INFERNAL1/a [1.1.5 | Sep 2023] NAME GHRLOS ACC RF02126 DESC Ghrelin opposite strand RNA conserved region STATES 214 NODES 72 CLEN 70 W 151 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 04:41:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02126/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 16 EFFN 3.425781 CKSUM 594587792 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.20 NC 46.10 EFP7GF -9.1660 0.71873 ECMLC 0.70863 -10.01579 -0.52397 1600000 1000709 0.001199 ECMGC 0.39578 -20.75532 -6.74282 1600000 102465 0.003904 ECMLI 0.65502 -8.40823 0.75992 1600000 486695 0.002466 ECMGI 0.47131 -11.28111 -0.53261 1600000 63406 0.006309 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 234 -7.459 -7.666 -0.037 -6.080 IL 1 1 2 1 4 1 27 153 236 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 153 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 26 151 234 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 4 2 3 5 3 0 21 148 231 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 28 158 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 25 150 233 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 7 5 3 8 3 0 21 147 230 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 27 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 24 149 232 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 10 8 3 11 3 0 20 145 228 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 26 155 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 24 147 230 -5.814 -0.052 -5.814 1.814 -2.807 -2.531 -2.582 D 13 11 3 14 3 0 19 144 227 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 25 154 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 23 146 229 -5.814 -0.052 -5.814 -1.358 -1.173 1.505 -1.610 D 16 14 3 17 3 0 18 143 225 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 24 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 22 145 227 -5.814 -0.052 -5.814 1.404 -0.822 -1.529 -1.180 D 19 17 3 20 3 0 18 141 224 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 24 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 21 143 226 -5.814 -0.124 -3.953 -2.106 -3.008 1.804 -2.731 D 22 20 3 23 3 0 17 140 222 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 23 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 21 142 225 -5.745 -0.055 -5.745 -1.848 1.510 -2.070 -0.653 D 25 23 3 26 3 0 16 138 221 -12.460 -2.494 -0.282 IL 26 26 3 26 3 1 23 149 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - g - - - ML 27 26 3 29 3 1 20 141 223 -5.745 -0.055 -5.745 0.139 -1.139 0.799 -0.504 D 28 26 3 29 3 0 16 138 220 -12.460 -2.494 -0.282 IL 29 29 3 29 3 1 22 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 19 140 222 -5.745 -0.055 -5.745 -2.276 1.717 -2.494 -1.601 D 31 29 3 32 3 0 16 137 219 -12.460 -0.633 -1.494 IL 32 32 3 32 3 1 21 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 19 138 220 -5.814 -0.052 -5.814 -2.420 1.744 -2.645 -1.724 D 34 32 3 35 3 0 14 135 217 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 20 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 18 137 219 -5.814 -0.052 -5.814 -1.413 0.824 -1.602 0.608 D 37 35 3 38 3 0 13 134 215 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 20 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 17 136 217 -5.814 -0.052 -5.814 -1.760 1.384 -1.973 -0.251 D 40 38 3 41 3 0 12 132 214 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 19 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - a - - - ML 42 41 3 44 3 1 16 134 216 -5.814 -0.052 -5.814 0.887 -0.994 -0.214 -0.347 D 43 41 3 44 3 0 12 131 212 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 18 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 16 133 214 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 46 44 3 47 3 0 11 130 211 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 17 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 15 132 213 -5.814 -0.052 -5.814 -1.565 1.162 -1.765 0.177 D 49 47 3 50 3 0 10 128 209 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 17 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 14 130 211 -5.814 -0.052 -5.814 -1.606 -0.616 -1.802 1.450 D 52 50 3 53 3 0 9 127 208 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 16 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 14 129 210 -5.814 -0.052 -5.814 -1.494 1.040 -1.689 0.354 D 55 53 3 56 3 0 9 126 207 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 15 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 13 128 208 -5.814 -0.052 -5.814 -1.468 -0.196 -1.657 1.292 D 58 56 3 59 3 0 8 124 205 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 15 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - u - - - ML 60 59 3 62 3 1 12 126 207 -5.814 -0.052 -5.814 -0.919 0.373 -0.705 0.644 D 61 59 3 62 3 0 8 123 204 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 14 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 12 125 205 -5.814 -0.052 -5.814 -2.420 1.744 -2.645 -1.724 D 64 62 3 65 3 0 7 122 202 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 13 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 11 124 204 -5.814 -0.052 -5.814 -1.494 1.040 -1.688 0.355 D 67 65 3 68 3 0 6 121 201 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 13 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - a - - - ML 69 68 3 71 3 1 10 122 202 -3.796 -0.136 -5.814 0.584 -1.008 0.295 -0.364 D 70 68 3 71 3 0 6 119 199 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 11 122 203 -4.049 -0.090 -11.693 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 72 71 3 74 3 1 10 121 201 -5.814 -0.052 -5.814 -1.400 0.107 -1.586 1.145 D 73 71 3 74 3 0 5 118 198 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 11 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 75 74 3 77 3 1 9 120 200 -5.814 -0.052 -5.814 -1.476 -1.356 -1.010 1.461 D 76 74 3 77 3 0 4 117 196 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 11 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - U - - - ML 78 77 3 80 3 1 9 119 198 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 79 77 3 80 3 0 4 115 195 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 10 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 1 8 117 197 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 82 80 3 83 3 0 3 114 193 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 9 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 7 116 195 -5.814 -0.052 -5.814 -2.420 1.744 -2.645 -1.724 D 85 83 3 86 3 0 2 113 192 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 9 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - c - - - ML 87 86 3 89 3 1 7 114 194 -5.814 -0.052 -5.814 -0.937 0.679 -0.651 0.310 D 88 86 3 89 3 0 2 111 190 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 8 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - a - - - ML 90 89 3 92 3 1 6 113 192 -5.814 -0.052 -5.814 0.697 -0.282 -0.499 -0.236 D 91 89 3 92 3 0 1 110 189 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 8 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 93 92 3 95 3 1 6 112 191 -5.814 -0.052 -5.814 -0.891 -2.343 1.593 -2.017 D 94 92 3 95 3 0 1 108 187 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 7 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 96 95 3 98 3 1 5 110 189 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 97 95 3 98 3 0 0 107 186 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 6 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - c - - - ML 99 98 3 101 3 1 4 109 188 -5.814 -0.052 -5.814 -1.413 0.824 -1.602 0.608 D 100 98 3 101 3 0 0 106 184 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 6 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 102 101 3 104 3 1 4 108 186 -5.814 -0.052 -5.814 1.519 -1.933 -0.870 -1.621 D 103 101 3 104 3 0 0 104 183 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 5 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 105 104 3 107 3 1 4 106 185 -5.814 -0.052 -5.814 -1.002 -0.554 -0.678 1.134 D 106 104 3 107 3 0 0 103 181 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 5 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 108 107 3 110 3 1 3 105 183 -5.814 -0.052 -5.814 -1.405 0.078 -1.591 1.160 D 109 107 3 110 3 0 0 102 179 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 4 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - C - - - ML 111 110 3 113 3 1 3 103 181 -5.814 -0.052 -5.814 -2.420 1.744 -2.645 -1.724 D 112 110 3 113 3 0 0 100 178 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 4 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - c - - - ML 114 113 3 116 3 1 2 102 180 -2.204 -0.386 -5.814 -1.424 0.863 -1.613 0.567 D 115 113 3 116 3 0 0 99 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 102 180 -5.841 -0.026 -13.485 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - U - - - ML 117 116 3 119 3 1 2 101 179 -5.814 -0.052 -5.814 -0.503 -0.980 -0.591 1.087 D 118 116 3 119 3 0 0 98 175 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - - - ML 120 119 3 122 3 1 2 99 177 -3.791 -0.136 -5.814 -1.367 -1.943 1.516 -1.024 D 121 119 3 122 3 0 0 96 174 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 99 177 -4.056 -0.090 -11.700 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - - - ML 123 122 3 125 3 1 1 98 176 -5.814 -0.052 -5.814 1.532 -1.957 -0.914 -1.646 D 124 122 3 125 3 0 0 95 172 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - G - - - ML 126 125 3 128 3 1 1 97 174 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 127 125 3 128 3 0 0 93 171 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 2 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - A - - - ML 129 128 3 131 3 1 1 95 173 -5.814 -0.052 -5.814 1.814 -2.807 -2.531 -2.582 D 130 128 3 131 3 0 0 92 169 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - U - - - ML 132 131 3 134 3 1 1 94 171 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 133 131 3 134 3 0 0 91 167 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 2 102 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - G - - - ML 135 134 3 137 3 1 1 93 169 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 136 134 3 137 3 0 0 89 166 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - A - - - ML 138 137 3 140 3 1 1 91 168 -5.814 -0.052 -5.814 1.814 -2.807 -2.531 -2.582 D 139 137 3 140 3 0 0 88 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - U - - - ML 141 140 3 143 3 1 1 90 166 -5.814 -0.052 -5.814 -1.650 -0.727 -1.846 1.485 D 142 140 3 143 3 0 0 86 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - U - - - ML 144 143 3 146 3 1 1 88 164 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 145 143 3 146 3 0 0 85 160 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - U - - - ML 147 146 3 149 3 1 1 87 163 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 148 146 3 149 3 0 0 83 159 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 1 85 161 -5.814 -0.052 -5.814 1.414 -1.472 -1.526 -0.674 D 151 149 3 152 3 0 0 82 157 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - U - - - ML 153 152 3 155 3 1 1 84 159 -5.814 -0.052 -5.814 -1.475 -0.224 -1.665 1.304 D 154 152 3 155 3 0 0 80 155 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 92 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - U - - - ML 156 155 3 158 3 1 1 82 157 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 157 155 3 158 3 0 0 79 153 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - G - - - ML 159 158 3 161 3 1 1 81 156 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 160 158 3 161 3 0 0 77 152 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - G - - - ML 162 161 3 164 3 1 1 79 154 -5.814 -0.052 -5.814 -1.375 -1.958 1.523 -1.050 D 163 161 3 164 3 0 0 75 150 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - A - - - ML 165 164 3 167 3 1 1 77 152 -5.814 -0.052 -5.814 1.814 -2.807 -2.531 -2.582 D 166 164 3 167 3 0 0 74 148 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - G - - - ML 168 167 3 170 3 1 1 76 150 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 169 167 3 170 3 0 0 72 146 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - C - - - ML 171 170 3 173 3 1 1 74 148 -5.814 -0.052 -5.814 -2.420 1.744 -2.645 -1.724 D 172 170 3 173 3 0 0 70 144 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 83 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - U - - - ML 174 173 3 176 3 1 1 72 146 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 175 173 3 176 3 0 0 69 142 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - C - - - ML 177 176 3 179 3 1 1 71 144 -5.814 -0.136 -3.791 -0.943 1.490 -1.961 -1.272 D 178 176 3 179 3 0 0 67 140 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 63 - A - - - ML 180 179 3 182 3 1 1 69 142 -5.733 -0.055 -5.733 1.783 -2.596 -2.329 -2.364 D 181 179 3 182 3 0 0 65 138 -12.567 -2.601 -0.260 IL 182 182 3 182 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 64 - a - - - ML 183 182 3 185 3 1 1 67 140 -5.733 -0.055 -5.733 0.998 -1.417 0.202 -1.065 D 184 182 3 185 3 0 0 65 137 -12.567 -0.577 -1.601 IL 185 185 3 185 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 65 - A - - - ML 186 185 3 188 3 1 1 65 138 -5.814 -0.052 -5.814 1.814 -2.807 -2.531 -2.582 D 187 185 3 188 3 0 0 61 133 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 66 - G - - - ML 189 188 3 191 3 1 1 64 136 -5.814 -0.052 -5.814 -2.106 -3.008 1.804 -2.731 D 190 188 3 191 3 0 0 59 131 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 67 - C - - - ML 192 191 3 194 3 1 1 62 133 -5.814 -0.052 -5.814 -1.491 1.034 -1.685 0.362 D 193 191 3 194 3 0 0 57 128 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 68 - U - - - ML 195 194 3 197 3 1 1 60 131 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 196 194 3 197 3 0 0 55 125 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 69 - U - - - ML 198 197 3 200 3 1 1 57 128 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 199 197 3 200 3 0 0 52 122 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 70 - U - - - ML 201 200 3 203 3 1 1 55 125 -5.814 -0.052 -5.814 -2.152 -1.740 -2.331 1.712 D 202 200 3 203 3 0 0 49 118 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 71 - G - - - ML 204 203 3 206 3 1 1 52 122 -5.814 -0.052 -5.814 -0.959 -2.380 1.610 -2.057 D 205 203 3 206 3 0 0 44 113 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 72 - G - - - ML 207 206 3 209 3 1 1 48 117 -5.814 -0.052 -5.814 -0.246 -1.978 1.367 -1.630 D 208 206 3 209 3 0 0 32 101 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 73 - G - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -2.106 -3.008 1.804 -2.731 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 71 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME GHRLOS ACC RF02126 DESC Ghrelin opposite strand RNA conserved region LENG 70 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 9 04:41:31 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02126/CM NSEQ 16 EFFN 3.425781 CKSUM 594587792 STATS LOCAL MSV -8.8456 0.71873 STATS LOCAL VITERBI -9.1116 0.71873 STATS LOCAL FORWARD -3.4874 0.71873 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56207 1.48558 1.31769 1.21680 1.38629 1.38629 1.38629 1.38629 0.02113 5.17009 4.18492 0.39730 1.11515 0.00000 * 1 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 2 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 3 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 4 0.12866 3.33216 3.14047 3.17599 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 5 2.32733 2.19909 0.34298 2.50239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 6 0.41312 1.95582 2.44596 2.20433 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 7 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08595 4.02994 2.73979 1.46634 0.26236 1.09861 0.40547 8 2.66753 0.33961 2.82106 1.83892 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03801 3.98201 3.98201 1.46634 0.26236 1.72870 0.19542 9 1.29009 2.17571 0.83241 1.73598 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03801 3.98201 3.98201 1.46634 0.26236 1.72870 0.19542 10 2.96401 0.19648 3.11526 2.49613 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03801 3.98201 3.98201 1.46634 0.26236 0.43855 1.03556 11 3.06349 0.17720 3.21974 2.58098 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 12 2.36562 0.81480 2.49643 0.96495 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 13 2.60592 0.42704 2.75393 1.56042 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 14 0.77125 2.07548 1.53464 1.62691 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 15 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 16 2.47133 0.58089 2.60940 1.26391 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 17 2.49972 1.81354 2.63502 0.38112 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 18 2.42212 0.66509 2.55676 1.14104 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 19 2.40350 1.52196 2.53482 0.49096 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 20 2.02326 1.12787 1.87463 0.93996 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 21 3.06349 0.17720 3.21974 2.58098 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 22 2.42179 0.66574 2.55641 1.14018 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 23 0.98171 2.08505 1.18149 1.63883 - a - - : 1.38629 1.38629 1.38629 1.38629 0.09403 2.63151 4.02994 0.06235 2.80604 1.09861 0.40547 24 2.35646 1.31244 2.48568 0.59273 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 25 2.40954 2.32597 2.08667 0.37345 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 26 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 27 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 28 3.06349 0.17720 3.21974 2.58098 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 29 2.03597 0.91564 1.83746 1.17129 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 30 0.90337 1.58195 1.73225 1.54958 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 31 2.00400 3.01050 0.28212 2.78459 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 32 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 33 2.36562 0.81480 2.49643 0.96495 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 34 0.33342 2.72637 1.98935 2.50970 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 35 2.08080 1.77023 1.85654 0.60027 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 36 2.35997 1.33247 2.48934 0.58198 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 37 3.06349 0.17720 3.21974 2.58098 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 38 2.37322 0.78808 2.50455 0.99320 - c - - : 1.38629 1.38629 1.38629 1.38629 0.26756 1.52794 4.02994 0.01760 4.04891 1.09861 0.40547 39 1.73520 2.06586 1.79608 0.63304 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 40 2.33382 2.73326 0.33532 2.09591 - G - - : 1.38629 1.38629 1.38629 1.38629 0.09435 2.62748 4.02994 0.06203 2.81097 1.09861 0.40547 41 0.32421 2.74266 2.02010 2.52751 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 42 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 43 0.12866 3.33216 3.14047 3.17599 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 44 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 45 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 46 0.12866 3.33216 3.14047 3.17599 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 47 2.52974 1.89029 2.66601 0.35701 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 48 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 49 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 50 0.40585 2.40664 2.44389 1.85373 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 51 2.40900 1.54169 2.54057 0.48247 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 52 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 53 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 54 2.33937 2.74356 0.33051 2.11434 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 55 0.12866 3.33216 3.14047 3.17599 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 56 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 57 3.06349 0.17720 3.21974 2.58098 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 58 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 59 2.04021 0.35343 2.74560 2.26808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.09435 4.02994 2.62748 1.46634 0.26236 1.09861 0.40547 60 0.15044 3.18582 3.00074 3.02459 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03832 3.97392 3.97392 1.46634 0.26236 1.80257 0.18017 61 0.69436 2.36820 1.24659 2.12464 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03832 3.97392 3.97392 1.46634 0.26236 0.40011 1.10942 62 0.12866 3.33216 3.14047 3.17599 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 63 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 64 2.42001 0.66934 2.55450 1.13538 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 65 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 66 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 67 2.87769 2.59252 3.00170 0.19942 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 68 2.05092 3.03627 0.27009 2.81238 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 69 1.55665 2.75711 0.43863 2.51624 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03620 4.02994 4.02994 1.46634 0.26236 1.09861 0.40547 70 2.84591 3.47121 0.13562 3.27913 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //