INFERNAL1/a [1.1.5 | Sep 2023] NAME HTT-AS1_3 ACC RF02136 DESC HTT antisense RNA 1 conserved region 3 STATES 184 NODES 62 CLEN 60 W 138 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 06:31:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02136/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 3.714844 CKSUM 1146712932 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 71.50 NC 68.10 EFP7GF -10.0246 0.71892 ECMLC 0.65101 -10.06316 -0.13266 1600000 770605 0.001557 ECMGC 0.32779 -23.16261 -3.59044 1600000 244507 0.001636 ECMLI 0.52708 -10.64027 0.96489 1600000 544149 0.002205 ECMGI 0.36782 -14.55775 1.52588 1600000 148347 0.002696 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 138 220 -7.540 -7.747 -0.035 -6.161 IL 1 1 2 1 4 1 19 140 222 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 140 222 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 18 138 220 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 4 2 3 5 3 0 14 135 217 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 20 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 18 137 219 -5.886 -0.050 -5.886 -1.361 1.116 -0.060 -1.048 D 7 5 3 8 3 0 13 134 215 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 19 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 17 135 217 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 10 8 3 11 3 0 12 132 214 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 19 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 16 134 216 -5.886 -0.050 -5.886 -1.633 1.135 -1.834 0.264 D 13 11 3 14 3 0 11 131 212 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 18 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 16 133 214 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 16 14 3 17 3 0 11 130 211 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 17 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 15 132 213 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 19 17 3 20 3 0 10 128 209 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 16 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 14 130 211 -5.886 -0.050 -5.886 -1.482 0.200 -1.671 1.124 D 22 20 3 23 3 0 9 127 208 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 16 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 13 129 210 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 25 23 3 26 3 0 9 126 207 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 15 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 13 128 209 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 28 26 3 29 3 0 8 124 205 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 14 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 12 126 207 -5.886 -0.050 -5.886 1.838 -2.998 -2.709 -2.779 D 31 29 3 32 3 0 7 123 204 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 14 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 11 125 206 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 34 32 3 35 3 0 6 122 202 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 13 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 11 124 204 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 37 35 3 38 3 0 6 120 201 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 12 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 10 122 203 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 40 38 3 41 3 0 5 119 199 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 12 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 9 121 201 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 43 41 3 44 3 0 4 118 198 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 11 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 9 120 200 -5.886 -0.050 -5.886 -1.693 1.222 -1.899 0.124 D 46 44 3 47 3 0 4 116 196 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 10 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 8 118 198 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 49 47 3 50 3 0 3 115 195 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 10 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 7 117 197 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 52 50 3 53 3 0 2 114 193 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 9 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 7 116 195 -5.886 -0.050 -5.886 -1.182 -1.521 1.199 -0.128 D 55 53 3 56 3 0 2 112 192 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 8 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 6 114 194 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 58 56 3 59 3 0 1 111 190 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 8 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 6 113 192 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 61 59 3 62 3 0 1 110 189 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 7 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 5 112 191 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 64 62 3 65 3 0 0 108 187 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 7 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 5 110 189 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 67 65 3 68 3 0 0 107 186 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 6 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 4 109 188 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 70 68 3 71 3 0 0 106 184 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 5 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 4 107 186 -5.886 -0.050 -5.886 -1.215 -0.058 1.111 -1.156 D 73 71 3 74 3 0 0 104 183 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 5 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 3 106 185 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 76 74 3 77 3 0 0 103 181 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 4 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 3 105 183 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 79 77 3 80 3 0 0 101 179 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 4 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 81 80 3 83 3 1 2 103 181 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 82 80 3 83 3 0 0 100 178 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 3 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 2 102 180 -5.886 -0.050 -5.886 -0.185 -2.047 1.362 -1.698 D 85 83 3 86 3 0 0 99 176 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 3 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 87 86 3 89 3 1 2 101 178 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 88 86 3 89 3 0 0 97 175 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 90 89 3 92 3 1 1 99 177 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 91 89 3 92 3 0 0 96 173 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 2 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 93 92 3 95 3 1 1 98 175 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 94 92 3 95 3 0 0 94 171 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 96 95 3 98 3 1 1 96 174 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 97 95 3 98 3 0 0 93 170 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 2 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - G - - - ML 99 98 3 101 3 1 1 95 172 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 100 98 3 101 3 0 0 92 168 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 102 101 3 104 3 1 1 93 170 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 103 101 3 104 3 0 0 90 167 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 105 104 3 107 3 1 1 92 169 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 106 104 3 107 3 0 0 89 165 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - C - - - ML 108 107 3 110 3 1 1 91 167 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 109 107 3 110 3 0 0 87 163 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 1 89 165 -5.886 -0.050 -5.886 -0.038 -1.961 1.288 -1.610 D 112 110 3 113 3 0 0 86 162 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - - - ML 114 113 3 116 3 1 1 88 164 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 115 113 3 116 3 0 0 84 160 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 1 86 162 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 118 116 3 119 3 0 0 83 158 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 120 119 3 122 3 1 1 85 160 -5.886 -0.050 -5.886 -1.207 -1.573 1.247 -0.223 D 121 119 3 122 3 0 0 81 156 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - - - ML 123 122 3 125 3 1 1 83 158 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 124 122 3 125 3 0 0 80 155 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - G - - - ML 126 125 3 128 3 1 1 82 157 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 127 125 3 128 3 0 0 78 153 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - C - - - ML 129 128 3 131 3 1 1 80 155 -5.886 -0.050 -5.886 -1.633 1.135 -1.834 0.264 D 130 128 3 131 3 0 0 77 151 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 132 131 3 134 3 1 1 79 153 -5.886 -0.050 -5.886 -2.303 -1.865 -2.486 1.742 D 133 131 3 134 3 0 0 75 149 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 135 134 3 137 3 1 1 77 151 -5.886 -0.050 -5.886 -1.215 -0.058 1.111 -1.156 D 136 134 3 137 3 0 0 73 147 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - U - - - ML 138 137 3 140 3 1 1 75 149 -5.886 -0.050 -5.886 -1.482 0.200 -1.671 1.124 D 139 137 3 140 3 0 0 72 145 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - C - - - ML 141 140 3 143 3 1 1 74 148 -5.886 -0.050 -5.886 -2.568 1.770 -2.800 -1.851 D 142 140 3 143 3 0 0 70 143 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - a - - - ML 144 143 3 146 3 1 1 72 146 -5.886 -0.050 -5.886 0.965 -1.163 -1.211 0.226 D 145 143 3 146 3 0 0 68 141 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - G - - - ML 147 146 3 149 3 1 1 70 144 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 148 146 3 149 3 0 0 67 139 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - c - - - ML 150 149 3 152 3 1 1 69 142 -5.886 -0.050 -5.886 0.566 0.669 -1.339 -0.906 D 151 149 3 152 3 0 0 65 137 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 153 152 3 155 3 1 1 67 140 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 154 152 3 155 3 0 0 63 135 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 65 137 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 157 155 3 158 3 0 0 61 133 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - C - - - ML 159 158 3 161 3 1 1 63 135 -5.886 -0.050 -5.886 -1.633 1.135 -1.834 0.264 D 160 158 3 161 3 0 0 59 130 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - C - - - ML 162 161 3 164 3 1 1 61 133 -5.886 -0.050 -5.886 -1.693 1.222 -1.899 0.124 D 163 161 3 164 3 0 0 57 128 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 165 164 3 167 3 1 1 59 130 -5.886 -0.050 -5.886 -1.077 -1.169 0.104 1.004 D 166 164 3 167 3 0 0 54 125 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 70 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 168 167 3 170 3 1 1 57 128 -5.886 -0.050 -5.886 -1.482 0.200 -1.671 1.124 D 169 167 3 170 3 0 0 52 122 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - G - - - ML 171 170 3 173 3 1 1 55 125 -5.886 -0.050 -5.886 -2.216 -3.161 1.823 -2.886 D 172 170 3 173 3 0 0 48 118 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 174 173 3 176 3 1 1 52 121 -5.886 -0.050 -5.886 -1.260 -0.335 1.249 -1.279 D 175 173 3 176 3 0 0 44 113 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - U - - - ML 177 176 3 179 3 1 1 48 117 -5.886 -0.050 -5.886 -1.482 0.200 -1.671 1.124 D 178 176 3 179 3 0 0 32 101 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - G - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -0.038 -1.961 1.288 -1.610 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HTT-AS1_3 ACC RF02136 DESC HTT antisense RNA 1 conserved region 3 LENG 60 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sun Jul 7 06:31:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02136/CM NSEQ 4 EFFN 3.714844 CKSUM 1146712932 STATS LOCAL MSV -8.8432 0.71892 STATS LOCAL VITERBI -8.6178 0.71892 STATS LOCAL FORWARD -3.9688 0.71892 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 2.20206 1.12376 1.10935 1.44990 1.38629 1.38629 1.38629 1.38629 0.01997 5.22611 4.24093 0.39730 1.11515 0.00000 * 1 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 2 2.32973 0.61268 1.42756 2.11290 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 3 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 4 2.51822 0.59965 2.65766 1.20303 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 5 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 6 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 7 2.41319 1.24777 2.54460 0.60730 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 8 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 9 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 10 0.11199 3.46414 3.26417 3.31259 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 11 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 12 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 13 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 14 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 15 2.55986 0.53908 2.70235 1.30066 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 16 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 17 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 18 2.20562 2.44049 0.55535 1.47477 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 19 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 20 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 21 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 22 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 23 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 24 2.22842 1.42668 0.61617 2.18756 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 25 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 26 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 27 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 28 1.51420 2.80485 0.44248 2.56315 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 29 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 30 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 31 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 32 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 33 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 34 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 35 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 36 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 37 1.41244 2.74581 0.49373 2.50210 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 38 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 39 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 40 2.22308 2.47644 0.52185 1.54055 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 41 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 42 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 43 2.51822 0.59965 2.65766 1.20303 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 44 2.98243 2.67900 3.10963 0.17903 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 45 2.22842 1.42668 0.61617 2.18756 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 46 2.41319 1.24777 2.54460 0.60730 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 47 3.16636 0.15941 3.32743 2.66920 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 48 0.71744 2.19232 2.22558 1.22985 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 49 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 50 0.99373 0.92244 2.31451 2.01407 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 51 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 52 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 53 2.51822 0.59965 2.65766 1.20303 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 54 2.55986 0.53908 2.70235 1.30066 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 55 2.13316 2.19625 1.31390 0.69005 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 56 2.41319 1.24777 2.54460 0.60730 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 57 2.92203 3.57735 0.12285 3.38642 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 58 2.25938 1.61849 0.52031 2.27252 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 59 2.41319 1.24777 2.54460 0.60730 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03440 4.08005 4.08005 1.46634 0.26236 1.09861 0.40547 60 1.41244 2.74581 0.49373 2.50210 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //