# STOCKHOLM 1.0
#=GF ID DLEU2_1
#=GF AC RF02105
#=GF DE Deleted in lymphocytic leukemia 2 conserved region 1
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 52.0
#=GF NC 51.9
#=GF TC 52.1
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 41.46 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 9395242
#=GF RT Cloning of two candidate tumor suppressor genes within a 10 kb region on
#=GF RT chromosome 13q14, frequently deleted in chronic lymphocytic leukemia.
#=GF RA Liu Y, Corcoran M, Rasool O, Ivanova G, Ibbotson R, Grander D, Iyengar A,
#=GF RA Baranova A, Kashuba V, Merup M, Wu X, Gardiner A, Mullenbach R, Poltaraus
#=GF RA A, Hultstrom AL, Juliusson G, Chapman R, Tiller M, Cotter F, Gahrton G,
#=GF RA Yankovsky N, Zabarovsky E, Einhorn S, Oscier D
#=GF RL Oncogene. 1997;15:2463-2473.
#=GF WK DLEU2
#=GF SQ 27

AY455757.1/890-771           ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-AGGUCAUU---UUUUUU-UCCUUUUUGAUAGUAUUCAA-UGA-GAAA-UAACACUUUA--AAUAAAACUUU--UUC---C-AUGA-G-GAA-GGUACAGUAAU-------UAUCCAC
AL137060.13/38108-38227      ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-AGGUCAUU---UUUUUU-UCCUUUUUGAUAGUAUUCAA-UGA-GAAA-UAACACUUUA--AAUAAAACUUU--UUC---C-AUGA-G-GAA-GGUACAGUAAU-------UAUCCAC
AL109925.11/127996-128115    ACUAGAGCCAAA-UCUG-UCUCAAAAGUUU-AGGUCAUU---UUUUUU-UCCUUUUUGAUAGUAUUCAA-CGA-GAAA-UAACACUUUA--AAUAAAACUUU--UUC---C-AUGA-G-GAA-GGUACAGUAAU-------UAUCCAC
AF279660.2/47646-47765       ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-AGGUCAUU---UUUUUU-UCCUUUUUGAUAGUAUUCAA-UGA-GAAA-UAACACUUUA--AAUAAAACUUU--UUC---C-AUGA-G-GAA-GGUACAGUAAU-------UAUCCAC
AF380424.1/780-661           CCUAGAGCCAAA-UCUA-UCUCAAAAGUUU-AGGUCAUU---UUUUUU-UCCUUUUUGAUAGUAUUCAA-UGA-GAAA-UAACACUUUA--AAUAAAACUUU--UUC---C-AUGA-G-GAA-GGUACAGUAAU-------UAUCCAC
AAWR02010526.1/29031-28911   ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-AGGACAUUAA-UUUUUC-UCCUUUUUGUUAAUACUCAA-CGA-GAAA-CAACACUUAG--AAUACAACUUU--UUC---C-AUGA-A-UAA-GGGAUAGUAAU--------AUCCAC
AAQQ01600879.1/4109-3989     ACUAUUGCCAAA-UCUA-UCUCAAAAAUUU-AGGACAAUAA-UUUUUC-UCCUUUUUGAUAAUACUCAA-UGA-GAAA-CAACACUUAG--AAUAAAACAUU--UUC---C-AUGA-G-GAA-GGGAUAGUAAU--------AUCCAC
ABRR01275135.1/2340-2220     ACUAGAGCCAAA-ACUA-UCUCAAAAGUUU-AGGGCAUUAG-UUUUUC-UCCUUUUUGAUAAUAUUCAA-UGA-GAAA-UGACACUUAG--AAUAUAACCUU--UUC---C-AUGG-A-UAA-GGAUUAGUAAU--------AUCCAC
ABRT010133259.1/11603-11725  ACUAGAGCCAAAAUCUA-UCUCAAAAGUUU-AGAAUAUUAA-UCUUUC-UCCUUUUAAAUAAUAUUCAA-UAA-GAAA-UAACAUUUAG--AAUAAAACUUU--UUC---C-AUGA-G-GAA-GGAAUAGUAAU-------UAUCCAC
ABVD01299549.1/2864-2740     ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-AGAACAUUCA-UUUUUC-UCUCUUUUGUUAAUAUUCAA-UAA-GAAAACAACAUUUAA--AAUAAAACUUU--UUUUUCC-AUGA-G-GAA-GGGAUGGUAAU--------AUCCAC
AAFC03089645.1/13318-13197   ACUACAGCCAAA-UCUAAUCUCAAAAGAUU-AGGAUAUUAA-UUUUUC-UCCUUUUUGCUAAUACUCAA-UGA-AAAA-CAACACUUAG--CAUAAAACUUU--UUC---C-AUGA-A-UAA-GGGCUAGUAAU--------AUCCAC
ABRO01260383.1/790-668       AUUAGUAUCAGA-CCUA-UCUCAAAUGGUU-AGGUCAUUAAUUUUUUC-ACCAUUCUGAUAAUGCUCAA-AGA-GAAA-UAACACUUAA-GAAUAAAACUUU--UUC---C-AUGA-G-GUA-CAGAUAGUAAU--------AUCCAC
AAGV020165561.1/804-689      UCUACAGCCAAC-UCUA-CCUCAAAAAUUU-AGGACAUUAA-CUUUUC-UCCCUCUCGUUAAUAUUCAA-UGC-GAAA-CAACACUUA-------AAACAUU--UUC---C-AUGA-G-GAA-GGGAUGGUUAU--------AUCCAC
ABRQ01105896.1/3360-3246     ACUAGA-UCAAA-UCUA-UCUUAAUAGUUU-AGGACAUUAA-UUUUUC-UCCU--UUGCU---AUUAAA-UGA-GAAA-UACUGCUCAG--AAUAAAAUGUU--UUU---C-ACGG-U-GAA-GGGAUGGCAAU--------AUCCAC
AAPY01631686.1/5136-5020     ACUAGA-CCAAA-UCUA-UCUCAAAAGUUUUAAGACAUUAA-UUUUUC-U-UCUUUUGAUAACAUUCAA-UGA-GG----AACAUUUAA-AAAUAAGACUUU--UUU---C-AUGA-G--AA-GAGAUAGUAAU--------AUCCAC
AAKN02011211.1/24815-24923   AUUACAGCCAAG-UCUA-UCUAAAAAUUUU-AGAACAUUAA-UUUUUC-UCCUUUUUAAUAUUAUUUAA-UGA-GA-----ACACUUA-------AAACUUU--UUC---C-AUGA-----A-GGGAAAGUAAU--------AUCCAC
AAYZ01277512.1/47-168        ACUAGAACCAAA-UAUA-ACUUAAAAAUUA-AGGCAACCA--CUUUUC-UCCCUUUUUAUAAUACUCAAAUGA-GAAA-UAAAAUUUCGGAAUUAAGACUUU--UUC---C-AUCA-G--AA-GAGACAGUAAU--------AUCCAC
CAAA01192847.1/9232-9118     UGCUGAUCCAAA-UCUA-UUUAAAACAAUUAAGGACAUU---UUCUUU-UCUUUUUGGAUGGUAUUUAA-UGA-GAAA-CAACACUGAG--A---AAAAAUA--UAU---C-AUAC-----A-AGGAUAGUAAU-------AUUCCUU
ABVD01171437.1/671-795       CUUAGAGCCAAA-UAUA-UCUCAGAAGUUU-AUAACAUUCA-UUUUUCUCUCUUUUUGUUAAUAUUCAA-UAG-GAAAACAACACUUAA--AAUAAACCUUUUUUUC---C-ACGA-G-GAA-GAGAUGGUAAU--------AACCAU
ABVD01873795.1/989-873       ACUAGAGCCAAA-UCUA-UCUCAGAAAUUU-AGAACAUUCA-UUUUUC-UCUAUUUUGUUAAUGUUCAA-UGA-GAAAACAACACUUA-------AAACUUU--UUC---C-AUGA-A-GAA-GGGAUGGUAAU--------AUCCAC
ABRP01205680.1/2705-2590     UCUAGAGC-AAU-UUUA-UAUCAAAUUUAU-AAGAUAUAA--AUGUUC-UCUUUAUUAAU---AUUUAG-UGA-GAAAUGAACACUCCA--GAUAAAACAUU--UUU---C-AUGU-A-GAA--GGAUGGUAAU--------AUAAAC
AACN010177803.1/1143-1022    ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-GGGACAUUAA-UUUUUC-UCCUUUCUGUCAAUACUCAA-UGA-GAAAUUAACACUUAG--AAUAAAACGUU--UUC---G-AUGA-A-UAA-AGGAUAGUAAU--------AUCCAC
AAQR03165218.1/6758-6639     ACUAGAGACAAA-UCUA-UCUCAAAAGUUU-AAAACACUAA-UUUUUC-UCCUUUUUGAUAAUAUUCAA-GGA-GAUA-UAACAAUUAG-AA--AAAACUUU--UUC---C-AUGA-G-GAA-GGGAUAGUAAU--------AUCCAC
AAGW02061188.1/108033-108155 AAUAAAUCUUAA-AAAA-AAAAAAAAUUUU-AAGGCAGUAU-UUUUAU-UCCAUUUUCAUAUUAUUCAA-CGACAAAA-CAAGACUCAG-AAUUAAAACUUU--UUC---C-ACAA-G-GAA-GAAACAGUAAU--------AUCCAC
AAGW02046027.1/82376-82257   ACUGAAGCCAAA-UCUA-GCUAAAAAGUUC-AAUACAAU---UUUUAU-CCUUUUUUCAUAAUAUUCAA-UGA-GAAA-UAACACUUAG-GAAUAAAACAUU--UUC---G-AUGA-G-GAA-GAAAUAGUA-U-------CAUCCAC
AAEX03016987.1/215466-215344 ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-GGGAUAUUAA-UUUUUC-U-----UUGUUAAUAUUAAA-UGA-GAAAUGAACACUUAG--AAUAAAACUUU--UUCG-G-GACGCC-UGAGUGGCUCAGUGGUUGAACGUC------
Y15228.1/521-403             ACUAGAGCCAAA-UCUA-UCUCAAAAGUUU-AGGUCAUU---UUUUUU-UCCUUUUUGAUAGUAUUCAA-UGA-GAAA-UAACACUUUA--AAUAAAACUUU--UUC---C-AUGA-G-G-A-GGUACAGUAAU-------UAUCCAC
#=GC SS_cons                 ::::::::::::.::::.::::::::::::.::::::::::.::::::.::::::::::::::::::::.:::.::::.::::::::::..:::::::::::..:::...:.::::.:.:::.:::::::::::........::::::
#=GC RF                      acUAGAGCCAAA.UcUA.uCUcAAAagUUU.AGGaCAuUAa.UUUUUC.UCCuUUUUgaUAaUAUUcAA.UGA.GAAA.uAACACUuag..AAUAAAACuUU..UUC...C.AUGa.g.GAA.GGgAuaGUAAU........AUCCAC
//
