# STOCKHOLM 1.0
#=GF ID tfoR
#=GF AC RF02100
#=GF DE Translational regulator of tfoXVC
#=GF AU Moore B; 0000-0002-4074-1933
#=GF GA 70.0
#=GF NC 59.5
#=GF TC 72.4
#=GF SE Published; PMID:21317321
#=GF SS Predicted; WAR
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 23.46 -Z 2958934 CM SEQDB
#=GF DR SO; 0005836; regulatory_region;
#=GF RN [1]
#=GF RM 21317321
#=GF RT Identification of a chitin-induced small RNA that regulates translation of
#=GF RT the tfoX gene, encoding a positive regulator of natural competence in
#=GF RT Vibrio cholerae.
#=GF RA Yamamoto S, Izumiya H, Mitobe J, Morita M, Arakawa E, Ohnishi M, Watanabe
#=GF RA H
#=GF RL J Bacteriol. 2011;193:1953-1965.
#=GF WK Sxy_5'_UTR_element
#=GF SQ 10

AAND01000024.1/44297-44397 AU---UCCAGAGGUGAUGUGGCUU-GCCAUAUCACUCCGGCAGCAAGCGAAGGUGUCAUUGGCACCCGUGGUAUAGUCCCCCCGGCUAUACCACGAUAUUUUUUU
ABCH01000040.1/28749-28650 AU---UCCAGAGGUGAUGUGGGUA-ACCGCAUCACUCCGGCAGCAAGCGAAGGUGUCAUUGGCACCCGCGGUAUGGUCCCCC-GGCUAUGCCGCGAAUUUUUUUU
ABGR01000010.1/15041-15138 UU---UCCAGAGAUGGCAUGGAAA---CAUGUCAAUC-GGCAGCAAGCGAAGGUGUCUUUUACACCCGUGGUACAGUCACCCCGGCCGUACCACGUUUUUUUAUU
ACCV01000112.1/51188-51285 AU---UCCAGAGGUGGCGCAUCCA----GCGUCACUCCGGCAGCAAGCGAAGGUGUCAUUGGCACCCGUGGUAUAGUCCCCCCGGCUAUACCACGAUAUUUUUUU
BA000031.2/890615-890517   AU---UCCAGAGGUGGCAUGGCAA---CAUGUCACUCCGGCAGCAAGCGAAGGUGUCAUUGACACCCGUGGUAUAGUCCCCCCGGCUAUACCACGAUAUUUUUUU
CP000020.2/917861-917758   AUUCUAAUAGAAGUAACAAGAAGU-AUCUUGUUACUUCGGCAGCAAGCGAAGGCGUCUUUGGCGCCCGUGGCGUAGUCCCCCCGGCUACGUCACGAUCUUUUUUU
FM178379.1/2430470-2430367 AUUCUAUAAGAGGAAACAAGAGAA-AUCUUACUUCCUCGGCAGCAAGCGAAGGUGCCUUUGGUACCCGUGGCGUCGUCCCCCCGGCGACGCCACGAUCUUUUUUU
CP002555.1/2072018-2072119 AU---UCCAGAGGUGGUAUGACCAUGUCAUACCACUCCGGCAGCAAGCGAAGGUGUCGUUGACACCCGUGGUAUAGUCCCCCCGGCUAUACCACGAUAUUUUUUU
AE016795.3/135127-135228   AU---UCCAGAGGUGACGUGACGAUGUCGCGUCACUCCGGCAGCAAGCGAAGGUGUCAUUGACACCCGUGGUAUAGUCCCCCCGGCUAUACCACGAUAUUUUUUU
AB598400.1/1-102           AU---UCCAGAGGUGGUAUGACCAUGUCAUACCACUCCGGCAGCAAGCGAAGGUGUCGUUGACACCCGUGGUAUAGUCCCCCCGGCUAUACCACGAUAUUUUUUU
#=GC SS_cons               ::...::::::<<<<<<<<<<___._>>>>>>>>>>:::<<_____>>:::<<<<<<___>>>>>><<<<<<<<<<<<_____>>>>>>>>>>>>::::::::::
#=GC RF                    AU...uccAGAgguggcgcGgaaa.acCgcgccacccCGGCAGCAAGCGAAGGuGccaUUggCaCCCGuGGcgugGuCcCCCCGgCcacgCCaCGAUaUUUUuUU
//
