# STOCKHOLM 1.0
#=GF ID GNAS-AS1_2
#=GF AC RF02128
#=GF DE GNAS antisense RNA 1 conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 47.0
#=GF NC 46.2
#=GF TC 48.2
#=GF SE Predicted; WAR; Eberhardt R
#=GF SS Predicted; WAR;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.25 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 10749992
#=GF RT An imprinted antisense transcript at the human GNAS1 locus.
#=GF RA Hayward BE, Bonthron DT
#=GF RL Hum Mol Genet. 2000;9:835-841.
#=GF WK GNAS-AS1
#=GF SQ 16

AAFC03013468.1/13876-13759   CUUAAGGGGUCUUCCUUCCAGGUCUCCGCC-C-GGGGGAAGGCGUCACGCAGCCC-CAAAACUUA-GCUCUGGUGGGCUGCGG----CGCUG------ACUAAUAGCUCUUGGAUGCUGCCCUGAUCUUAC-C
AANG01240621.1/3195-3306     UUUUCUUGGUCCUCCUUCCAGGUCUCUUCU-C-UGGGAAAGGCGUCGUGGCGCGC-CAGAACUUA-GUUAUGCUG-GCUGCGG----CGC----------AAAUGGCUGCUGGACGCCUGUGU-GUCUUCA-C
AANU01258066.1/5608-5495     CUUAAAUGGUCUUCCUUCCAGGACCUAUUC-CGUAGGAAAGGCGUCGCGGCGC-C-CAAGACUUA-GUUCUGCUGGUCUGCAA----GGC----------AAACUGUGGUUAGAUGCCUUUGUGGUCUUCC-G
AAWR02038939.1/28583-28699   UUUAAAUGGUCUUCCUUCCAGGUGUCUUCC-C-UGAGAAAGGCGUCGCAGAGUCC-CAGAACUUA-GUUAUUUUGGGCUGCGG----CGCUG------ACGGAUGGCUGCUGGA-GCCGUUGUGGUGUUCC-C
ABDC01114723.1/477-574       AAUAAACGGUCUUCCUUCCCGGACCUAUUC-CGUAGGAAAGGCGCUACAGCGCCC-CAGAACUUA-GUUAUGCGA--CGGU-----------------------------UGGAUGCCUUUGUGGUCUUCG-G
ABRN01244655.1/803-920       GUUAAAGGGUCUUCCUUCCAGGUCUCUUCC-C-UGGGCAAGGCGUCGCGGAGCCC-CAGAACUU-----CUUCUGGGCUGCGGCGCUCGCUG------ACUAAUGGCUGUUGGAUGCUGUUCUGGUCUUCA-C
ABRT010063641.1/1433-1528    UUUCAGUGGUCAUCCUUCCAGGUCCGGUUC-C-UAGGAAAGGCGUUGCAGCACUC-CAGAACUUA-GUUCAGCGG--CUGU------------------------------GGUGGGAACAGUGGUCUUCA-G
ABVD01502572.1/1681-1790     UUAACACGGUCUUCCUUCCAGGACCGUUUA-CCUAGGAAAGGCG--ACGGAGCGU-CU---CCCA-CCUUAG-GG--CUGUGG----UGCUG------GCUAAUGAUAGUUG-AUGCCUU-AGGGUUUUCACC
AJ251759.1/526-413           CUUAAAUGGUCUUCCUUCCAGGACCUAUUC-CGUAGGAAAGGCGUCGCGGCGC-C-CAAGACUUA-GUUCUGCCGGGCUGCAG----CGC----------AGACUGUGGUUGGAUGCUUUUGUGGUCUUCC-C
AJ251760.1/3175-3288         CUUAAAUGGUCUUCCUUCCAGGACCUAUUC-CGUAGGAAAGGCGUCGCGGCGC-C-CAAGACUUA-GUUCUGCCGGGCUGCAG----CGC----------AGACUGUGGUUGGAUGCUUUUGUGGUCUUCC-C
AL132655.13/109053-109166    CUUAAAUGGUCUUCCUUCCAGGACCUAUUC-CGUAGGAAAGGCGUCGCGGCGC-C-CAAGACUUA-GUUCUGCCGGGCUGCAG----CGC----------AGACUGUGGUUGGAUGCUUUUGUGGUCUUCC-C
CR956413.12/22314-22428      GUUAAAGGGUCUUCCUUCCAGGUCA----G-C-UAGGAGAGGCGUGGCGGCGUCC-CGGAACUUAAGUUAUGCUGGGCUGCGG----CGCUG------ACUAACGACUGUUGGAUGCGGUUCUGGUGUUGG-C
ABRQ01520820.1/1888-1998     UUAAAAGGGGCUCUC--CCGGGACCCUUCC-C-U-GGGAAGGCGCGGCAGCGUCC-CCGAACUCG-GCGCUGUGGGGCCGCGG----CGC----------UUAGGGUGCGUGGAUGCCUCUCUGGUCCCCA-C
AAGV020495917.1/433-550      AAGGAUCAGUCUGCCUUGCUGCGCCCCUUC-CCUAGGAAAGGCGUCACCGCGUCCCCCCCACUUC-GUUAUCUUGGGCUGUGG----CGCC-------GGCUAAAGAUGCUGGAUGCCUG-CUGGUCUUCA-C
AAKN02054782.1/86242-86366   UGUCGAUGGUCCUCCUUGCAGGGCGUCUUCUCUUGGGAG--GAGUCGCAGCGUCC-CAGGACUUA-GUUCCGCUGCGUUGCGG---GCGCCGAUGGUGGUGAACCCUGAUCCGAGGCCGGUGUGGCCUUUA-G
AAEX03014051.1/130251-130363 UUGCCACGGUCUUCCUUCCAGG-UCUCCUC-CAUAGGAACCGCG--ACGGUGCCC-CCA-ACUUA-GUUCGCCGG--CUGCGG----CGCUG------ACUAACUACCGUUGGAUGCCUUUAAGGUCUUAA-C
#=GC SS_cons                 ::::::::::::::::::::::::::::::.::::::::::::::::::::::::.:::::::::.:::::::::::::::::....::::.......:::::::::::::::::::::::::::::::::.:
#=GC RF                      uuuaaauGGUCUUCCUUCCaGGuCcuuUUC.CgUaGGaAAGGCGUcGCgGcGccC.CagaACUUa.GUUcuGcuGGGCUGCGG....CGCu.......gcuaAugguuGuUGGAuGCcuuUgUGGUCUUca.C
//
