INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1662 ACC RF02097 DESC mir-1662 microRNA precursor STATES 202 NODES 45 CLEN 66 W 88 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 25 13:24:59 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.5/mirnas/old_mirna_checkouts/RF02097/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.502930 CKSUM 2892928474 NULL 0.000 0.000 0.000 0.000 GA 85.00 TC 90.50 NC 84.50 EFP7GF -9.5014 0.71921 ECMLC 0.64788 -5.29077 3.64762 1600000 392823 0.003055 ECMGC 0.43209 -15.94801 -2.33167 1600000 143632 0.002785 ECMLI 0.61955 -4.29780 4.68497 1600000 313423 0.003829 ECMGI 0.45240 -11.44415 0.68788 1600000 96758 0.004134 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 88 117 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 IL 1 1 2 1 6 1 7 90 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 8 90 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 69 U A - - MP 3 2 3 7 6 2 12 89 117 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.847 -3.658 -3.722 0.020 -2.741 -4.317 1.578 -3.411 -3.731 0.332 -4.121 -1.568 3.134 -4.010 -0.426 -2.586 ML 4 2 3 7 6 1 5 87 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 5 87 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 1 84 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 7 88 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 7 88 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 68 G C - - MP 9 8 6 13 6 2 12 87 115 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.409 -2.937 -4.484 0.416 -4.764 -4.559 -0.209 -4.698 -4.102 3.547 -4.464 -0.626 -0.605 -4.248 -2.230 -3.366 ML 10 8 6 13 6 1 5 85 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 5 85 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 1 82 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 86 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 86 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 67 G C - - MP 15 14 6 19 6 2 11 85 113 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.409 -2.937 -4.484 0.416 -4.764 -4.559 -0.209 -4.698 -4.102 3.547 -4.464 -0.626 -0.605 -4.248 -2.230 -3.366 ML 16 14 6 19 6 1 5 83 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 5 83 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 80 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 84 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 84 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 66 G C - - MP 21 20 6 25 6 2 11 83 111 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.409 -2.937 -4.484 0.416 -4.764 -4.559 -0.209 -4.698 -4.102 3.547 -4.464 -0.626 -0.605 -4.248 -2.230 -3.366 ML 22 20 6 25 6 1 4 81 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 81 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 78 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 6 82 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 6 82 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 65 c g - - MP 27 26 6 31 6 2 10 81 109 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.536 -3.488 -3.407 0.179 -2.364 -3.957 2.852 -3.077 -3.432 0.436 -3.810 -1.533 1.255 -3.671 1.305 -2.321 ML 28 26 6 31 6 1 4 79 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 79 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 76 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 80 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 6 80 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 64 u g - - MP 33 32 6 37 6 2 10 79 107 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.749 -3.654 -3.529 -0.024 -2.399 -4.012 1.877 -3.137 -3.566 0.230 -3.894 -1.666 1.080 -3.865 2.751 -2.455 ML 34 32 6 37 6 1 4 77 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 4 77 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 74 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 78 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 78 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 63 u a - - MP 39 38 6 43 6 2 9 77 105 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -2.750 -2.685 -2.831 0.720 -2.376 -3.603 1.683 -2.874 -2.866 1.007 -3.367 -0.830 2.356 -3.006 -0.212 0.456 ML 40 38 6 43 6 1 3 75 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 75 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 72 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 76 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 76 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 62 G C - - MP 45 44 6 49 6 2 9 75 103 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.409 -2.937 -4.484 0.416 -4.764 -4.559 -0.209 -4.698 -4.102 3.547 -4.464 -0.626 -0.605 -4.248 -2.230 -3.366 ML 46 44 6 49 6 1 3 73 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 73 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 70 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 4 74 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 74 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 61 A U - - MP 51 50 6 55 6 2 9 73 101 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.521 -2.626 -3.557 3.122 -3.764 -4.805 0.520 -3.615 -3.463 1.372 -3.996 -0.149 0.101 -4.037 -1.423 -2.409 ML 52 50 6 55 6 1 3 71 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 71 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 68 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 72 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 4 72 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 60 C G - - MP 57 56 6 61 6 2 8 71 99 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.208 -4.080 -3.953 -0.347 -2.752 -4.409 3.429 -3.527 -3.993 -0.051 -4.289 -2.024 0.794 -4.298 -0.452 -2.846 ML 58 56 6 61 6 1 3 69 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 69 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 66 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 4 70 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 4 70 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 59 A U - - MP 63 62 6 67 6 2 8 69 97 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.521 -2.626 -3.557 3.122 -3.764 -4.805 0.520 -3.615 -3.463 1.372 -3.996 -0.149 0.101 -4.037 -1.423 -2.409 ML 64 62 6 67 6 1 2 67 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 67 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 64 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 3 68 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 68 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 58 U A - - MP 69 68 6 73 6 2 7 67 95 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.847 -3.658 -3.722 0.020 -2.741 -4.317 1.578 -3.411 -3.731 0.332 -4.121 -1.568 3.134 -4.010 -0.426 -2.586 ML 70 68 6 73 6 1 2 65 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 65 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 62 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 3 66 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 66 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 57 C G - - MP 75 74 6 79 6 2 5 65 93 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.208 -4.080 -3.953 -0.347 -2.752 -4.409 3.429 -3.527 -3.993 -0.051 -4.289 -2.024 0.794 -4.298 -0.452 -2.846 ML 76 74 6 79 6 1 2 63 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 63 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 61 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 64 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 2 64 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 56 A U - - MP 81 80 6 85 4 2 3 63 91 -6.762 -6.969 -0.061 -5.383 -3.521 -2.626 -3.557 3.122 -3.764 -4.805 0.520 -3.615 -3.463 1.372 -3.996 -0.149 0.101 -4.037 -1.423 -2.409 ML 82 80 6 85 4 1 1 62 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 62 90 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 60 89 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 2 63 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 2 63 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 87 86 6 89 3 1 2 60 89 -8.195 -0.021 -6.512 -1.175 -1.228 -1.891 1.516 D 88 86 6 89 3 0 0 59 87 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 61 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 55 - c - - MR 90 89 3 92 5 1 2 59 88 -6.944 -0.043 -6.760 -6.972 -7.864 -0.605 0.650 -1.379 0.474 D 91 89 3 92 5 0 0 58 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 60 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 54 C G - - MP 93 92 3 97 4 2 2 58 87 -6.762 -6.969 -0.061 -5.383 -4.208 -4.080 -3.953 -0.347 -2.752 -4.409 3.429 -3.527 -3.993 -0.051 -4.289 -2.024 0.794 -4.298 -0.452 -2.846 ML 94 92 3 97 4 1 1 58 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 4 1 1 57 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 3 97 4 0 0 56 84 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 59 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 59 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - a - - - ML 99 98 6 101 3 1 1 56 84 -7.792 -0.023 -6.446 0.810 -0.101 -0.987 -0.305 D 100 98 6 101 3 0 0 55 83 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 57 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 102 101 3 104 3 1 1 55 83 -7.792 -0.023 -6.446 -1.175 -1.228 -1.891 1.516 D 103 101 3 104 3 0 0 54 82 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 56 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - A - - - ML 105 104 3 107 3 1 1 54 82 -8.195 -0.021 -6.512 1.633 -2.028 -1.694 -1.538 D 106 104 3 107 3 0 0 53 81 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 55 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 53 - G - - MR 108 107 3 110 3 1 1 53 81 -8.195 -0.021 -6.512 -1.213 -2.371 1.623 -1.756 D 109 107 3 110 3 0 0 52 80 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 54 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 52 - A - - MR 111 110 3 113 3 1 1 52 80 -8.195 -0.021 -6.512 1.633 -2.028 -1.694 -1.538 D 112 110 3 113 3 0 0 51 79 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 53 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 51 - c - - MR 114 113 3 116 5 1 1 51 79 -6.944 -0.043 -6.760 -6.972 -7.864 -0.605 0.650 -1.379 0.474 D 115 113 3 116 5 0 0 50 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 52 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 50 C G - - MP 117 116 3 121 6 2 2 50 78 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.208 -4.080 -3.953 -0.347 -2.752 -4.409 3.429 -3.527 -3.993 -0.051 -4.289 -2.024 0.794 -4.298 -0.452 -2.846 ML 118 116 3 121 6 1 1 49 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 49 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 46 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 50 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 50 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 49 U A - - MP 123 122 6 127 6 2 2 48 76 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.847 -3.658 -3.722 0.020 -2.741 -4.317 1.578 -3.411 -3.731 0.332 -4.121 -1.568 3.134 -4.010 -0.426 -2.586 ML 124 122 6 127 6 1 1 47 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 47 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 44 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 48 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 48 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 48 U A - - MP 129 128 6 133 6 2 2 46 74 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.847 -3.658 -3.722 0.020 -2.741 -4.317 1.578 -3.411 -3.731 0.332 -4.121 -1.568 3.134 -4.010 -0.426 -2.586 ML 130 128 6 133 6 1 1 45 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 45 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 42 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 46 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 46 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 47 G C - - MP 135 134 6 139 6 2 2 44 72 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.409 -2.937 -4.484 0.416 -4.764 -4.559 -0.209 -4.698 -4.102 3.547 -4.464 -0.626 -0.605 -4.248 -2.230 -3.366 ML 136 134 6 139 6 1 1 43 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 43 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 40 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 44 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 44 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 46 G C - - MP 141 140 6 145 6 2 2 42 70 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.378 0.338 -3.448 0.979 -3.811 -4.066 0.389 -3.786 -3.424 3.056 -3.853 -0.196 0.110 -3.453 -1.486 -2.438 ML 142 140 6 145 6 1 1 41 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 41 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 38 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 42 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 42 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 45 G C - - MP 147 146 6 151 6 2 2 40 68 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -4.409 -2.937 -4.484 0.416 -4.764 -4.559 -0.209 -4.698 -4.102 3.547 -4.464 -0.626 -0.605 -4.248 -2.230 -3.366 ML 148 146 6 151 6 1 1 39 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 39 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 36 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 40 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 40 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 44 A U - - MP 153 152 6 157 6 2 2 38 67 -9.039 -8.978 -0.022 -7.755 -8.035 -8.430 -3.521 -2.626 -3.557 3.122 -3.764 -4.805 0.520 -3.615 -3.463 1.372 -3.996 -0.149 0.101 -4.037 -1.423 -2.409 ML 154 152 6 157 6 1 1 37 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 37 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 35 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 38 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 38 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 43 u g - - MP 159 158 6 163 4 2 2 36 65 -6.762 -6.969 -0.061 -5.383 -3.749 -3.654 -3.529 -0.024 -2.399 -4.012 1.877 -3.137 -3.566 0.230 -3.894 -1.666 1.080 -3.865 2.751 -2.455 ML 160 158 6 163 4 1 1 36 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 35 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 34 62 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 37 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 36 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - G - - - ML 165 164 6 167 3 1 1 34 62 -7.792 -0.023 -6.446 -1.213 -2.371 1.623 -1.756 D 166 164 6 167 3 0 0 32 60 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 35 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - U - - - ML 168 167 3 170 3 1 1 33 61 -7.792 -0.023 -6.446 -1.175 -1.228 -1.891 1.516 D 169 167 3 170 3 0 0 31 59 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 34 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - A - - - ML 171 170 3 173 3 1 1 32 60 -2.563 -0.287 -6.446 1.633 -2.028 -1.694 -1.538 D 172 170 3 173 3 0 0 28 56 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 34 62 -0.947 -1.142 -5.155 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - - - ML 174 173 3 176 3 1 1 22 41 -7.792 -0.023 -6.446 -1.175 -1.228 -1.891 1.516 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - g - - - ML 177 176 3 179 3 1 1 21 40 -7.792 -0.023 -6.446 0.415 -1.323 0.732 -0.723 D 178 176 3 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 180 179 3 182 3 1 1 20 39 -7.792 -0.023 -6.446 1.633 -2.028 -1.694 -1.538 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - c - - - ML 183 182 3 185 3 1 1 19 38 -7.792 -0.023 -6.446 -0.605 0.650 -1.379 0.474 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - a - - - ML 186 185 3 188 3 1 1 18 36 -7.792 -0.023 -6.446 0.893 -1.246 0.126 -0.666 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - C - - - ML 189 188 3 191 3 1 1 16 35 -7.792 -0.023 -6.446 -1.333 1.493 -2.139 -0.831 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - a - - - ML 192 191 3 194 3 1 1 15 33 -7.792 -0.023 -6.446 0.980 -1.262 -0.015 -0.690 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - A - - - ML 195 194 3 197 3 1 1 13 32 -7.792 -0.023 -6.446 1.633 -2.028 -1.694 -1.538 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - A - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 1.633 -2.028 -1.694 -1.538 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1662 ACC RF02097 DESC mir-1662 microRNA precursor LENG 66 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 25 13:24:59 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 3 EFFN 2.334961 CKSUM 2892928474 STATS LOCAL MSV -8.1126 0.71921 STATS LOCAL VITERBI -8.9277 0.71921 STATS LOCAL FORWARD -3.3824 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38902 1.44717 1.31493 1.39856 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 0.00000 * 1 2.99823 1.90196 2.72988 0.30704 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 2 2.59513 3.25091 0.16759 3.19597 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 3 2.59051 3.24543 0.16863 3.18831 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 4 2.58769 3.24209 0.16926 3.18366 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 5 2.67087 0.65612 2.44191 1.12408 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 6 2.93984 1.57495 2.72915 0.39329 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 7 2.18581 1.56242 1.94915 0.62439 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 8 2.58293 3.23646 0.17033 3.17580 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 9 0.34337 2.76778 1.82899 2.69933 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 10 3.18995 0.24142 2.96586 2.10541 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 11 0.34351 2.76727 1.82890 2.69860 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 12 2.96275 1.90010 2.71443 0.31126 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 13 3.18808 0.24162 2.96497 2.10509 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 14 0.34363 2.76681 1.82882 2.69794 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 15 2.60719 2.57163 3.12449 0.21581 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 16 3.18951 0.24146 2.96565 2.10534 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 17 0.74952 1.41751 2.21947 1.73487 17 a - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 18 2.60719 2.57163 3.12449 0.21581 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 19 0.15544 3.23636 2.96072 2.93991 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 20 3.19033 0.24137 2.96604 2.10548 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 21 2.96627 1.90029 2.71597 0.31083 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 22 2.96662 1.90031 2.71613 0.31079 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 23 2.58343 3.23704 0.17022 3.17662 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 24 1.50278 2.68269 0.46096 2.54552 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 25 2.58256 3.23601 0.17042 3.17518 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 26 0.34341 2.76763 1.82897 2.69912 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 27 2.93546 1.57501 2.72713 0.39381 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 28 2.69730 3.57476 0.14879 3.15027 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 29 2.60719 2.57163 3.12449 0.21581 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 30 0.15544 3.23636 2.96072 2.93991 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.27609 1.51237 3.86969 1.12451 0.39276 1.09861 0.40547 31 2.60719 2.57163 3.12449 0.21581 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 32 1.08910 2.50905 0.77658 2.10244 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 33 0.15544 3.23636 2.96072 2.93991 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 34 1.99719 0.82382 2.56012 1.05487 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 35 0.69789 2.44170 1.25020 2.04870 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 36 2.84277 0.20210 3.41878 2.38626 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 37 0.63051 2.45635 1.36328 2.07059 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 38 0.15544 3.23636 2.96072 2.93991 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 39 0.15544 3.23636 2.96072 2.93991 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 40 2.11590 2.90423 0.27966 2.67882 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 41 2.92525 2.12259 2.57949 0.28660 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 42 3.37805 0.20160 3.07095 2.28197 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 43 2.77604 0.37051 2.49596 1.80233 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 44 3.38266 0.20118 3.07297 2.28285 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 45 0.35235 2.90180 1.73736 2.71724 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 46 0.35207 2.90308 1.73748 2.71880 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 47 2.38828 3.14140 0.20683 2.95970 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 48 1.99719 0.82382 2.56012 1.05487 51 c - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 49 0.15544 3.23636 2.96072 2.93991 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 50 2.69730 3.57476 0.14879 3.15027 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 51 2.38817 3.14126 0.20686 2.95952 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 52 1.99719 0.82382 2.56012 1.05487 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 53 2.92266 2.12228 2.57852 0.28693 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 54 2.38132 3.13192 0.20886 2.94824 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 55 0.35315 2.89813 1.73699 2.71275 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 56 2.92403 2.12245 2.57903 0.28675 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 57 2.38215 3.13306 0.20862 2.94961 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 58 2.92556 2.12263 2.57961 0.28656 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 59 3.37877 0.20153 3.07126 2.28211 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 60 0.95828 2.12367 1.39053 1.39467 63 a - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 61 2.11769 2.90689 0.27890 2.68190 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 62 1.92333 2.60499 0.36768 2.43451 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 63 3.39411 0.20015 3.07798 2.28501 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 64 3.40258 0.19940 3.08167 2.28660 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 65 3.41549 0.19827 3.08726 2.28901 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86969 3.86969 1.46634 0.26236 1.09861 0.40547 66 0.34926 2.91614 1.73876 2.73478 69 A - - > 1.38629 1.38629 1.38629 1.38629 0.02154 3.84861 * 1.46634 0.26236 0.00000 * //