INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1662 ACC RF02097 DESC mir-1662 microRNA precursor STATES 202 NODES 45 CLEN 66 W 88 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 08:59:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02097/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.497070 CKSUM 2892928474 NULL 0.000 0.000 0.000 0.000 GA 85.00 TC 85.30 NC 84.90 EFP7GF -9.4807 0.71923 ECMLC 0.64804 -5.28788 3.64443 1600000 391838 0.003062 ECMGC 0.43367 -15.89149 -2.32586 1600000 143546 0.002787 ECMLI 0.61862 -4.31000 4.68288 1600000 312781 0.003837 ECMGI 0.45238 -11.44059 0.68696 1600000 96541 0.004143 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 88 116 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 IL 1 1 2 1 6 1 7 90 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 8 89 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 69 U A - - MP 3 2 3 7 6 2 12 88 116 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.843 -3.654 -3.718 0.024 -2.738 -4.313 1.581 -3.408 -3.727 0.338 -4.117 -1.563 3.131 -4.006 -0.423 -2.583 ML 4 2 3 7 6 1 5 87 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 5 86 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 1 84 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 7 88 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 7 87 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 68 G C - - MP 9 8 6 13 6 2 12 86 114 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 10 8 6 13 6 1 5 85 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 5 84 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 1 82 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 86 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 85 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 67 G C - - MP 15 14 6 19 6 2 11 84 112 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 16 14 6 19 6 1 5 83 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 5 82 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 80 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 84 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 83 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 66 G C - - MP 21 20 6 25 6 2 11 82 110 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 22 20 6 25 6 1 4 81 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 80 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 78 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 6 82 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 6 81 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 65 c g - - MP 27 26 6 31 6 2 10 80 108 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.529 -3.482 -3.401 0.183 -2.361 -3.952 2.841 -3.074 -3.427 0.440 -3.805 -1.528 1.258 -3.665 1.328 -2.317 ML 28 26 6 31 6 1 4 79 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 78 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 76 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 80 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 6 79 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 64 u g - - MP 33 32 6 37 6 2 10 78 106 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.744 -3.649 -3.525 -0.019 -2.397 -4.009 1.879 -3.134 -3.562 0.236 -3.891 -1.661 1.082 -3.861 2.747 -2.452 ML 34 32 6 37 6 1 4 77 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 4 76 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 74 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 78 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 77 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 63 u a - - MP 39 38 6 43 6 2 9 76 104 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -2.764 -2.699 -2.845 0.709 -2.387 -3.618 1.677 -2.886 -2.879 0.998 -3.380 -0.842 2.393 -3.020 -0.221 0.379 ML 40 38 6 43 6 1 3 75 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 74 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 72 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 76 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 75 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 62 G C - - MP 45 44 6 49 6 2 9 74 102 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 46 44 6 49 6 1 3 73 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 72 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 70 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 4 74 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 73 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 61 A U - - MP 51 50 6 55 6 2 9 72 100 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.518 -2.623 -3.554 3.118 -3.758 -4.800 0.525 -3.612 -3.459 1.376 -3.993 -0.148 0.106 -4.032 -1.418 -2.406 ML 52 50 6 55 6 1 3 71 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 70 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 68 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 72 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 4 71 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 60 C G - - MP 57 56 6 61 6 2 8 70 98 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 58 56 6 61 6 1 3 69 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 68 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 66 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 4 70 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 4 69 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 59 A U - - MP 63 62 6 67 6 2 8 68 96 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.518 -2.623 -3.554 3.118 -3.758 -4.800 0.525 -3.612 -3.459 1.376 -3.993 -0.148 0.106 -4.032 -1.418 -2.406 ML 64 62 6 67 6 1 2 67 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 66 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 64 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 3 68 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 67 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 58 U A - - MP 69 68 6 73 6 2 7 66 94 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.843 -3.654 -3.718 0.024 -2.738 -4.313 1.581 -3.408 -3.727 0.338 -4.117 -1.563 3.131 -4.006 -0.423 -2.583 ML 70 68 6 73 6 1 2 65 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 65 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 62 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 3 66 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 66 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 57 C G - - MP 75 74 6 79 6 2 5 64 92 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 76 74 6 79 6 1 2 63 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 63 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 61 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 64 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 2 64 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 56 A U - - MP 81 80 6 85 4 2 3 62 90 -6.759 -6.966 -0.061 -5.380 -3.518 -2.623 -3.554 3.118 -3.758 -4.800 0.525 -3.612 -3.459 1.376 -3.993 -0.148 0.106 -4.032 -1.418 -2.406 ML 82 80 6 85 4 1 1 62 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 61 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 60 88 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 2 63 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 2 62 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 87 86 6 89 3 1 2 60 88 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 88 86 6 89 3 0 0 59 87 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 61 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 55 - c - - MR 90 89 3 92 5 1 2 59 87 -6.942 -0.043 -6.758 -6.970 -7.861 -0.612 0.683 -1.387 0.441 D 91 89 3 92 5 0 0 58 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 59 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 54 C G - - MP 93 92 3 97 4 2 2 58 86 -6.759 -6.966 -0.061 -5.380 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 94 92 3 97 4 1 1 58 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 4 1 1 57 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 3 97 4 0 0 56 84 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 59 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 58 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - a - - - ML 99 98 6 101 3 1 1 56 84 -7.790 -0.023 -6.444 0.839 -0.145 -0.988 -0.318 D 100 98 6 101 3 0 0 54 82 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 57 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 102 101 3 104 3 1 1 55 83 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 103 101 3 104 3 0 0 53 81 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 56 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - A - - - ML 105 104 3 107 3 1 1 54 82 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 106 104 3 107 3 0 0 53 80 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 55 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 53 - G - - MR 108 107 3 110 3 1 1 53 81 -8.192 -0.021 -6.510 -1.208 -2.365 1.621 -1.750 D 109 107 3 110 3 0 0 51 79 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 54 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 52 - A - - MR 111 110 3 113 3 1 1 52 80 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 112 110 3 113 3 0 0 50 78 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 53 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 51 - c - - MR 114 113 3 116 5 1 1 51 79 -6.942 -0.043 -6.758 -6.970 -7.861 -0.612 0.683 -1.387 0.441 D 115 113 3 116 5 0 0 50 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 51 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 50 C G - - MP 117 116 3 121 6 2 2 50 78 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 118 116 3 121 6 1 1 48 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 48 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 45 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 50 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 49 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 49 U A - - MP 123 122 6 127 6 2 2 48 76 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.843 -3.654 -3.718 0.024 -2.738 -4.313 1.581 -3.408 -3.727 0.338 -4.117 -1.563 3.131 -4.006 -0.423 -2.583 ML 124 122 6 127 6 1 1 46 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 46 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 43 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 48 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 47 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 48 U A - - MP 129 128 6 133 6 2 2 46 74 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.843 -3.654 -3.718 0.024 -2.738 -4.313 1.581 -3.408 -3.727 0.338 -4.117 -1.563 3.131 -4.006 -0.423 -2.583 ML 130 128 6 133 6 1 1 44 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 44 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 41 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 46 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 45 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 47 G C - - MP 135 134 6 139 6 2 2 44 72 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 136 134 6 139 6 1 1 42 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 42 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 39 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 44 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 43 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 46 G C - - MP 141 140 6 145 6 2 2 42 70 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.393 0.262 -3.461 0.972 -3.828 -4.070 0.379 -3.803 -3.439 3.074 -3.865 -0.203 0.101 -3.460 -1.497 -2.451 ML 142 140 6 145 6 1 1 40 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 40 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 38 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 42 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 41 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 45 G C - - MP 147 146 6 151 6 2 2 40 68 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 148 146 6 151 6 1 1 39 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 38 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 36 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 40 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 39 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 44 A U - - MP 153 152 6 157 6 2 2 38 66 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.518 -2.623 -3.554 3.118 -3.758 -4.800 0.525 -3.612 -3.459 1.376 -3.993 -0.148 0.106 -4.032 -1.418 -2.406 ML 154 152 6 157 6 1 1 37 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 37 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 34 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 38 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 37 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 43 u g - - MP 159 158 6 163 4 2 2 36 64 -6.759 -6.966 -0.061 -5.380 -3.744 -3.649 -3.525 -0.019 -2.397 -4.009 1.879 -3.134 -3.562 0.236 -3.891 -1.661 1.082 -3.861 2.747 -2.452 ML 160 158 6 163 4 1 1 36 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 35 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 34 62 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 37 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 36 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - G - - - ML 165 164 6 167 3 1 1 34 62 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 166 164 6 167 3 0 0 32 60 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 35 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - U - - - ML 168 167 3 170 3 1 1 33 61 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 169 167 3 170 3 0 0 31 58 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 34 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - A - - - ML 171 170 3 173 3 1 1 32 60 -2.636 -0.273 -6.444 1.632 -2.023 -1.690 -1.533 D 172 170 3 173 3 0 0 27 55 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 34 62 -0.958 -1.132 -5.117 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - - - ML 174 173 3 176 3 1 1 22 41 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - g - - - ML 177 176 3 179 3 1 1 21 40 -7.790 -0.023 -6.444 0.376 -1.336 0.770 -0.735 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 180 179 3 182 3 1 1 20 39 -7.790 -0.023 -6.444 1.632 -2.023 -1.690 -1.533 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - c - - - ML 183 182 3 185 3 1 1 19 38 -7.790 -0.023 -6.444 -0.612 0.683 -1.387 0.441 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - a - - - ML 186 185 3 188 3 1 1 18 36 -7.790 -0.023 -6.444 0.921 -1.248 0.080 -0.670 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - C - - - ML 189 188 3 191 3 1 1 16 35 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - a - - - ML 192 191 3 194 3 1 1 15 33 -7.790 -0.023 -6.444 0.965 -1.256 0.009 -0.683 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - A - - - ML 195 194 3 197 3 1 1 13 32 -7.790 -0.023 -6.444 1.632 -2.023 -1.690 -1.533 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - A - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 1.632 -2.023 -1.690 -1.533 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1662 ACC RF02097 DESC mir-1662 microRNA precursor LENG 66 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 08:59:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 3 EFFN 2.329102 CKSUM 2892928474 STATS LOCAL MSV -8.0491 0.71923 STATS LOCAL VITERBI -8.9362 0.71923 STATS LOCAL FORWARD -3.3877 0.71923 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38898 1.44576 1.31425 1.40068 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 0.00000 * 1 2.99496 1.89960 2.72630 0.30806 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 2 2.59329 3.24797 0.16803 3.19307 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 3 2.58868 3.24251 0.16906 3.18543 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 4 2.58587 3.23919 0.16970 3.18078 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 5 2.66880 0.66406 2.44000 1.11247 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 6 2.93726 1.57357 2.72621 0.39420 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 7 2.19193 1.56832 1.95532 0.61918 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 8 2.58112 3.23357 0.17077 3.17295 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 9 0.34455 2.76434 1.82653 2.69603 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 10 3.18708 0.24212 2.96263 2.10321 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 11 0.34469 2.76383 1.82644 2.69530 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 12 2.95959 1.89775 2.71091 0.31228 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 13 3.18521 0.24233 2.96174 2.10289 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 14 0.34481 2.76338 1.82636 2.69464 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 15 2.60453 2.56942 3.12172 0.21641 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 16 3.18660 0.24217 2.96240 2.10313 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 17 0.72644 1.45349 2.22178 1.74752 17 a - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 18 2.60453 2.56942 3.12172 0.21641 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 19 0.15592 3.23352 2.95816 2.93678 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 20 3.18741 0.24208 2.96279 2.10327 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 21 2.96308 1.89793 2.71244 0.31185 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 22 2.96344 1.89795 2.71260 0.31181 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 23 2.58161 3.23414 0.17066 3.17376 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 24 1.53382 2.68969 0.44859 2.55286 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 25 2.58074 3.23312 0.17086 3.17233 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 26 0.34459 2.76419 1.82651 2.69582 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 27 2.93289 1.57363 2.72419 0.39472 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 28 2.69438 3.57144 0.14929 3.14695 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 29 2.60453 2.56942 3.12172 0.21641 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 30 0.15592 3.23352 2.95816 2.93678 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.26328 1.55789 3.86847 1.12579 0.39215 1.09861 0.40547 31 2.60453 2.56942 3.12172 0.21641 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 32 1.12310 2.52162 0.74703 2.11501 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 33 0.15592 3.23352 2.95816 2.93678 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 34 2.00577 0.79735 2.57031 1.08349 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 35 0.67566 2.44410 1.28715 2.05323 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 36 2.83933 0.20280 3.41530 2.38349 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 37 0.64217 2.45180 1.34382 2.06461 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 38 0.15592 3.23352 2.95816 2.93678 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 39 0.15592 3.23352 2.95816 2.93678 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 40 2.11418 2.90125 0.28038 2.67631 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 41 2.92200 2.11980 2.57608 0.28762 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 42 3.37533 0.20210 3.06800 2.28020 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 43 2.78358 0.36734 2.50326 1.80916 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 44 3.37992 0.20168 3.07002 2.28108 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 45 0.35352 2.89821 1.73500 2.71410 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 46 0.35324 2.89949 1.73513 2.71565 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 47 2.38603 3.13813 0.20745 2.95674 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 48 2.00577 0.79735 2.57031 1.08349 51 c - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 49 0.15592 3.23352 2.95816 2.93678 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 50 2.69438 3.57144 0.14929 3.14695 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 51 2.38592 3.13798 0.20748 2.95656 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 52 2.00577 0.79735 2.57031 1.08349 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 53 2.91942 2.11949 2.57511 0.28795 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 54 2.37909 3.12869 0.20948 2.94534 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 55 0.35432 2.89456 1.73465 2.70963 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 56 2.92078 2.11965 2.57563 0.28778 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 57 2.37993 3.12983 0.20923 2.94671 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 58 2.92231 2.11984 2.57620 0.28758 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 59 3.37606 0.20203 3.06832 2.28034 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 60 0.93227 2.12966 1.39648 1.42714 63 a - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 61 2.11597 2.90391 0.27962 2.67939 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 62 1.92212 2.60305 0.36840 2.43256 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 63 3.39136 0.20065 3.07502 2.28324 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 64 3.39981 0.19990 3.07870 2.28483 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 65 3.41269 0.19877 3.08426 2.28722 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.04268 3.86847 3.86847 1.46634 0.26236 1.09861 0.40547 66 0.35043 2.91249 1.73639 2.73159 69 A - - > 1.38629 1.38629 1.38629 1.38629 0.02157 3.84736 * 1.46634 0.26236 0.00000 * //