.000 IL 296 296 3 296 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 99 ] - - - - - - E 297 296 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HOXA11-AS1_3 ACC RF02139 DESC HOXA11 antisense RNA 1 conserved region 3 LENG 98 MAXL 189 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 06:02:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02139/CM NSEQ 24 EFFN 2.780273 CKSUM 2782322208 STATS LOCAL MSV -8.8967 0.71830 STATS LOCAL VITERBI -10.2519 0.71830 STATS LOCAL FORWARD -3.2862 0.71830 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57944 1.39647 1.12081 1.51220 1.38629 1.38629 1.38629 1.38629 0.02429 5.03237 4.04720 0.39730 1.11515 0.00000 * 1 1.78327 1.27882 1.80429 0.94429 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 2 2.32247 2.74005 0.30329 2.31246 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 3 2.49189 0.41670 2.63359 1.68088 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 4 2.47651 0.43002 2.61722 1.64785 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 5 1.97360 1.86134 1.67651 0.65671 - U - - : 1.38629 1.38629 1.38629 1.38629 0.06599 3.12863 3.90807 0.14950 1.97425 1.09861 0.40547 6 2.15169 2.92313 0.27025 2.70665 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 7 2.65759 3.20608 0.17422 3.01074 - G - - : 1.38629 1.38629 1.38629 1.38629 0.06009 3.90807 3.26375 1.46634 0.26236 1.09861 0.40547 8 2.30455 1.76596 2.42811 0.44477 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88974 3.88974 1.46634 0.26236 1.36218 0.29585 9 2.56785 0.32272 2.42851 2.19864 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88974 3.88974 1.46634 0.26236 1.36218 0.29585 10 2.59470 2.35892 2.70789 0.26901 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88974 3.88974 1.46634 0.26236 0.71786 0.66903 11 2.09179 1.86010 1.95913 0.54491 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 12 1.83638 0.76279 1.82961 1.54288 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 13 1.79941 1.83394 1.74752 0.69192 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 14 1.99695 2.83708 0.31150 2.61313 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 15 1.71396 2.19182 0.52657 2.14123 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 16 0.88193 1.66564 1.52039 1.72418 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 17 1.93020 2.79978 0.33166 2.57275 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 18 2.36568 0.44525 1.96603 2.07591 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 19 1.98125 1.36133 1.90768 0.78229 - u - - : 1.38629 1.38629 1.38629 1.38629 0.05886 3.90807 3.29462 1.46634 0.26236 1.09861 0.40547 20 2.63077 3.16820 0.18066 2.97237 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04171 3.89092 3.89092 1.46634 0.26236 1.34724 0.30105 21 0.44950 2.45177 1.78270 2.22816 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04171 3.89092 3.89092 1.46634 0.26236 1.34724 0.30105 22 1.66255 2.05487 0.63154 1.89404 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04171 3.89092 3.89092 1.46634 0.26236 0.73379 0.65409 23 2.65759 3.20608 0.17422 3.01073 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 24 0.76416 1.87652 1.53694 1.79508 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 25 1.58306 0.72743 1.90334 1.81748 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 26 1.98246 1.72533 1.79638 0.65728 - U - - : 1.38629 1.38629 1.38629 1.38629 0.08710 3.90807 2.75931 1.46634 0.26236 1.09861 0.40547 27 2.42003 0.44336 2.55654 1.65217 - C - - : 1.38629 1.38629 1.38629 1.38629 0.07757 3.86385 2.92521 1.46634 0.26236 0.49107 0.94668 28 1.84228 2.02497 0.53403 2.09308 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04234 3.87632 3.87632 1.46634 0.26236 0.57791 0.82341 29 2.65759 3.20608 0.17422 3.01073 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 30 2.17344 2.93520 0.26500 2.71979 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 31 0.55765 2.36822 1.53531 2.13358 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 32 0.43796 2.00710 2.30776 2.11374 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 33 0.49588 2.41768 1.66225 2.18815 - A - - : 1.38629 1.38629 1.38629 1.38629 0.06383 3.17589 3.90807 0.16169 1.90181 1.09861 0.40547 34 2.03620 0.55068 2.37228 1.61117 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 35 2.45493 0.38745 2.14617 2.13354 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 36 1.11424 1.66119 1.18917 1.72908 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 37 1.45119 1.77949 1.60922 0.92397 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 38 2.65759 3.20608 0.17422 3.01073 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 39 2.57996 0.32184 2.40663 2.21375 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 40 0.64680 2.31972 1.37430 2.07972 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 41 1.37888 1.91095 0.80046 1.88996 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 42 2.20713 1.32449 2.32934 0.64115 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 43 1.54498 2.06752 2.16442 0.60630 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 44 1.87814 2.39600 0.49759 1.91022 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 45 0.18084 3.01700 2.83620 2.85013 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 46 1.99802 2.83768 0.31118 2.61378 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 47 2.65759 3.20608 0.17422 3.01073 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 48 2.52090 0.35098 2.28173 2.17591 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 49 1.49591 2.55330 0.51252 2.31114 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 50 0.60698 1.63361 2.16275 1.93260 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 51 1.81593 2.73548 0.37011 2.50357 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 52 2.29415 0.32511 2.71408 2.20329 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 53 2.36568 0.44525 1.96603 2.07591 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 54 2.19940 1.26922 2.32142 0.67345 - U - - : 1.38629 1.38629 1.38629 1.38629 0.08710 3.90807 2.75931 1.46634 0.26236 1.09861 0.40547 55 1.71500 1.80537 1.57182 0.80306 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04288 3.86385 3.86385 1.46634 0.26236 0.49107 0.94668 56 2.31509 2.72876 0.30779 2.29390 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 57 1.83815 2.06168 0.51996 2.12775 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 58 2.65759 3.20608 0.17422 3.01073 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 59 2.80985 0.23110 2.95261 2.36527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 60 1.95680 1.81120 1.67373 0.67789 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 61 2.21486 2.95821 0.25533 2.74480 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 62 2.00399 0.60333 2.32339 1.51286 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05803 3.90807 3.31604 1.46634 0.26236 1.09861 0.40547 63 2.19835 2.14607 1.93261 0.46633 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04168 3.89172 3.89172 1.46634 0.26236 0.74498 0.64387 64 2.63058 2.38858 2.74536 0.25880 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 65 2.25512 1.54475 2.37867 0.52916 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 66 0.36816 2.57198 1.98757 2.35830 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 67 1.92977 2.34235 0.41811 2.29832 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 68 0.32276 2.64872 2.13521 2.44312 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 69 2.17344 2.93520 0.26500 2.71979 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 70 2.01056 2.38161 0.38816 2.34985 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 71 2.39225 0.30327 2.76336 2.23402 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 72 2.17568 2.93645 0.26447 2.72114 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 73 2.41247 0.41357 2.06028 2.10617 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 74 2.63058 2.38858 2.74536 0.25880 - U - - : 1.38629 1.38629 1.38629 1.38629 0.07699 3.90807 2.91829 1.46634 0.26236 1.09861 0.40547 75 2.14546 2.87250 0.27938 2.65673 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87353 3.87353 1.46634 0.26236 1.54557 0.23977 76 0.49162 1.91039 2.22008 2.02689 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87353 3.87353 1.46634 0.26236 1.54557 0.23977 77 2.57375 0.33368 2.71783 1.95579 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87353 3.87353 1.46634 0.26236 1.54557 0.23977 78 0.19908 2.93042 2.75043 2.76076 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87353 3.87353 1.46634 0.26236 1.54557 0.23977 79 1.63182 1.93234 1.54840 0.80513 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87353 3.87353 1.46634 0.26236 1.54557 0.23977 80 2.38733 0.48390 2.52204 1.55375 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87353 3.87353 1.46634 0.26236 1.54557 0.23977 81 2.49249 0.39011 2.63335 1.78095 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87353 3.87353 1.46634 0.26236 0.55579 0.85242 82 2.23965 2.97198 0.24975 2.75976 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 83 0.18084 3.01700 2.83620 2.85013 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 84 1.78457 2.71772 0.38163 2.48458 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 85 2.65759 3.20608 0.17422 3.01073 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 86 0.39762 2.52909 1.90256 2.31096 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 87 2.29023 2.41481 0.31967 2.48910 - G - - : 1.38629 1.38629 1.38629 1.38629 0.06289 3.90807 3.19727 1.46634 0.26236 1.09861 0.40547 88 1.38199 1.11686 1.59836 1.51691 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04188 3.88706 3.88706 1.46634 0.26236 1.39516 0.28474 89 2.48360 0.36440 2.25647 2.14368 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04188 3.88706 3.88706 1.46634 0.26236 1.39516 0.28474 90 2.36815 1.92995 2.49157 0.38800 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04188 3.88706 3.88706 1.46634 0.26236 0.68436 0.70201 91 1.84493 1.74983 1.92761 0.64882 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 92 2.46292 0.44227 2.60275 1.61863 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 93 2.26191 1.56903 2.38564 0.51823 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 94 2.62875 0.31882 2.77753 1.97592 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 95 2.80985 0.23110 2.95261 2.36527 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 96 1.83573 2.13964 2.31031 0.47228 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 97 1.99695 2.83708 0.31150 2.61313 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04099 3.90807 3.90807 1.46634 0.26236 1.09861 0.40547 98 2.65759 3.20608 0.17422 3.01073 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99936 0.00000 * //