INFERNAL1/a [1.1.4 | Dec 2020] NAME GHRLOS ACC RF02126 DESC Ghrelin opposite strand RNA conserved region STATES 214 NODES 72 CLEN 70 W 151 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:49:24 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 16 EFFN 3.449219 CKSUM 594587792 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.50 NC 40.20 EFP7GF -9.1667 0.71871 ECMLC 0.70376 -10.08858 -0.52973 1600000 1001699 0.001198 ECMGC 0.40182 -20.53663 -6.73004 1600000 102659 0.003896 ECMLI 0.65927 -8.35049 0.76587 1600000 489057 0.002454 ECMGI 0.46894 -11.35662 -0.55505 1600000 63372 0.006312 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 234 -7.466 -7.673 -0.037 -6.087 IL 1 1 2 1 4 1 27 153 236 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 153 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 26 151 234 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 4 2 3 5 3 0 21 148 231 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 28 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 25 150 233 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 7 5 3 8 3 0 21 147 230 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 27 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 24 148 231 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 10 8 3 11 3 0 20 145 228 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 26 155 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 24 147 230 -5.820 -0.052 -5.820 1.817 -2.823 -2.546 -2.598 D 13 11 3 14 3 0 19 144 227 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 25 154 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 23 146 229 -5.820 -0.052 -5.820 -1.340 -1.073 1.481 -1.566 D 16 14 3 17 3 0 19 143 225 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 24 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 22 145 227 -5.820 -0.052 -5.820 1.411 -0.836 -1.544 -1.194 D 19 17 3 20 3 0 18 141 224 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 24 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 21 143 226 -5.820 -0.123 -3.970 -2.115 -3.021 1.806 -2.744 D 22 20 3 23 3 0 17 140 222 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 23 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 21 142 224 -5.752 -0.055 -5.752 -1.869 1.519 -2.092 -0.677 D 25 23 3 26 3 0 16 138 221 -12.453 -2.487 -0.284 IL 26 26 3 26 3 1 23 149 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - g - - - ML 27 26 3 29 3 1 20 141 223 -5.752 -0.055 -5.752 0.186 -1.129 0.765 -0.503 D 28 26 3 29 3 0 16 138 220 -12.453 -2.487 -0.284 IL 29 29 3 29 3 1 22 147 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 19 139 222 -5.752 -0.055 -5.752 -2.291 1.720 -2.510 -1.614 D 31 29 3 32 3 0 16 137 219 -12.453 -0.637 -1.487 IL 32 32 3 32 3 1 21 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 19 138 220 -5.820 -0.052 -5.820 -2.432 1.747 -2.658 -1.734 D 34 32 3 35 3 0 14 135 217 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 20 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 18 137 219 -5.820 -0.052 -5.820 -1.429 0.857 -1.619 0.577 D 37 35 3 38 3 0 13 134 215 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 20 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 17 136 217 -5.820 -0.052 -5.820 -1.775 1.392 -1.990 -0.266 D 40 38 3 41 3 0 12 132 214 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 19 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - a - - - ML 42 41 3 44 3 1 17 134 216 -5.820 -0.052 -5.820 0.894 -0.998 -0.226 -0.348 D 43 41 3 44 3 0 12 131 212 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 18 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 16 133 214 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 46 44 3 47 3 0 11 130 211 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 17 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 15 132 213 -5.820 -0.052 -5.820 -1.546 1.121 -1.744 0.244 D 49 47 3 50 3 0 10 128 209 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 17 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 14 130 211 -5.820 -0.052 -5.820 -1.615 -0.617 -1.810 1.452 D 52 50 3 53 3 0 10 127 208 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 16 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 14 129 210 -5.820 -0.052 -5.820 -1.493 1.023 -1.687 0.381 D 55 53 3 56 3 0 9 126 206 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 15 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 13 128 208 -5.820 -0.052 -5.820 -1.465 -0.158 -1.655 1.278 D 58 56 3 59 3 0 8 124 205 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 15 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - u - - - ML 60 59 3 62 3 1 12 126 207 -5.820 -0.052 -5.820 -0.929 0.413 -0.716 0.617 D 61 59 3 62 3 0 8 123 204 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 14 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 12 125 205 -5.820 -0.052 -5.820 -2.432 1.747 -2.658 -1.734 D 64 62 3 65 3 0 7 122 202 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 13 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 11 124 204 -5.820 -0.052 -5.820 -1.495 1.028 -1.689 0.375 D 67 65 3 68 3 0 6 121 201 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 13 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - a - - - ML 69 68 3 71 3 1 10 122 202 -3.651 -0.148 -5.820 0.557 -0.999 0.297 -0.323 D 70 68 3 71 3 0 6 119 199 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 11 122 202 -4.232 -0.079 -11.876 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 72 71 3 74 3 1 10 121 201 -5.820 -0.052 -5.820 -1.397 0.173 -1.583 1.110 D 73 71 3 74 3 0 5 118 198 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 11 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 75 74 3 77 3 1 9 120 200 -5.820 -0.052 -5.820 -1.497 -1.370 -1.038 1.471 D 76 74 3 77 3 0 4 117 196 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 11 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - U - - - ML 78 77 3 80 3 1 9 118 198 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 79 77 3 80 3 0 4 115 195 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 10 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 1 8 117 197 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 82 80 3 83 3 0 3 114 193 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 9 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 7 116 195 -5.820 -0.052 -5.820 -2.432 1.747 -2.658 -1.734 D 85 83 3 86 3 0 3 113 192 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 9 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - c - - - ML 87 86 3 89 3 1 7 114 194 -5.820 -0.052 -5.820 -0.914 0.635 -0.598 0.329 D 88 86 3 89 3 0 2 111 190 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 8 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - a - - - ML 90 89 3 92 3 1 6 113 192 -5.820 -0.052 -5.820 0.668 -0.249 -0.506 -0.209 D 91 89 3 92 3 0 1 110 189 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 8 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 93 92 3 95 3 1 6 112 191 -5.820 -0.052 -5.820 -0.816 -2.310 1.574 -1.981 D 94 92 3 95 3 0 1 108 187 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 7 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 96 95 3 98 3 1 5 110 189 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 97 95 3 98 3 0 0 107 186 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 7 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - c - - - ML 99 98 3 101 3 1 5 109 188 -5.820 -0.052 -5.820 -1.429 0.857 -1.619 0.577 D 100 98 3 101 3 0 0 106 184 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 6 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 102 101 3 104 3 1 4 108 186 -5.820 -0.052 -5.820 1.531 -1.959 -0.903 -1.648 D 103 101 3 104 3 0 0 104 182 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 5 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 105 104 3 107 3 1 4 106 184 -5.820 -0.052 -5.820 -0.968 -0.503 -0.619 1.092 D 106 104 3 107 3 0 0 103 181 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 5 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 108 107 3 110 3 1 3 105 183 -5.820 -0.052 -5.820 -1.402 0.140 -1.589 1.129 D 109 107 3 110 3 0 0 101 179 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 4 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - C - - - ML 111 110 3 113 3 1 3 103 181 -5.820 -0.052 -5.820 -2.432 1.747 -2.658 -1.734 D 112 110 3 113 3 0 0 100 178 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 4 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - c - - - ML 114 113 3 116 3 1 2 102 180 -2.161 -0.398 -5.820 -1.420 0.825 -1.609 0.611 D 115 113 3 116 3 0 0 99 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 102 180 -5.894 -0.025 -13.538 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - U - - - ML 117 116 3 119 3 1 2 101 178 -5.820 -0.052 -5.820 -0.449 -0.960 -0.522 1.040 D 118 116 3 119 3 0 0 98 175 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - - - ML 120 119 3 122 3 1 2 99 177 -3.676 -0.145 -5.820 -1.350 -1.908 1.497 -0.949 D 121 119 3 122 3 0 0 96 174 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 99 177 -4.201 -0.081 -11.845 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - - - ML 123 122 3 125 3 1 1 98 176 -5.820 -0.052 -5.820 1.540 -1.975 -0.934 -1.666 D 124 122 3 125 3 0 0 95 172 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - G - - - ML 126 125 3 128 3 1 1 97 174 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 127 125 3 128 3 0 0 93 171 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 2 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - A - - - ML 129 128 3 131 3 1 1 95 173 -5.820 -0.052 -5.820 1.817 -2.823 -2.546 -2.598 D 130 128 3 131 3 0 0 92 169 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - U - - - ML 132 131 3 134 3 1 1 94 171 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 133 131 3 134 3 0 0 91 167 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 2 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - G - - - ML 135 134 3 137 3 1 1 92 169 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 136 134 3 137 3 0 0 89 166 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - A - - - ML 138 137 3 140 3 1 1 91 168 -5.820 -0.052 -5.820 1.817 -2.823 -2.546 -2.598 D 139 137 3 140 3 0 0 88 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - U - - - ML 141 140 3 143 3 1 1 90 166 -5.820 -0.052 -5.820 -1.666 -0.747 -1.863 1.493 D 142 140 3 143 3 0 0 86 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - U - - - ML 144 143 3 146 3 1 1 88 164 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 145 143 3 146 3 0 0 85 160 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - U - - - ML 147 146 3 149 3 1 1 87 163 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 148 146 3 149 3 0 0 83 159 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 1 85 161 -5.820 -0.052 -5.820 1.426 -1.493 -1.548 -0.701 D 151 149 3 152 3 0 0 82 157 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - U - - - ML 153 152 3 155 3 1 1 84 159 -5.820 -0.052 -5.820 -1.476 -0.198 -1.666 1.295 D 154 152 3 155 3 0 0 80 155 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - U - - - ML 156 155 3 158 3 1 1 82 157 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 157 155 3 158 3 0 0 78 153 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - G - - - ML 159 158 3 161 3 1 1 80 155 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 160 158 3 161 3 0 0 77 151 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - G - - - ML 162 161 3 164 3 1 1 79 154 -5.820 -0.052 -5.820 -1.380 -1.965 1.525 -1.051 D 163 161 3 164 3 0 0 75 150 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - A - - - ML 165 164 3 167 3 1 1 77 152 -5.820 -0.052 -5.820 1.817 -2.823 -2.546 -2.598 D 166 164 3 167 3 0 0 74 148 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - G - - - ML 168 167 3 170 3 1 1 76 150 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 169 167 3 170 3 0 0 72 146 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - C - - - ML 171 170 3 173 3 1 1 74 148 -5.820 -0.052 -5.820 -2.432 1.747 -2.658 -1.734 D 172 170 3 173 3 0 0 70 144 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 83 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - U - - - ML 174 173 3 176 3 1 1 72 146 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 175 173 3 176 3 0 0 69 142 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - C - - - ML 177 176 3 179 3 1 1 71 144 -5.820 -0.145 -3.676 -0.943 1.492 -1.969 -1.280 D 178 176 3 179 3 0 0 67 140 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 63 - A - - - ML 180 179 3 182 3 1 1 69 142 -5.730 -0.055 -5.730 1.782 -2.588 -2.321 -2.355 D 181 179 3 182 3 0 0 65 138 -12.648 -2.682 -0.245 IL 182 182 3 182 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 64 - a - - - ML 183 182 3 185 3 1 1 67 140 -5.730 -0.055 -5.730 0.966 -1.407 0.248 -1.055 D 184 182 3 185 3 0 0 65 137 -12.648 -0.539 -1.682 IL 185 185 3 185 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 65 - A - - - ML 186 185 3 188 3 1 1 65 138 -5.820 -0.052 -5.820 1.817 -2.823 -2.546 -2.598 D 187 185 3 188 3 0 0 61 133 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 66 - G - - - ML 189 188 3 191 3 1 1 64 136 -5.820 -0.052 -5.820 -2.115 -3.021 1.806 -2.744 D 190 188 3 191 3 0 0 59 131 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 67 - c - - - ML 192 191 3 194 3 1 1 62 133 -5.820 -0.052 -5.820 -1.482 0.999 -1.675 0.412 D 193 191 3 194 3 0 0 57 128 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 68 - U - - - ML 195 194 3 197 3 1 1 60 131 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 196 194 3 197 3 0 0 55 125 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 69 - U - - - ML 198 197 3 200 3 1 1 57 128 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 199 197 3 200 3 0 0 52 122 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 70 - U - - - ML 201 200 3 203 3 1 1 55 125 -5.820 -0.052 -5.820 -2.164 -1.751 -2.343 1.715 D 202 200 3 203 3 0 0 49 118 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 71 - G - - - ML 204 203 3 206 3 1 1 52 122 -5.820 -0.052 -5.820 -0.981 -2.401 1.617 -2.079 D 205 203 3 206 3 0 0 44 113 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 72 - G - - - ML 207 206 3 209 3 1 1 48 117 -5.820 -0.052 -5.820 -0.265 -1.997 1.378 -1.650 D 208 206 3 209 3 0 0 32 101 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 73 - G - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -2.115 -3.021 1.806 -2.744 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 71 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME GHRLOS ACC RF02126 DESC Ghrelin opposite strand RNA conserved region LENG 70 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:49:24 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 16 EFFN 3.449219 STATS LOCAL MSV -8.8716 0.71871 STATS LOCAL VITERBI -9.1046 0.71871 STATS LOCAL FORWARD -3.4835 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56184 1.48411 1.31843 1.21742 1.38629 1.38629 1.38629 1.38629 0.02103 5.17476 4.18958 0.39730 1.11515 0.00000 * 1 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 2 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 3 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 4 0.12719 3.34308 3.15079 3.18729 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 5 2.31526 2.13028 0.35954 2.47147 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 6 0.40801 1.96579 2.45638 2.21424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 7 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08503 4.03410 2.75178 1.46634 0.26236 1.09861 0.40547 8 2.68203 0.33330 2.83653 1.85538 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03782 3.98689 3.98689 1.46634 0.26236 1.72366 0.19652 9 1.25753 2.16887 0.85592 1.73474 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03782 3.98689 3.98689 1.46634 0.26236 1.72366 0.19652 10 2.97418 0.19441 3.12597 2.50479 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03782 3.98689 3.98689 1.46634 0.26236 0.44134 1.03051 11 3.07207 0.17564 3.22875 2.58833 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 12 2.37692 0.79244 2.50834 0.98612 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 13 2.61675 0.42145 2.76545 1.57060 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 14 0.76654 2.07823 1.54274 1.62741 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 15 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 16 2.45787 0.60932 2.59485 1.21737 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 17 2.50544 1.81392 2.64105 0.37971 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 18 2.42110 0.67712 2.55552 1.12255 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 19 2.40206 1.49599 2.53332 0.50080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 20 2.03014 1.09971 1.88267 0.95833 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 21 3.07207 0.17564 3.22875 2.58833 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 22 2.42258 0.67404 2.55711 1.12661 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 23 1.00007 2.07860 1.18033 1.61013 - a - - : 1.38629 1.38629 1.38629 1.38629 0.10237 2.53074 4.03410 0.05471 2.93300 1.09861 0.40547 24 2.35469 1.26636 2.48383 0.61656 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 25 2.42421 2.33613 2.10604 0.36668 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 26 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 27 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 28 3.07207 0.17564 3.22875 2.58833 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 29 2.02012 0.94631 1.80096 1.15820 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 30 0.92302 1.55860 1.73718 1.53137 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 31 1.95216 2.98774 0.29529 2.75964 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 32 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 33 2.37692 0.79244 2.50834 0.98612 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 34 0.32539 2.74416 2.01233 2.52855 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 35 2.05692 1.73503 1.81503 0.62937 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 36 2.35809 1.28906 2.48737 0.60378 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 37 3.07207 0.17564 3.22875 2.58833 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 38 2.37076 0.81438 2.50176 0.96303 - c - - : 1.38629 1.38629 1.38629 1.38629 0.27619 1.49776 4.03410 0.01696 4.08542 1.09861 0.40547 39 1.69740 2.05188 1.74794 0.66511 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 40 2.32185 2.70881 0.34840 2.04428 - G - - : 1.38629 1.38629 1.38629 1.38629 0.10083 2.54831 4.03410 0.05590 2.91193 1.09861 0.40547 41 0.31919 2.75542 2.03347 2.54086 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 42 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 43 0.12719 3.34308 3.15079 3.18729 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 44 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 45 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 46 0.12719 3.34308 3.15079 3.18729 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 47 2.54074 1.90377 2.67749 0.35176 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 48 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 49 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 50 0.39758 2.42113 2.45936 1.87246 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 51 2.40945 1.52343 2.54105 0.48876 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 52 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 53 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 54 2.34280 2.74815 0.32957 2.11478 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 55 0.12719 3.34308 3.15079 3.18729 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 56 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 57 3.07207 0.17564 3.22875 2.58833 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 58 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 59 2.04006 0.35216 2.75144 2.27324 - C - - : 1.38629 1.38629 1.38629 1.38629 0.10083 4.03410 2.54831 1.46634 0.26236 1.09861 0.40547 60 0.15139 3.18002 2.99514 3.01859 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03841 3.97168 3.97168 1.46634 0.26236 1.85918 0.16937 61 0.71637 2.36155 1.21452 2.11733 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03841 3.97168 3.97168 1.46634 0.26236 0.37339 1.16603 62 0.12719 3.34308 3.15079 3.18729 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 63 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 64 2.41330 0.69396 2.54719 1.10085 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 65 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 66 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03604 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 67 2.88633 2.59965 3.01061 0.19765 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 68 2.06635 3.05053 0.26547 2.82725 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 69 1.57002 2.77082 0.43123 2.53028 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 70 2.85225 3.48009 0.13450 3.28811 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //