# STOCKHOLM 1.0
#=GF ID GNAS-AS1_5
#=GF AC RF02131
#=GF DE GNAS antisense RNA 1 conserved region 5
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 70.0
#=GF NC 61.1
#=GF TC 72.6
#=GF SE Predicted; MAFFT; Eberhardt R
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 40.12 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 10749992
#=GF RT An imprinted antisense transcript at the human GNAS1 locus.
#=GF RA Hayward BE, Bonthron DT
#=GF RL Hum Mol Genet. 2000;9:835-841.
#=GF WK GNAS-AS1
#=GF SQ 22

AJ251760.1/11527-11647       UGA--CCCCACGGCGCUAGCGGUCCUCGUGGUCUUCCAGGCCUAGCCGCCAUACACC-----CGCCCC----CCAC-CGGCUUCC-AACCACCCCAGC-AGC---ACCUCUUCGGGCGUUCCAAC-GCGGCGCCCCCUA
AL132655.13/117403-117523    UGA--CCCCACGGCGCUAGCGGUCCUCGUGGUCUUCCAGGCCUAGCCGCCAUACACC-----CGCCCC----CCAC-CGGCUUCC-AACCACCCCAGC-AGC---ACCUCUUCGGGCGUUCCAAC-GCGGCGCCCCCUA
AJ251759.1/121-1             UGA--CCCCACGGCGCUAGCGGUCCUCGUGGUCUUCCAGGCCUAGCCGCCAUACACC-----CGCCCC----CCAC-CGGCUUCC-AACCACCCCAGC-AGC---ACCUCUUCGGGCGUUCCAAC-GCGGCGCCCCCUA
ABRT010063644.1/543-666      UGA--CCCCACGGCGCUAGCAGUCCGCGUGGCCUUCCAGGCCUAGCCGCCAUACGCC-----CGCCCA----CCAG-CGGCCUCC-AACCACCGGAGC-AGCACAACCUCUUUGGGCGUUCCAAC-GCGGCGCCCCCUA
AAQQ01179622.1/7254-7377     UGA--CCCCACGGCGCUAGCUAUCCUCGUGGCCUUCCAGGCCUGGCCGCUGUACGCC-----CGCCCA----CCAA-CCGCUUUC-AACCACCCCAAC-AGCACAACCUCUUUGGGCGUUCCAAC-GCGGCGCCCCCUA
AACN010211161.1/432-309      UGA--CCCCACGGCGCCAGUGAGCCUCGUGGCGUCCCAGGCCUGGCCGCCAUACGCA-----CGCCCA----CCAA-CCGCUUCC-AACCACCCCAGC-AGCACAACCUCUUGGGGCGUUCCAAC-GCGGCGCCCCCUA
ABRO01055397.1/467-589       UGA--UCUCCCGGCGCCAUCGGUCCUCUUGGCCUCCUAGGCCUGGCCGCCAUACGUC-----GGCCCG----CCAA-CUGCUUCC-AACCACCCAAGC-AACCCAACCU-UUUGGGCGUUCCAAC-GCGGCGCCCCCUA
AAGV020495918.1/4878-5002    UGA--CCCCACGGCGCUAGCCGGCCUGGUGGCCUCUCAGGCCUGGCCGCCAUACACC-----CACCCA----CCAA-CGGCCACCAAACCACCCCGGC-GGCACAAUCUCUUCGGGUGUUCCAAC-GCGGCGCCCCCUA
ABDC01114725.1/2296-2410     UGA--CCUCAGGGCGCCAUCGGUCCUCGUGGCC---------UAGUCGCCAUACACG-----CGCCCC----CCAA-GGCCUUAA-AAUCACCCCCGC-AGCAUAACCUCUUAGGGCGUUCCAAC-GCGGCGCCCCCUA
AAKN02054782.1/94486-94609   UGA--ACCCUCAGCGCCAGCGGUCCUCGUGGUCCUCUCGGCCUGGCCGCCAUGCACU-----CACACA----CCAA-CAUUUCCU-AAGCACCCGAAC-UGCAUAACCCCUUUGGGCGUUCCAAC-GCGGCGCCCCCUA
AAFC03013468.1/5872-5749     UGA--CCCCACAGCGCCAGCCGGCCUCGUGGCAGCCCAGGCCUGGCCGCCAUACGCC-----CGCCCA----CCAA-CCGCUCUU-AACCACCCCAGC-GGCACAACCUCUUAGGGCGUUCCAAC-GCGGCGCCCCCUA
AANN01579945.1/4586-4465     UGA-CCCCCAUGGCGCCUACUGGCCUCGUGGUGUUCCAGGCCUAGUCGCCAUACUCC-----CGCCCA----C----CGCCUUCC-UUCUACUCCAGC-AGCACAAUCUCUUCGGUAGUUCUAAC-GCGGCGCCCCCUA
AAPY01645884.1/4157-4277     UGA--CCCCACGGCGC--GCGGUCCUCGUGGCUUGCCGGGCCUGACCACCAUACAC------CGCCAU----CCAA-CCGCAUCC-AACCAACCCAGC-GGCACAACCUCUUCGGGUGUUCCAAC-GCGGCGCCCCCUA
AAWR02038939.1/36791-36915   UGA-CCCCCACGGCACCAGCCAGCCUCGUGGCGUCCCAGGCCUGGCCGCCAUACGCC-----CGCCCA----CCAA-CCGCUUCC-AACCACCCCAGC-AACACAAUCUCUUAGGGCUUUCCAAC-GCGGCGCCCCCUA
ABVD01612417.1/958-1081      UGA--CCCCACGGCGCUAGCCGGCCUCGUGGCCCCCCAGGCCUGG-CGCCAUACAUC-----CGGCCA----CCAA-CGGCUUCC-AACCUCCCCAAC-AGCACAACCUCUUUGGGGGUUCCAACGGCGGCGCCCCCUU
AL593857.10/151496-151620    GGC--CCCCAAGGCACUCACGGCGACCGUGGCCUUCUAGGCCUGGCCGCCAUACGCC-----CGCCCG----CCAA-CCGCUUCC-AACCAACCCAGCAAGCACAACCUCUUUGGGCGUUCCAAC-GCGGCGCCCCCUA
ABRN01244656.1/6199-6323     CGA--CCCCACGGCGCCACCCAGCCUCGUGGCGGUCCAGGCCUGGUCGCCAUACGCC-----CGCCCA----CCAAUCCGCUUCU-AACCACCCCGGC-CGCAUAACCUCUUAGGGCGUUCCAAC-GCGGCGCCCCCUA
CR956413.12/30400-30523      UGA--CCCCACGGCGCCCACCGGCCUCGUGGCAUCCCAGGCCUGGCCGCCAUACGCC-----CGCCCA----CCGA-CCGCUCCA-ACCCACCCCAGC-CUCACAACCUCUUAGGGCGUUCCAAC-GCGGCGCCCCCUA
ABRQ01176517.1/1082-1209     UGA--CCCCAAGGUGCCAGGCGGCCUCGUGGCUUCUCGGGUCUAGCCGCCAUGCACC-----CGCCCAACCACCAG-CGCCUGCC-UGCCACCCCAGC-AGGCCAACUUCUUGGGGCGUUCCAAC-GCGGCGCCCCCUG
AAIY01739346.1/747-641       UGU--CCCCAUGGGGCGAGCG-GCCUCGAGGUUUCUCAGGUCUGGCCGCCAUACCA-------GCCCG----CCAA-CAACAG----------------CGCACAACUUCUUGGGGCAUUCCAAC-GAGGCGCCCCCUA
AABR05108926.1/3003-3129     UGAUCCCCCAAGGAACUUACGGCGACCGUGGCCUUCUAGGCCUGACCGCCAUACGCC-----CGCCCG----CCAA-CUGCUUCC-AACCAACCCAGCAAGCACAACCUCUUUGGGCGUUCCAAC-GCGGCGCCCCCUU
AAQR03050726.1/105702-105831 UGA-CCCCCAUGGCGCUGGCGGUCCUCGUGGCCUUCUGGGCCUAGCCGCCAUACGCCCCCCACCCCCA----CCAA-CGGCUUCC-AACCACCCCUGC-AGUUUAACCUUUUUGGGCGUUCCAAC-GCGGCGCCCCCUA
#=GC SS_cons                 :::..::::::::::::::::::::::::::::::::::::::::::::::::::::.....::::::....::::.::::::::.::::::::::::.::::::::::::::::::::::::::.:::::::::::::
#=GC RF                      UGa..CCCCacGGcGCuagCgGuCCUCGUGGccuuCcaGGCCUGGCCGCCAUACgCc.....CGCCCa....CCAa.CggCuuCc.AaCCACCCcaGC.aGCacAACCUCUUuGGGcGUUCCAAC.GCGGCGCCCCCUa
//
