# STOCKHOLM 1.0
#=GF ID FMR1-AS1_2
#=GF AC RF02118
#=GF DE FMR1 antisense RNA 1 conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 80.0
#=GF NC 62.7
#=GF TC 90.6
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 44.76 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF DR GO; 0043066; negative regulation of apoptotic process;
#=GF RN [1]
#=GF RM 17921506
#=GF RT An antisense transcript spanning the CGG repeat region of FMR1 is
#=GF RT upregulated in premutation carriers but silenced in full mutation
#=GF RT individuals.
#=GF RA Ladd PD, Smith LE, Rabaia NA, Moore JM, Georges SA, Hansen RS, Hagerman
#=GF RA RJ, Tassone F, Tapscott SJ, Filippova GN
#=GF RL Hum Mol Genet. 2007;16:3174-3187.
#=GF RN [2]
#=GF RM 18213394
#=GF RT A novel RNA transcript with antiapoptotic function is silenced in fragile
#=GF RT X syndrome.
#=GF RA Khalil AM, Faghihi MA, Modarresi F, Brothers SP, Wahlestedt C
#=GF RL PLoS One. 2008;3:e1486.
#=GF WK FMR1-AS1_gene
#=GF SQ 25

EU048202.1/635-509           GGCGGGGCCGAGGGG--CUGAGCCCGCGGGGGGAGGGAACAGCGUUGAUCACGUGACGUGGUUUCAGUGUUUACACCCG-CAGCGGGCCG--GGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
L29074.1/13604-13730         GGCGGGGCCGAGGGG--CUGAGCCCGCGGGGGGAGGGAACAGCGUUGAUCACGUGACGUGGUUUCAGUGUUUACACCCG-CAGCGGGCCG--GGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
EU048204.1/551-425           GGCGGGGCCGAGGGG--CUGAGCCCGCGGGGGGAGGGAACAGCGUUGAUCACGUGACGUGGUUUCAGUGUUUACACCCG-CAGCGGGCCG--GGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
EU048200.1/635-509           GGCGGGGCCGAGGGG--CUGAGCCCGCGGGGGGAGGGAACAGCGUUGAUCACGUGACGUGGUUUCAGUGUUUACACCCG-CAGCGGGCCG--GGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
EU048203.1/635-509           GGCGGGGCCGAGGGG--CUGAGCCCGCGGGGGGAGGGAACAGCGUUGAUCACGUGACGUGGUUUCAGUGUUUACACCCG-CAGCGGGCCG--GGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
EU048201.1/635-509           GGCGGGGCCGAGGGG--CUGAGCCCGCGGGGGGAGGGAACAGCGUUGAUCACGUGACGUGGUUUCAGUGUUUACACCCG-CAGCGGGCCG--GGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
AANU01202631.1/13495-13367   GGCGGGGCCGAGGGG--CUGAGCCCGCUGGGGGAGGGAACAGCGUUUAUGACGUGACGUGGUUUCAGUGUUUACACGCG-CAGCGGUCUUUUAGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
ABRP01270137.1/3081-3207     GGCGGGGCUGAGGGG--CCGAACCCGCGGGGGGGAGGGGCGGCGUCGGUCACGUGACGAGGUUUCAGUGUUUACACGCG-GAGCGGCCAG--AGCGUUCGGC-------CUCAGUCAG----GCGCUCGCCUCCGUUUCGGUU
AAFC03039350.1/29361-29486   GGCGGGGCCGAGGGG--CCGAACCC-GCGGGGGGAGGGGCGGCGUCGGUCACAUGACGCGGUUUCACUGUUUACACGCG-GAGCGGCCGG--AUCCUUCGGC-------CUCAGUCAG----GCGCUCGGCUCCGUUUCGGUU
AAKN02048760.1/159-33        GGCGGGGCCGAGGGG-GCCGAGCCC-GCGGGGGAAGGGGCGGUGUGUGUCACGUGACGCGGCUUCACUGUUUACACGAG-GAGCAGGCCG--AGCGUUCGCC-------CUCAGUCAG----GCGCUCAGCUCCGUUUCGGUU
AAGV020291878.1/2299-2423    GGCGGGGCCGAGGGG-CCU-AGCCG-GCGGGGGGAGGGGCGGCGCCGGUCACAUGACGCCGUUUCACUGUUUACACGCG-GAGCAGCCGG---GCGUUCGGC-------CUCAGUCAA----GCGUUCGGCUCCGUUUCGGUU
AANG01461939.1/3424-3551     GGCGGGGCCGAGGGGGGCCAAGCCC-GCGGGGGGAGGGGCGGUGUCGGUCACGUGACGCUGUUUCACUGUUUACACGCG-GAGCGGCCGG--AGCUUUCGGC-------CUCAGUCAG----GCGCUCGGCUCCGUUUCGGUU
ABRO01306181.1/671-797       GGCGGGGCCGAGGGG-GCUGAGUCC-GCGGGAGGAGGGGCGGCGCCGGUCACGUGACCCGGUUUCACUGUUUACACGAG-GAGCGGCCCC--AGCCUUCGGC-------CUCAGUCAG----GCGCUCGGCUCCGUUUCGGCU
ABRQ01341770.1/482-613       GGCGGGGCCGAGGUG--CCAAGCCC-GCGAGGGGAGGGGCGGUGAGGGUCACGUGACGCGGCUUCACUGUUUACACGCG-GAGC-GGCCG--AGCGUUCGGCUUUCGGCCUCAGUCAG----GCGCUCCGCUCCGUUUCGGUU
AAIY01330092.1/1840-1709     GGCGGGGCCGAGGGG-GCUGAGCUA--GGGGGGGAGGGGCGGCAUGGGUCACGUGACGCGGCUCUACUGUUUACACGCG-GAUCUGCCCG---GCGCUCGCCGUUUCGCCUCAGUCAG----GCGCUCGGCUCCGUUUCGGUU
AANN01248869.1/1126-1004     GGCGGGGCGCAGAGG------AGCAGCCUGGGGGAGGGGCGGCUCCAGUCACGUGACACGACGGCGGUGUUUACACGCG-GGGCGGCUGA--GGCGUCCGGC-------CUCAGUCAG----GCGCUCGGCUCCGUUUCGCUU
AAFR03054339.1/16805-16928   GGCGGGG-CGGGGG---CGGAGAGAGGGCGGCGAGGGCGCGGCCUGGGUCACGUGACGGGAUUUCAGUGUUUACAUUCG-GAGCGGGACA--AGCCCACGGC-------UCUGUCCGC----CCGUUUGG-UCCCUUUCGGUU
ABQO010005013.1/1524-1399    GGCGGGGGCGGGGG---CGGAGGGAGGGCGGUGAGGGCGCGGCCUGGGUCACGUGACGGGAUUUCAGUGUUUACAUUCG-GAGCGGGACA--AGCCCACGGC-------UCUGUCCGC----CCGCUCGGGUCCCUUUCGGUU
AF251350.1/122-250           GGCGGGGCCGAGGGG--CUGAGCCCGCUGGGGGAGGGAACAGCGUUGAUCACGUGACGUGGUUUCAGUGUUUACACGCGCGAGCGGGCCG-GAGGGUUCGGC-------CUCAGUCAG----GCGCUCAGCUCUGUUUCGGGU
AY007232.1/88-215            GGCGGAGCGGAGAGG-GCGGGG-CCAAAGG--GGAGGGGCUGCGCGGGUCACGUGACAUCGUUUGACUGUUUACAGGAG-GCGCAG-CGG--AGCCCUUGGCCU---CAGUCAGUCAG----GCGCUGGGGAGCGUUUCGGUU
AAGW02055954.1/121539-121665 GGCGGGGCCGAGGGG-GCCGAACCC-GCGGGGGGAGGGGCGGUGUCGGUCACGUGACUCGGUUUCACUGUUUACACGCG-GAGCGGGCCG--AGCUUUCAGC-------CUCAAUCAG----GCGCUCGGCUCCGUUUCGGUU
AAPE02015618.1/27884-27758   GGCGGGGAUGAGGG--GCCGAACCCUGGGGGGGGAGGGGCGGUAGCGAUCACGUGACGCGGUUUCACUGUUUACACGCG-GAACGGCCGG--AGCGUUUGGC-------CUCAGUCAG----UCGUUGGGCUCCGUUUCGGUU
AF251348.1/124-249           GGCGGGACCGUGGGG--CCAAGCCC-GCGGGGGGAGGGGCGGUGUCGGUCACGUGACGCGGUUUCACUGUUUACACGCG-GAGCGGUCGG--AGCUUUCGGC-------CUCAGUCAG----GCGCUCGGCACCGUUUCGGUU
AY630337.1/384-512           GGCGGAGCGAAGGGG-GCGGAG-CCCAUGG-GGGAGGGGCCGCCAGGGUCACGUGGUGUCGUUUGACUGUUUACAGGAG-GCGCGG-CAG--AGCCCUCGGC-------CUCAGUCAGUCUUGCGCUGGGGAGCGUUUCGGUU
AY630338.1/535-662           GGCGGAGCGGAGAGG-GCGGGG-CCAAAGG--GGAGGGGCUGCGCGGGUCACGUGACAUCGUUUGACUGUUUACAGGAG-GCGCGG-CGG--AGCCCUUGGCCU---CAGUCAGUCAG----GCGCUGGGGAGCGUUUCGGUU
#=GC SS_cons                 :::::::::::::::..::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::..::::::::::.......:::::::::....:::::::::::::::::::::
#=GC RF                      GGCGGGGCcGaGGGG..CuGAGcccgggGGGGGgaGGgGCgGCgugGGUCACGUGACGuGGUUUcAgUGUUUACAcgcG.GaGCGGgccg..aGcguuCGGC.......cUCAGUCAG....GCGCUcgGcUCCGUUUCGGUU
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