INFERNAL1/a [1.1.5 | Sep 2023] NAME JPX_2 ACC RF02125 DESC JPX transcript, XIST activator conserved region 2 STATES 211 NODES 71 CLEN 69 W 146 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 09:16:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02125/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 4.917236 CKSUM 4185709674 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.40 NC 47.50 EFP7GF -10.4319 0.71876 ECMLC 0.66467 -9.40830 0.24550 1600000 734277 0.001634 ECMGC 0.39456 -18.63162 -4.71177 1600000 97122 0.004119 ECMLI 0.56267 -8.73893 1.64750 1600000 414246 0.002897 ECMGI 0.40481 -12.28140 0.42295 1600000 68481 0.005841 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 146 228 -7.834 -8.041 -0.029 -6.455 IL 1 1 2 1 4 1 28 148 230 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 148 230 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 27 146 228 -6.153 -0.041 -6.153 -2.005 -0.338 -2.217 1.457 D 4 2 3 5 3 0 22 143 225 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 28 153 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 26 145 227 -6.153 -0.041 -6.153 1.901 -3.695 -3.335 -3.500 D 7 5 3 8 3 0 21 142 223 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 28 152 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 25 144 225 -6.153 -0.041 -6.153 -1.818 -1.711 -0.914 1.526 D 10 8 3 11 3 0 21 141 222 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 27 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 24 142 224 -6.153 -0.041 -6.153 -2.322 1.503 -2.563 -0.330 D 13 11 3 14 3 0 20 139 221 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 26 149 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 24 141 223 -6.153 -0.041 -6.153 -0.352 -1.550 1.119 -0.510 D 16 14 3 17 3 0 19 138 219 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 25 148 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 23 140 221 -6.153 -0.041 -6.153 -2.613 -3.700 1.874 -3.428 D 19 17 3 20 3 0 18 137 218 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 24 147 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 22 139 220 -6.153 -0.041 -6.153 1.613 -2.468 -0.898 -2.156 D 22 20 3 23 3 0 18 136 217 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 24 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 21 137 218 -6.153 -0.041 -6.153 -0.234 -1.091 1.189 -1.320 D 25 23 3 26 3 0 17 134 215 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 23 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 20 136 217 -6.153 -0.126 -3.847 1.901 -3.695 -3.335 -3.500 D 28 26 3 29 3 0 16 133 214 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 23 143 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 20 135 216 -6.071 -0.044 -6.071 1.388 -2.017 -0.281 -1.679 D 31 29 3 32 3 0 15 131 212 -12.762 -2.796 -0.224 IL 32 32 3 32 3 1 22 142 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 19 134 214 -6.071 -0.044 -6.071 -1.793 -0.037 -1.994 1.314 D 34 32 3 35 3 0 15 131 211 -12.762 -2.796 -0.224 IL 35 35 3 35 3 1 21 141 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 18 132 213 -6.071 -0.044 -6.071 1.886 -3.483 -3.149 -3.281 D 37 35 3 38 3 0 15 130 211 -12.762 -0.490 -1.796 IL 38 38 3 38 3 1 20 139 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 18 131 212 -6.153 -0.041 -6.153 1.613 -2.468 -0.898 -2.156 D 40 38 3 41 3 0 13 128 208 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 19 138 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 17 130 210 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 43 41 3 44 3 0 12 127 207 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 18 137 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 16 129 209 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 46 44 3 47 3 0 11 126 205 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 18 136 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 15 127 207 -6.153 -0.041 -6.153 -2.017 -0.375 -2.229 1.469 D 49 47 3 50 3 0 11 124 204 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 17 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 14 126 206 -6.153 -0.041 -6.153 -0.672 1.142 -1.611 -0.254 D 52 50 3 53 3 0 10 123 203 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 16 133 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 14 125 205 -6.153 -0.041 -6.153 -1.612 -1.585 -0.519 1.402 D 55 53 3 56 3 0 9 122 201 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 15 132 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 13 123 203 -6.153 -0.041 -6.153 -2.155 1.359 -2.382 0.026 D 58 56 3 59 3 0 9 120 200 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 14 131 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 12 122 202 -6.153 -0.041 -6.153 -2.017 -0.375 -2.229 1.469 D 61 59 3 62 3 0 8 119 198 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 13 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 11 121 200 -6.153 -0.041 -6.153 -2.340 1.517 -2.584 -0.370 D 64 62 3 65 3 0 7 118 197 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 13 128 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 10 120 199 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 67 65 3 68 3 0 7 117 196 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 12 127 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 9 118 197 -6.153 -0.204 -3.084 -2.340 1.517 -2.584 -0.370 D 70 68 3 71 3 0 6 115 194 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 12 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - c - - - ML 72 71 3 74 3 1 9 117 196 -5.995 -0.046 -5.995 -0.989 0.725 0.003 -0.250 D 73 71 3 74 3 0 5 114 193 -13.344 -3.378 -0.146 IL 74 74 3 74 3 1 11 124 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - u - - - ML 75 74 3 77 3 1 9 116 195 -5.995 -0.046 -5.995 -0.999 0.318 -0.652 0.693 D 76 74 3 77 3 0 5 114 193 -13.344 -0.308 -2.378 IL 77 77 3 77 3 1 10 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 78 77 3 80 3 1 8 115 193 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 79 77 3 80 3 0 3 111 190 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 9 122 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - a - - - ML 81 80 3 83 3 1 7 113 192 -6.153 -0.041 -6.153 0.776 -1.973 0.771 -1.617 D 82 80 3 83 3 0 2 110 188 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 9 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 7 112 190 -6.153 -0.041 -6.153 1.492 -0.740 -2.003 -1.557 D 85 83 3 86 3 0 1 109 187 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 8 119 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 6 111 189 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 88 86 3 89 3 0 1 107 185 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 7 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 90 89 3 92 3 1 5 109 187 -6.153 -0.041 -6.153 -2.471 1.602 -2.727 -0.658 D 91 89 3 92 3 0 0 106 184 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 7 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - a - - - ML 93 92 3 95 3 1 5 108 186 -6.153 -0.041 -6.153 0.914 -1.946 0.609 -1.592 D 94 92 3 95 3 0 0 105 182 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 6 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - C - - - ML 96 95 3 98 3 1 4 107 184 -6.153 -0.041 -6.153 -2.340 1.517 -2.584 -0.370 D 97 95 3 98 3 0 0 103 181 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 6 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 99 98 3 101 3 1 4 105 183 -6.153 -0.041 -6.153 -2.095 1.293 -2.317 0.156 D 100 98 3 101 3 0 0 102 179 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 5 113 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 102 101 3 104 3 1 3 104 181 -6.153 -0.041 -6.153 -1.612 -1.585 -0.519 1.402 D 103 101 3 104 3 0 0 101 178 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 5 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 105 104 3 107 3 1 3 103 180 -6.153 -0.041 -6.153 -0.086 -1.454 -1.617 1.243 D 106 104 3 107 3 0 0 99 176 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 4 110 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 2 101 178 -6.153 -0.041 -6.153 1.551 -1.911 -2.062 -0.824 D 109 107 3 110 3 0 0 98 175 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 4 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - - - ML 111 110 3 113 3 1 2 100 177 -6.153 -0.041 -6.153 -2.340 1.517 -2.584 -0.370 D 112 110 3 113 3 0 0 97 173 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 3 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 114 113 3 116 3 1 2 98 175 -6.153 -0.041 -6.153 -1.867 0.221 -2.070 1.215 D 115 113 3 116 3 0 0 95 172 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - u - - - ML 117 116 3 119 3 1 1 97 174 -6.153 -0.041 -6.153 0.004 -1.064 -0.284 0.764 D 118 116 3 119 3 0 0 94 170 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 105 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - c - - - ML 120 119 3 122 3 1 1 96 172 -6.153 -0.041 -6.153 -0.378 0.833 -1.345 0.078 D 121 119 3 122 3 0 0 92 169 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - - - ML 123 122 3 125 3 1 1 94 171 -6.153 -0.041 -6.153 -1.944 1.053 -2.153 0.526 D 124 122 3 125 3 0 0 91 167 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 102 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 126 125 3 128 3 1 1 93 169 -6.153 -0.041 -6.153 1.901 -3.695 -3.335 -3.500 D 127 125 3 128 3 0 0 90 166 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - C - - - ML 129 128 3 131 3 1 1 92 168 -6.153 -0.041 -6.153 -2.540 1.640 -2.802 -0.818 D 130 128 3 131 3 0 0 88 164 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - u - - - ML 132 131 3 134 3 1 1 90 166 -6.153 -0.041 -6.153 -0.988 -0.572 0.162 0.769 D 133 131 3 134 3 0 0 87 162 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 135 134 3 137 3 1 1 89 164 -6.153 -0.041 -6.153 -1.016 -2.881 1.678 -2.557 D 136 134 3 137 3 0 0 85 161 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 97 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 138 137 3 140 3 1 1 87 163 -6.153 -0.041 -6.153 1.901 -3.695 -3.335 -3.500 D 139 137 3 140 3 0 0 84 159 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 141 140 3 143 3 1 1 86 161 -6.153 -0.041 -6.153 -1.855 0.306 -2.057 1.168 D 142 140 3 143 3 0 0 83 157 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 144 143 3 146 3 1 1 84 159 -6.153 -0.041 -6.153 -2.613 -3.700 1.874 -3.428 D 145 143 3 146 3 0 0 81 156 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 147 146 3 149 3 1 1 83 158 -6.153 -0.041 -6.153 1.901 -3.695 -3.335 -3.500 D 148 146 3 149 3 0 0 80 154 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - G - - - ML 150 149 3 152 3 1 1 82 156 -6.153 -0.041 -6.153 0.014 -2.337 1.345 -1.987 D 151 149 3 152 3 0 0 78 152 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 90 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 153 152 3 155 3 1 1 80 154 -6.153 -0.041 -6.153 -1.632 -0.802 1.500 -1.861 D 154 152 3 155 3 0 0 77 151 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - c - - - ML 156 155 3 158 3 1 1 79 153 -6.153 -0.041 -6.153 -0.063 0.928 -1.396 -0.395 D 157 155 3 158 3 0 0 75 149 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - U - - - ML 159 158 3 161 3 1 1 77 151 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 160 158 3 161 3 0 0 74 147 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - a - - - ML 162 161 3 164 3 1 1 76 149 -6.153 -0.041 -6.153 0.974 -1.154 -0.509 -0.178 D 163 161 3 164 3 0 0 72 145 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - G - - - ML 165 164 3 167 3 1 1 74 147 -6.153 -0.041 -6.153 -2.613 -3.700 1.874 -3.428 D 166 164 3 167 3 0 0 70 143 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 83 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - G - - - ML 168 167 3 170 3 1 1 72 146 -6.153 -0.041 -6.153 -0.953 -2.850 1.665 -2.523 D 169 167 3 170 3 0 0 69 142 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - a - - - ML 171 170 3 173 3 1 1 71 144 -6.153 -0.041 -6.153 0.839 -1.366 -1.442 0.541 D 172 170 3 173 3 0 0 67 140 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 174 173 3 176 3 1 1 69 142 -6.153 -0.041 -6.153 0.260 -2.200 1.206 -1.846 D 175 173 3 176 3 0 0 65 138 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - G - - - ML 177 176 3 179 3 1 1 68 140 -6.153 -0.041 -6.153 -2.613 -3.700 1.874 -3.428 D 178 176 3 179 3 0 0 64 136 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 77 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - U - - - ML 180 179 3 182 3 1 1 66 138 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 181 179 3 182 3 0 0 62 134 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - U - - - ML 183 182 3 185 3 1 1 64 136 -6.153 -0.041 -6.153 -2.866 -2.334 -3.063 1.826 D 184 182 3 185 3 0 0 60 131 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - G - - - ML 186 185 3 188 3 1 1 62 134 -6.153 -0.041 -6.153 -0.748 -1.752 1.298 -0.625 D 187 185 3 188 3 0 0 58 129 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - C - - - ML 189 188 3 191 3 1 1 60 132 -6.153 -0.041 -6.153 -3.091 1.841 -3.344 -2.308 D 190 188 3 191 3 0 0 56 127 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - A - - - ML 192 191 3 194 3 1 1 58 129 -6.153 -0.041 -6.153 1.127 -1.961 0.301 -1.610 D 193 191 3 194 3 0 0 54 124 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - G - - - ML 195 194 3 197 3 1 1 56 127 -6.153 -0.041 -6.153 -1.730 -1.425 1.633 -2.157 D 196 194 3 197 3 0 0 51 121 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 67 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - A - - - ML 198 197 3 200 3 1 1 54 124 -6.153 -0.041 -6.153 1.901 -3.695 -3.335 -3.500 D 199 197 3 200 3 0 0 48 117 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 66 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - A - - - ML 201 200 3 203 3 1 1 51 121 -6.153 -0.041 -6.153 1.535 -0.887 -2.073 -1.631 D 202 200 3 203 3 0 0 43 113 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - a - - - ML 204 203 3 206 3 1 1 47 116 -6.153 -0.041 -6.153 0.776 -1.973 0.771 -1.617 D 205 203 3 206 3 0 0 32 101 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -1.656 1.116 0.165 -1.343 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME JPX_2 ACC RF02125 DESC JPX transcript, XIST activator conserved region 2 LENG 69 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Jul 10 09:16:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02125/CM NSEQ 11 EFFN 4.917236 CKSUM 4185709674 STATS LOCAL MSV -8.4060 0.71876 STATS LOCAL VITERBI -8.9646 0.71876 STATS LOCAL FORWARD -3.9155 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33017 1.52586 1.49063 1.22791 1.38629 1.38629 1.38629 1.38629 0.01625 5.43036 4.44518 0.39730 1.11515 0.00000 * 1 2.77614 1.62075 2.92283 0.37660 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 2 0.06845 3.94752 3.69823 3.81251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 3 2.64640 2.57198 2.01970 0.32848 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 4 2.99544 0.34419 3.16302 1.61498 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 5 1.63024 2.46085 0.61039 1.73946 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 6 3.19745 3.95081 0.08701 3.76264 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 7 0.26846 3.09730 2.00857 2.88070 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 8 1.54862 2.14271 0.56216 2.30115 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 9 0.06845 3.94752 3.69823 3.81251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.08724 4.26510 2.66650 1.46634 0.26236 1.09861 0.40547 10 0.42408 2.78409 1.58094 2.55024 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03020 4.20806 4.20806 1.46634 0.26236 1.93818 0.15544 11 2.62879 1.41229 2.76860 0.47562 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03020 4.20806 4.20806 1.46634 0.26236 1.93818 0.15544 12 0.07932 3.80042 3.56930 3.66055 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03020 4.20806 4.20806 1.46634 0.26236 0.33958 1.24504 13 0.26846 3.09730 2.00856 2.88070 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 14 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 15 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 16 2.78435 1.64609 2.93155 0.36800 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 17 1.85192 0.59494 2.50310 1.56238 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 18 2.50361 2.48484 1.74623 0.41485 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 19 2.87994 0.44421 3.03715 1.36823 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 20 2.78435 1.64609 2.93155 0.36800 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 21 3.00835 0.33480 3.17715 1.64277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 22 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 23 3.00835 0.33480 3.17715 1.64277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.14157 4.26510 2.13745 1.46634 0.26236 1.09861 0.40547 24 2.07173 0.88385 1.38403 1.55934 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03186 4.15540 4.15540 1.46634 0.26236 2.34134 0.10115 25 2.07864 1.16577 1.83850 0.90594 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03186 4.15540 4.15540 1.46634 0.26236 0.21368 1.64820 26 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 27 0.84840 2.75361 0.85169 2.50704 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 28 0.35238 1.89938 2.77451 2.46575 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 29 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 30 3.09886 0.27611 3.27632 1.84261 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 31 0.75296 2.73542 0.96440 2.48952 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 32 3.00835 0.33480 3.17715 1.64277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 33 2.83878 0.48972 2.99249 1.27818 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 34 2.50361 2.48484 1.74623 0.41485 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 35 1.44624 2.39410 2.50711 0.52461 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 36 0.31138 2.71063 2.81577 1.95752 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 37 3.00835 0.33480 3.17715 1.64277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 38 2.68028 1.23301 2.82102 0.54387 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 39 1.38384 2.12391 1.58305 0.85690 - u - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 40 1.64805 0.80924 2.31865 1.33192 - c - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 41 2.73344 0.65639 2.87874 1.02143 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 42 0.06845 3.94752 3.69823 3.81251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 43 3.14669 0.24924 3.32875 1.95349 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 44 2.07088 1.78257 1.27411 0.85322 - u - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 45 2.09052 3.38346 0.22320 3.15853 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 46 0.06845 3.94752 3.69823 3.81251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 47 2.67216 1.17401 2.81243 0.57676 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 48 3.19745 3.95081 0.08701 3.76264 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 49 0.06845 3.94752 3.69823 3.81251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 50 1.37644 3.00608 0.45419 2.76338 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 51 2.51749 1.94249 0.34652 2.67591 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 52 1.42969 0.74339 2.35418 1.65996 - c - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 53 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 54 0.71122 2.18609 1.73932 1.50978 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 55 3.19745 3.95081 0.08701 3.76264 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 56 2.04670 3.36163 0.23235 3.13518 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 57 0.80453 2.33335 2.38580 1.01138 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 58 1.20584 2.91097 0.55059 2.66601 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 59 3.19745 3.95081 0.08701 3.76264 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 60 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 61 3.37293 3.00397 3.50943 0.12080 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 62 1.90504 2.60095 0.48626 1.81980 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 63 3.52881 0.11034 3.70389 2.98576 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 64 0.60539 2.74522 1.17770 2.50203 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 65 2.58574 2.37432 0.25419 2.88168 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 66 0.06845 3.94752 3.69823 3.81251 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 67 0.32205 2.00094 2.82313 2.51692 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 68 0.84840 2.75361 0.85169 2.50704 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02850 4.26510 4.26510 1.46634 0.26236 1.09861 0.40547 69 2.53383 0.61268 1.27213 2.31752 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //