INFERNAL1/a [1.1.5 | Sep 2023] NAME FTX_1 ACC RF02119 DESC FTX transcript, XIST regulator conserved region 1 STATES 217 NODES 73 CLEN 71 W 151 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 23:17:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02119/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 3.885986 CKSUM 2166597288 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.00 NC 38.90 EFP7GF -9.9208 0.71871 ECMLC 0.65384 -9.73548 -0.09407 1600000 656069 0.001829 ECMGC 0.38699 -17.70235 -3.74306 1600000 88748 0.004507 ECMLI 0.53109 -9.62124 1.28393 1600000 393060 0.003053 ECMGI 0.41435 -10.21476 1.92949 1600000 61295 0.006526 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 235 -7.585 -7.793 -0.034 -6.207 IL 1 1 2 1 4 1 28 153 237 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 28 153 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 27 152 235 -5.927 -0.048 -5.927 1.058 -0.649 -0.534 -0.760 D 4 2 3 5 3 0 23 148 231 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 29 158 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 27 150 233 -5.927 -0.048 -5.927 -0.504 0.712 0.055 -0.694 D 7 5 3 8 3 0 22 147 230 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 28 157 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 26 149 232 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 10 8 3 11 3 0 21 146 229 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 28 155 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 25 148 231 -5.927 -0.048 -5.927 -2.278 -3.247 1.832 -2.972 D 13 11 3 14 3 0 20 145 227 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 27 154 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 24 146 229 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 16 14 3 17 3 0 19 143 226 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 26 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 24 145 228 -5.927 -0.048 -5.927 -2.278 -3.247 1.832 -2.972 D 19 17 3 20 3 0 19 142 224 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 25 152 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 23 144 226 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 22 20 3 23 3 0 18 141 223 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 24 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 22 143 225 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 25 23 3 26 3 0 17 140 222 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 24 149 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 3 1 21 141 224 -5.927 -0.048 -5.927 0.749 -0.063 -0.483 -0.630 D 28 26 3 29 3 0 16 138 220 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 23 148 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 30 29 3 32 3 1 20 140 222 -5.927 -0.048 -5.927 -0.199 0.675 -0.508 -0.270 D 31 29 3 32 3 0 16 137 219 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 22 147 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 20 139 221 -5.927 -0.048 -5.927 -2.652 1.783 -2.888 -1.923 D 34 32 3 35 3 0 15 136 217 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 21 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 19 137 219 -5.927 -0.048 -5.927 -1.775 -0.647 -1.978 1.493 D 37 35 3 38 3 0 14 134 216 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 21 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 18 136 218 -5.927 -0.048 -5.927 -2.278 -3.247 1.832 -2.972 D 40 38 3 41 3 0 13 133 215 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 20 143 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 17 135 216 -5.927 -0.048 -5.927 -1.774 -0.646 -1.978 1.493 D 43 41 3 44 3 0 13 132 213 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 19 142 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 17 134 215 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 46 44 3 47 3 0 12 130 212 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 18 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - c - - - ML 48 47 3 50 3 1 16 132 214 -5.927 -0.048 -5.927 0.003 0.842 -1.205 -0.374 D 49 47 3 50 3 0 11 129 210 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 18 139 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - c - - - ML 51 50 3 53 3 1 15 131 212 -5.927 -0.048 -5.927 -1.113 0.999 -0.362 -0.395 D 52 50 3 53 3 0 11 128 209 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 17 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 14 130 211 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 55 53 3 56 3 0 10 127 207 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 16 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 14 128 209 -5.927 -0.048 -5.927 -0.623 -0.519 -1.287 1.165 D 58 56 3 59 3 0 9 125 206 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 15 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 13 127 208 -5.927 -0.048 -5.927 -1.519 -1.432 -0.863 1.449 D 61 59 3 62 3 0 9 124 204 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 15 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 12 126 206 -5.927 -0.048 -5.927 -2.278 -3.247 1.832 -2.972 D 64 62 3 65 3 0 8 123 203 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 14 133 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 11 124 205 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 67 65 3 68 3 0 7 121 202 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 13 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 10 123 203 -5.927 -0.048 -5.927 -0.790 1.278 -1.641 -0.566 D 70 68 3 71 3 0 7 120 200 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 12 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 10 122 202 -5.927 -0.137 -3.753 -2.652 1.783 -2.888 -1.923 D 73 71 3 74 3 0 6 119 199 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 12 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 10 121 201 -5.842 -0.051 -5.842 1.824 -2.880 -2.599 -2.657 D 76 74 3 77 3 0 5 118 197 -12.670 -2.704 -0.241 IL 77 77 3 77 3 1 11 128 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - g - - - ML 78 77 3 80 3 1 9 119 199 -5.842 -0.051 -5.842 -0.900 -0.386 0.954 -0.393 D 79 77 3 80 3 0 5 117 197 -12.670 -0.529 -1.704 IL 80 80 3 80 3 1 10 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 8 118 198 -5.927 -0.048 -5.927 1.496 -2.001 -0.695 -1.679 D 82 80 3 83 3 0 3 115 194 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 10 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 8 117 196 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 85 83 3 86 3 0 2 113 193 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 9 124 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 3 1 7 115 195 -5.927 -0.048 -5.927 -2.652 1.783 -2.888 -1.923 D 88 86 3 89 3 0 2 112 191 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 8 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - a - - - ML 90 89 3 92 3 1 6 114 193 -5.927 -0.048 -5.927 0.583 -0.556 -0.987 0.397 D 91 89 3 92 3 0 1 111 190 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 8 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 6 113 192 -5.927 -0.048 -5.927 -2.652 1.783 -2.888 -1.923 D 94 92 3 95 3 0 1 109 188 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 7 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - a - - - ML 96 95 3 98 3 1 5 111 190 -5.927 -0.048 -5.927 0.713 0.538 -1.368 -0.940 D 97 95 3 98 3 0 0 108 187 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 7 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 99 98 3 101 3 1 5 110 189 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 100 98 3 101 3 0 0 107 185 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 6 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 102 101 3 104 3 1 4 108 187 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 103 101 3 104 3 0 0 105 184 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 5 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 105 104 3 107 3 1 4 107 186 -5.927 -0.048 -5.927 -1.546 0.149 -1.738 1.169 D 106 104 3 107 3 0 0 104 182 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 5 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 108 107 3 110 3 1 3 106 184 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 109 107 3 110 3 0 0 103 181 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 4 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 3 104 183 -5.927 -0.048 -5.927 -0.605 -1.393 1.115 -0.329 D 112 110 3 113 3 0 0 101 179 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 4 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 2 103 181 -5.927 -0.048 -5.927 1.532 -2.060 -0.809 -1.744 D 115 113 3 116 3 0 0 100 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - - - ML 117 116 3 119 3 1 2 102 179 -5.927 -0.048 -5.927 -1.455 -1.136 1.525 -1.728 D 118 116 3 119 3 0 0 98 176 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 3 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 120 119 3 122 3 1 2 100 178 -5.927 -0.048 -5.927 1.285 -1.758 -0.163 -1.416 D 121 119 3 122 3 0 0 97 174 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 3 108 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 123 122 3 125 3 1 1 99 176 -5.927 -0.048 -5.927 -1.556 0.093 -1.748 1.199 D 124 122 3 125 3 0 0 96 173 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 126 125 3 128 3 1 1 97 175 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 127 125 3 128 3 0 0 94 171 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 2 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 129 128 3 131 3 1 1 96 173 -5.927 -0.048 -5.927 -1.214 -1.256 -0.209 1.192 D 130 128 3 131 3 0 0 93 169 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 2 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - C - - - ML 132 131 3 134 3 1 1 95 171 -5.927 -0.048 -5.927 -1.717 1.186 -1.923 0.209 D 133 131 3 134 3 0 0 91 168 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 135 134 3 137 3 1 1 93 170 -5.927 -0.048 -5.927 1.042 0.073 -1.389 -0.980 D 136 134 3 137 3 0 0 90 166 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 138 137 3 140 3 1 1 92 168 -5.927 -0.048 -5.927 1.056 -0.629 -0.550 -0.758 D 139 137 3 140 3 0 0 88 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 141 140 3 143 3 1 1 90 167 -5.927 -0.048 -5.927 -1.621 -0.187 -1.817 1.329 D 142 140 3 143 3 0 0 87 163 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 144 143 3 146 3 1 1 89 165 -5.927 -0.048 -5.927 -0.928 -2.523 1.624 -2.197 D 145 143 3 146 3 0 0 85 161 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - G - - - ML 147 146 3 149 3 1 1 87 163 -5.927 -0.048 -5.927 -2.278 -3.247 1.832 -2.972 D 148 146 3 149 3 0 0 84 159 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - A - - - ML 150 149 3 152 3 1 1 86 162 -5.927 -0.048 -5.927 1.023 -0.570 -0.530 -0.734 D 151 149 3 152 3 0 0 82 158 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - A - - - ML 153 152 3 155 3 1 1 84 160 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 154 152 3 155 3 0 0 81 156 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 83 158 -5.927 -0.048 -5.927 -0.066 -0.912 1.010 -1.004 D 157 155 3 158 3 0 0 79 154 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - g - - - ML 159 158 3 161 3 1 1 81 156 -5.927 -0.048 -5.927 0.016 -0.113 0.523 -0.674 D 160 158 3 161 3 0 0 78 152 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 90 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 162 161 3 164 3 1 1 80 155 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 163 161 3 164 3 0 0 76 151 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 165 164 3 167 3 1 1 78 153 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 166 164 3 167 3 0 0 75 149 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - U - - - ML 168 167 3 170 3 1 1 77 151 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 169 167 3 170 3 0 0 73 147 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - A - - - ML 171 170 3 173 3 1 1 75 149 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 172 170 3 173 3 0 0 72 145 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 174 173 3 176 3 1 1 74 147 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 175 173 3 176 3 0 0 70 143 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - U - - - ML 177 176 3 179 3 1 1 72 145 -5.927 -0.048 -5.927 -1.546 0.149 -1.738 1.169 D 178 176 3 179 3 0 0 68 141 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - U - - - ML 180 179 3 182 3 1 1 70 143 -5.927 -0.048 -5.927 -0.830 -1.428 -1.739 1.468 D 181 179 3 182 3 0 0 66 139 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - C - - - ML 183 182 3 185 3 1 1 69 141 -5.927 -0.048 -5.927 -2.652 1.783 -2.888 -1.923 D 184 182 3 185 3 0 0 65 137 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 78 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - C - - - ML 186 185 3 188 3 1 1 67 139 -5.927 -0.048 -5.927 -1.884 1.379 -2.103 -0.158 D 187 185 3 188 3 0 0 63 135 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - U - - - ML 189 188 3 191 3 1 1 65 137 -5.927 -0.048 -5.927 -2.389 -1.937 -2.575 1.757 D 190 188 3 191 3 0 0 61 133 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - C - - - ML 192 191 3 194 3 1 1 63 135 -5.927 -0.048 -5.927 -2.652 1.783 -2.888 -1.923 D 193 191 3 194 3 0 0 59 130 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - c - - - ML 195 194 3 197 3 1 1 61 133 -5.927 -0.048 -5.927 0.008 0.804 -1.177 -0.310 D 196 194 3 197 3 0 0 57 128 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - U - - - ML 198 197 3 200 3 1 1 59 130 -5.927 -0.048 -5.927 -1.132 -1.213 0.051 1.054 D 199 197 3 200 3 0 0 54 125 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - A - - - ML 201 200 3 203 3 1 1 57 128 -5.927 -0.048 -5.927 1.851 -3.106 -2.810 -2.891 D 202 200 3 203 3 0 0 52 122 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - A - - - ML 204 203 3 206 3 1 1 54 125 -5.927 -0.048 -5.927 1.185 -1.306 -1.372 -0.095 D 205 203 3 206 3 0 0 48 118 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - U - - - ML 207 206 3 209 3 1 1 52 121 -5.927 -0.048 -5.927 -1.609 -0.144 -1.805 1.311 D 208 206 3 209 3 0 0 44 113 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - C - - - ML 210 209 3 212 3 1 1 48 117 -5.927 -0.048 -5.927 -2.652 1.783 -2.888 -1.923 D 211 209 3 212 3 0 0 32 101 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - C - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 -2.089 1.538 -2.325 -0.595 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME FTX_1 ACC RF02119 DESC FTX transcript, XIST regulator conserved region 1 LENG 71 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 6 23:17:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02119/CM NSEQ 11 EFFN 3.885986 CKSUM 2166597288 STATS LOCAL MSV -8.6650 0.71871 STATS LOCAL VITERBI -8.9519 0.71871 STATS LOCAL FORWARD -3.5358 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34309 1.43938 1.67320 1.15759 1.38629 1.38629 1.38629 1.38629 0.01934 5.25785 4.27268 0.39730 1.11515 0.00000 * 1 0.65326 1.83615 1.75667 1.91323 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 2 1.73542 0.89276 1.34846 1.86748 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 3 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 4 2.96504 3.63687 0.11625 3.44653 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 5 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 6 2.96504 3.63687 0.11625 3.44653 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 7 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 8 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 9 0.86706 1.42982 1.72110 1.82267 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 10 1.52423 0.91836 1.73873 1.57363 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 11 3.22421 0.15025 3.38783 2.71906 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 12 2.61635 1.83480 2.75745 0.35122 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 13 2.96504 3.63687 0.11625 3.44653 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 14 2.61608 1.83409 2.75717 0.35143 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 15 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 16 1.38438 0.80251 2.22183 1.64554 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 17 2.15743 0.69366 1.63696 1.66040 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 18 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 19 1.81803 1.74607 2.27822 0.57852 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 20 2.43906 2.37912 1.98454 0.38173 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 21 2.96504 3.63687 0.11625 3.44653 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 22 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 23 1.93368 0.50035 2.52348 1.77852 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 24 3.22421 0.15025 3.38783 2.71906 - C - - : 1.38629 1.38629 1.38629 1.38629 0.09498 4.10857 2.60125 1.46634 0.26236 1.09861 0.40547 25 0.12200 3.38251 3.18793 3.22810 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03550 4.04909 4.04909 1.46634 0.26236 1.87405 0.16665 26 2.01029 1.65354 0.72499 1.65888 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03550 4.04909 4.04909 1.46634 0.26236 0.36673 1.18091 27 0.34950 2.77300 1.86825 2.54987 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 28 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 29 3.22421 0.15025 3.38783 2.71906 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 30 0.98213 1.77167 2.07028 1.11082 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 31 3.22421 0.15025 3.38783 2.71906 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 32 0.89234 1.01312 2.33418 2.03768 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 33 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 34 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 35 2.45765 1.28270 2.59077 0.57605 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 36 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 37 1.80545 2.35156 0.61363 1.61448 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 38 0.32471 2.81447 1.94722 2.59489 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 39 2.39487 2.17384 0.32904 2.58410 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 40 0.49569 2.60484 1.49942 2.36791 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 41 2.46449 1.32173 2.59795 0.55539 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 42 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 43 2.22778 2.25687 1.53111 0.55991 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 44 2.57649 0.56389 2.71888 1.24127 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 45 0.66407 1.33541 2.34911 2.06562 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 46 0.65447 1.82194 1.76770 1.91159 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 47 2.50991 1.51564 2.64572 0.46505 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 48 2.02960 3.13487 0.26061 2.90904 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 49 2.96504 3.63687 0.11625 3.44653 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 50 0.67687 1.78129 1.75385 1.89534 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 51 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 52 1.43173 2.01839 0.68602 2.08216 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 53 1.37507 1.46463 1.02356 1.85341 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 54 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 55 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 56 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 57 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 58 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 59 2.45765 1.28270 2.59077 0.57605 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 60 1.96128 2.37625 2.59150 0.36887 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 61 3.22421 0.15025 3.38783 2.71906 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 62 2.69241 0.43065 2.84380 1.49614 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 63 3.04252 2.72869 3.17140 0.16838 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 64 3.22421 0.15025 3.38783 2.71906 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 65 1.38083 0.82926 2.20193 1.60112 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 66 2.17071 2.22710 1.35096 0.65571 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 67 0.10357 3.53940 3.33372 3.39050 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 68 0.56511 2.29123 2.33757 1.45245 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 69 2.50180 1.48582 2.63719 0.47774 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 70 3.22421 0.15025 3.38783 2.71906 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03341 4.10857 4.10857 1.46634 0.26236 1.09861 0.40547 71 2.83456 0.32037 2.99772 1.79892 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //