INFERNAL1/a [1.1.4 | Dec 2020] NAME CLRN1-AS1 ACC RF02089 DESC CLRN1 antisense RNA 1 conserved region STATES 241 NODES 81 CLEN 79 W 157 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:48:17 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 5.357666 CKSUM 3781449036 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 49.20 NC 43.70 EFP7GF -9.3095 0.71859 ECMLC 0.70231 -9.09598 -0.90701 1600000 377486 0.003179 ECMGC 0.39698 -17.05078 -5.22321 1600000 43774 0.009138 ECMLI 0.67091 -7.62399 0.50293 1600000 279988 0.004286 ECMGI 0.45997 -9.97314 -0.04248 1600000 38532 0.010381 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 157 239 -7.929 -8.136 -0.027 -6.550 IL 1 1 2 1 4 7 37 159 241 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 6 36 158 241 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 7 36 157 239 -6.240 -0.039 -6.240 -1.195 -0.432 -0.567 1.102 D 4 2 3 5 3 3 31 154 236 -11.551 -1.585 -0.585 IL 5 5 3 5 3 8 38 163 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 6 35 156 238 -6.240 -0.039 -6.240 0.906 -1.303 0.098 -0.620 D 7 5 3 8 3 2 31 153 235 -11.551 -1.585 -0.585 IL 8 8 3 8 3 8 37 162 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 6 34 154 237 -6.240 -0.039 -6.240 -1.262 -3.117 1.733 -2.800 D 10 8 3 11 3 2 30 151 233 -11.551 -1.585 -0.585 IL 11 11 3 11 3 7 36 161 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 5 34 153 235 -6.240 -0.039 -6.240 1.915 -3.914 -3.523 -3.726 D 13 11 3 14 3 1 29 150 232 -11.551 -1.585 -0.585 IL 14 14 3 14 3 6 35 160 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 5 33 152 234 -6.240 -0.039 -6.240 -1.053 -2.269 1.536 -1.282 D 16 14 3 17 3 1 28 149 231 -11.551 -1.585 -0.585 IL 17 17 3 17 3 6 34 159 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 4 32 151 233 -6.240 -0.039 -6.240 -1.378 1.346 -2.085 -0.256 D 19 17 3 20 3 1 28 148 230 -11.551 -1.585 -0.585 IL 20 20 3 20 3 5 33 157 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 3 31 149 231 -1.975 -0.534 -4.186 -0.629 -1.031 -1.652 1.348 D 22 20 3 23 3 0 27 147 229 -11.551 -1.585 -0.585 IL 23 23 3 23 3 4 31 149 231 -6.530 -0.016 -14.174 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - U - - - ML 24 23 3 26 3 3 30 148 230 -6.178 -0.040 -6.178 -1.509 -1.532 -0.221 1.290 D 25 23 3 26 3 0 26 146 228 -12.587 -0.567 -1.621 IL 26 26 3 26 3 4 32 155 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - G - - - ML 27 26 3 29 3 3 30 147 229 -6.240 -0.039 -6.240 -0.588 -1.245 1.269 -0.992 D 28 26 3 29 3 0 24 144 225 -11.551 -1.585 -0.585 IL 29 29 3 29 3 4 31 154 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - a - - - ML 30 29 3 32 3 3 29 146 227 -6.240 -0.039 -6.240 0.927 -2.079 0.641 -1.725 D 31 29 3 32 3 0 24 143 224 -11.551 -1.585 -0.585 IL 32 32 3 32 3 4 30 153 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - A - - - ML 33 32 3 35 3 2 28 145 226 -6.240 -0.039 -6.240 1.106 -0.924 -0.298 -0.979 D 34 32 3 35 3 0 23 142 223 -11.551 -1.585 -0.585 IL 35 35 3 35 3 3 30 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - C - - - ML 36 35 3 38 3 2 27 143 225 -6.240 -0.039 -6.240 -1.750 1.371 -0.803 -0.883 D 37 35 3 38 3 0 22 140 221 -11.551 -1.585 -0.585 IL 38 38 3 38 3 3 29 150 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 39 38 3 41 3 2 27 142 223 -6.240 -0.039 -6.240 1.221 -0.721 -1.474 -0.510 D 40 38 3 41 3 0 22 139 220 -11.551 -1.585 -0.585 IL 41 41 3 41 3 3 28 149 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - G - - - ML 42 41 3 44 3 2 26 141 222 -6.240 -0.039 -6.240 -0.646 -2.820 1.604 -2.484 D 43 41 3 44 3 0 21 138 219 -11.551 -1.585 -0.585 IL 44 44 3 44 3 2 28 148 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 45 44 3 47 3 1 25 140 220 -6.240 -0.039 -6.240 -2.598 1.609 -2.860 -0.629 D 46 44 3 47 3 0 20 137 217 -11.551 -1.585 -0.585 IL 47 47 3 47 3 2 27 146 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 48 47 3 50 3 1 25 138 219 -6.240 -0.039 -6.240 -2.198 -1.978 -1.389 1.654 D 49 47 3 50 3 0 19 135 216 -11.551 -1.585 -0.585 IL 50 50 3 50 3 2 26 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - C - - - ML 51 50 3 53 3 1 24 137 218 -6.240 -0.039 -6.240 -2.727 1.679 -3.002 -0.941 D 52 50 3 53 3 0 19 134 215 -11.551 -1.585 -0.585 IL 53 53 3 53 3 2 25 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - U - - - ML 54 53 3 56 3 1 23 136 216 -6.240 -0.039 -6.240 -2.070 -1.902 -1.158 1.607 D 55 53 3 56 3 0 18 133 213 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 25 143 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - G - - - ML 57 56 3 59 3 1 23 135 215 -6.240 -0.039 -6.240 -2.740 -3.865 1.887 -3.594 D 58 56 3 59 3 0 17 132 212 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 24 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 60 59 3 62 3 1 22 133 214 -6.240 -0.039 -6.240 0.315 -2.310 1.199 -1.957 D 61 59 3 62 3 0 17 130 210 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 23 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - G - - - ML 63 62 3 65 3 1 21 132 212 -6.240 -0.039 -6.240 -0.709 -2.850 1.621 -2.516 D 64 62 3 65 3 0 16 129 209 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 23 139 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - U - - - ML 66 65 3 68 3 1 21 131 211 -6.240 -0.039 -6.240 -1.392 -0.391 -1.021 1.241 D 67 65 3 68 3 0 16 128 208 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 22 138 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - a - - - ML 69 68 3 71 3 1 20 130 210 -6.240 -0.039 -6.240 0.887 -0.880 -0.793 0.043 D 70 68 3 71 3 0 15 126 206 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 21 137 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 72 71 3 74 3 1 19 128 208 -6.240 -0.039 -6.240 0.978 -0.861 -0.374 -0.497 D 73 71 3 74 3 0 14 125 205 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 21 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 75 74 3 77 3 1 19 127 207 -6.240 -0.039 -6.240 -1.495 -1.465 1.529 -1.334 D 76 74 3 77 3 0 14 124 203 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 20 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 78 77 3 80 3 1 18 126 205 -6.240 -0.039 -6.240 -2.600 1.610 -2.862 -0.634 D 79 77 3 80 3 0 13 123 202 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 19 133 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 1 17 124 204 -6.240 -0.039 -6.240 -0.989 -1.384 -0.670 1.313 D 82 80 3 83 3 0 12 121 201 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 19 132 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - G - - - ML 84 83 3 86 3 1 16 123 203 -6.240 -0.039 -6.240 0.520 -2.208 1.051 -1.853 D 85 83 3 86 3 0 12 120 199 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 18 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 87 86 3 89 3 1 16 122 201 -6.240 -0.039 -6.240 1.223 -0.916 -0.617 -1.049 D 88 86 3 89 3 0 11 119 198 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 17 129 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 90 89 3 92 3 1 15 121 200 -6.240 -0.039 -6.240 -2.624 1.624 -2.888 -0.689 D 91 89 3 92 3 0 11 117 196 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 16 128 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 93 92 3 95 3 1 14 119 198 -6.240 -0.107 -4.100 1.390 -1.581 -1.164 -0.741 D 94 92 3 95 3 0 10 116 194 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 17 127 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - A - - - ML 96 95 3 98 3 1 15 118 197 -6.173 -0.041 -6.173 1.657 -2.600 -1.069 -2.296 D 97 95 3 98 3 0 9 114 192 -12.645 -2.680 -0.245 IL 98 98 3 98 3 1 16 125 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 14 117 196 -6.173 -0.041 -6.173 1.716 -2.770 -1.365 -2.480 D 100 98 3 101 3 0 9 113 191 -12.645 -2.680 -0.245 IL 101 101 3 101 3 1 16 124 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - a - - - ML 102 101 3 104 3 1 13 116 194 -6.173 -0.041 -6.173 0.771 -0.709 -0.424 -0.094 D 103 101 3 104 3 0 9 112 190 -12.645 -2.680 -0.245 IL 104 104 3 104 3 1 15 123 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 105 104 3 107 3 1 13 114 193 -6.173 -0.114 -4.012 -2.321 -1.098 -2.551 1.661 D 106 104 3 107 3 0 9 111 189 -12.645 -2.680 -0.245 IL 107 107 3 107 3 1 15 122 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 108 107 3 110 3 1 12 113 191 -6.102 -0.043 -6.102 1.892 -3.564 -3.221 -3.365 D 109 107 3 110 3 0 9 111 189 -13.271 -1.165 -0.852 IL 110 110 3 110 3 1 14 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 111 110 3 113 3 1 12 112 190 -6.172 -0.041 -6.172 1.275 -1.573 -1.683 -0.102 D 112 110 3 113 3 0 8 110 188 -12.661 -0.533 -1.695 IL 113 113 3 113 3 1 13 119 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - G - - - ML 114 113 3 116 3 1 11 110 188 -6.240 -0.039 -6.240 -1.049 -1.300 1.436 -1.301 D 115 113 3 116 3 0 6 107 185 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 12 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 117 116 3 119 3 1 11 109 187 -6.240 -0.039 -6.240 1.915 -3.914 -3.523 -3.726 D 118 116 3 119 3 0 6 106 184 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 12 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - U - - - ML 120 119 3 122 3 1 10 108 185 -6.240 -0.039 -6.240 -1.441 -1.028 -0.754 1.350 D 121 119 3 122 3 0 5 105 182 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 11 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - U - - - ML 123 122 3 125 3 1 9 106 184 -6.240 -0.039 -6.240 -2.275 -0.713 -2.500 1.588 D 124 122 3 125 3 0 5 103 181 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 11 114 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 126 125 3 128 3 1 9 105 183 -6.240 -0.039 -6.240 -2.782 1.706 -3.062 -1.082 D 127 125 3 128 3 0 4 102 179 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 10 113 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - U - - - ML 129 128 3 131 3 1 8 104 181 -6.240 -0.039 -6.240 -3.046 -2.486 -3.246 1.846 D 130 128 3 131 3 0 4 101 178 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 10 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - G - - - ML 132 131 3 134 3 1 8 102 180 -6.240 -0.039 -6.240 -0.851 -2.919 1.654 -2.589 D 133 131 3 134 3 0 3 99 176 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 9 110 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - - - ML 135 134 3 137 3 1 7 101 178 -6.240 -0.039 -6.240 -1.845 -2.652 1.677 -1.457 D 136 134 3 137 3 0 3 98 175 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 8 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - U - - - ML 138 137 3 140 3 1 6 100 177 -6.240 -0.039 -6.240 -0.699 -0.772 -0.337 1.005 D 139 137 3 140 3 0 2 97 173 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 8 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - G - - - ML 141 140 3 143 3 1 6 98 175 -6.240 -0.039 -6.240 -1.911 -2.779 1.715 -1.716 D 142 140 3 143 3 0 2 95 172 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 7 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - C - - - ML 144 143 3 146 3 1 5 97 174 -6.240 -0.039 -6.240 -2.624 1.624 -2.889 -0.691 D 145 143 3 146 3 0 1 94 170 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 6 105 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - U - - - ML 147 146 3 149 3 1 4 96 172 -6.240 -0.039 -6.240 -2.362 -0.941 -2.593 1.641 D 148 146 3 149 3 0 1 93 169 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 5 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - G - - - ML 150 149 3 152 3 1 3 94 170 -6.240 -0.238 -2.848 -0.684 -1.443 1.440 -1.751 D 151 149 3 152 3 0 1 92 168 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 6 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - A - - - ML 153 152 3 155 3 1 4 93 169 -6.046 -0.044 -6.046 1.208 -0.763 -0.789 -0.939 D 154 152 3 155 3 0 0 91 167 -13.610 -0.918 -1.088 IL 155 155 3 155 3 1 5 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - A - - - ML 156 155 3 158 3 1 3 92 168 -6.164 -0.041 -6.164 1.752 -2.879 -1.590 -2.601 D 157 155 3 158 3 0 0 90 165 -12.749 -0.496 -1.783 IL 158 158 3 158 3 1 4 100 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - A - - - ML 159 158 3 161 3 1 3 90 166 -6.240 -0.039 -6.240 1.669 -2.253 -2.435 -1.231 D 160 158 3 161 3 0 0 87 162 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 4 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - A - - - ML 162 161 3 164 3 1 2 89 164 -6.240 -0.039 -6.240 1.402 -1.249 -0.911 -1.304 D 163 161 3 164 3 0 0 86 161 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 3 97 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - G - - - ML 165 164 3 167 3 1 2 87 163 -6.240 -0.039 -6.240 -2.740 -3.865 1.887 -3.594 D 166 164 3 167 3 0 0 84 159 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 3 96 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - C - - - ML 168 167 3 170 3 1 2 86 161 -6.240 -0.039 -6.240 -2.623 1.624 -2.887 -0.687 D 169 167 3 170 3 0 0 83 158 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 2 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - U - - - ML 171 170 3 173 3 1 1 85 160 -6.240 -0.083 -4.542 -0.740 -1.757 -2.077 1.520 D 172 170 3 173 3 0 0 81 156 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 2 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - G - - - ML 174 173 3 176 3 1 1 83 158 -6.196 -0.040 -6.196 -0.350 -1.350 1.308 -1.529 D 175 173 3 176 3 0 0 80 154 -12.357 -2.391 -0.306 IL 176 176 3 176 3 1 2 92 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - A - - - ML 177 176 3 179 3 1 1 82 156 -6.196 -0.040 -6.196 1.670 -2.663 -1.107 -2.361 D 178 176 3 179 3 0 0 79 154 -12.357 -0.693 -1.391 IL 179 179 3 179 3 1 2 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - G - - - ML 180 179 3 182 3 1 1 80 155 -6.240 -0.117 -3.953 -0.164 -0.918 1.114 -1.276 D 181 179 3 182 3 0 0 77 151 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 89 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - U - - - ML 183 182 3 185 3 1 1 79 153 -6.164 -0.242 -2.831 -0.755 -1.386 -1.166 1.367 D 184 182 3 185 3 0 0 75 149 -12.749 -2.783 -0.227 IL 185 185 3 185 3 1 1 88 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - A - - - ML 186 185 3 188 3 1 1 78 152 -5.969 -0.047 -5.969 1.009 -1.157 -0.216 -0.561 D 187 185 3 188 3 0 0 74 148 -13.962 -3.996 -0.093 IL 188 188 3 188 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - u - - - ML 189 188 3 191 3 1 1 76 150 -5.969 -0.047 -5.969 -0.418 -0.684 -0.583 0.972 D 190 188 3 191 3 0 0 74 148 -13.962 -0.193 -2.996 IL 191 191 3 191 3 1 1 85 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 65 - G - - - ML 192 191 3 194 3 1 1 74 148 -6.240 -0.039 -6.240 -0.907 -2.946 1.666 -2.618 D 193 191 3 194 3 0 0 71 144 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 66 - U - - - ML 195 194 3 197 3 1 1 73 146 -6.240 -0.039 -6.240 -3.046 -2.486 -3.246 1.846 D 196 194 3 197 3 0 0 70 142 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 67 - G - - - ML 198 197 3 200 3 1 1 71 144 -6.240 -0.117 -3.953 -2.740 -3.865 1.887 -3.594 D 199 197 3 200 3 0 0 68 141 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 81 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 68 - A - - - ML 201 200 3 203 3 1 1 70 142 -6.164 -0.041 -6.164 1.903 -3.722 -3.359 -3.528 D 202 200 3 203 3 0 0 67 140 -12.749 -0.496 -1.783 IL 203 203 3 203 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 69 - C - - - ML 204 203 3 206 3 1 1 68 140 -6.240 -0.107 -4.100 -2.320 1.576 -0.901 -1.825 D 205 203 3 206 3 0 0 65 136 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 78 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 70 - C - - - ML 207 206 3 209 3 1 1 67 139 -6.173 -0.110 -4.073 -3.128 1.845 -3.382 -2.341 D 208 206 3 209 3 0 0 63 134 -12.645 -2.680 -0.245 IL 209 209 3 209 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 71 - c - - - ML 210 209 3 212 3 1 1 65 137 -6.106 -0.043 -6.106 -0.632 0.897 -1.410 0.158 D 211 209 3 212 3 0 0 62 134 -13.243 -0.334 -2.277 IL 212 212 3 212 3 1 1 75 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 72 - U - - - ML 213 212 3 215 3 1 1 63 134 -6.240 -0.039 -6.240 -0.768 -1.767 -2.093 1.528 D 214 212 3 215 3 0 0 59 130 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 73 - G - - - ML 216 215 3 218 3 1 1 61 132 -6.240 -0.039 -6.240 -0.914 -2.949 1.668 -2.621 D 217 215 3 218 3 0 0 57 127 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 72 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 74 - a - - - ML 219 218 3 221 3 1 1 59 130 -6.240 -0.039 -6.240 0.892 -0.589 -0.433 -0.436 D 220 218 3 221 3 0 0 54 125 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 70 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 75 - U - - - ML 222 221 3 224 3 1 1 57 127 -6.240 -0.039 -6.240 -1.001 -0.573 -1.712 1.335 D 223 221 3 224 3 0 0 52 122 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 76 - c - - - ML 225 224 3 227 3 1 1 55 125 -6.240 -0.039 -6.240 -0.125 0.520 -0.471 -0.108 D 226 224 3 227 3 0 0 49 118 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 67 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 77 - a - - - ML 228 227 3 230 3 1 1 52 121 -6.240 -0.039 -6.240 0.475 -0.473 -0.325 0.126 D 229 227 3 230 3 0 0 44 113 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 1 65 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 78 - a - - - ML 231 230 3 233 3 1 1 48 117 -6.240 -0.039 -6.240 0.631 -0.709 -0.505 0.183 D 232 230 3 233 3 0 0 33 102 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 1 63 132 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 79 - c - - - ML 234 233 3 236 3 1 1 7 14 -4.140 -0.105 -6.240 -0.061 0.305 -0.484 0.125 D 235 233 3 236 3 0 0 4 11 -11.551 -1.585 -0.585 IL 236 236 3 236 3 1 1 7 14 -4.149 -0.084 -11.793 0.000 0.000 0.000 0.000 [ MATL 79 ] 81 - A - - - ML 237 236 3 239 2 1 1 1 1 * 0.000 1.028 -0.843 -0.754 -0.303 D 238 236 3 239 2 0 0 0 0 * 0.000 IL 239 239 3 239 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 80 ] - - - - - - E 240 239 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME CLRN1-AS1 ACC RF02089 DESC CLRN1 antisense RNA 1 conserved region LENG 79 MAXL 157 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:48:17 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 19 EFFN 5.357666 STATS LOCAL MSV -8.0606 0.71859 STATS LOCAL VITERBI -9.3747 0.71859 STATS LOCAL FORWARD -3.6280 0.71859 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27798 1.62379 1.30632 1.37265 1.38629 1.38629 1.38629 1.38629 0.01521 5.49583 4.51066 0.39730 1.11515 0.00000 * 1 2.21449 1.68581 1.77949 0.62218 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 2 0.75841 2.28953 1.31832 1.81591 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 3 2.26128 3.54671 0.18504 3.32725 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 4 0.05893 4.09918 3.82832 3.96885 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 5 2.11608 2.95893 0.32184 2.27488 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 6 2.34152 0.45339 2.83121 1.56349 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 7 1.82199 2.10084 2.53139 0.45194 - U - - : 1.38629 1.38629 1.38629 1.38629 0.37006 1.36898 2.90150 0.01088 4.52635 1.09861 0.40547 8 2.43255 2.44832 1.53969 0.49216 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02800 4.28254 4.28254 1.46634 0.26236 0.39317 1.12367 9 1.79419 2.24894 0.50657 2.07409 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 10 0.74376 2.82722 0.94195 2.58189 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 11 0.61979 2.02709 1.59260 2.06491 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 12 2.59932 0.43570 1.94276 1.99838 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 13 0.53982 1.88614 2.40830 1.73999 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 14 1.83433 3.34069 0.27421 3.10790 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 15 3.18710 0.27098 3.36845 1.82244 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 16 2.91003 2.75720 2.34932 0.24001 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 17 3.27677 0.22216 3.46716 2.03823 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 18 2.82084 2.70441 2.18911 0.27244 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 19 3.28544 4.06552 0.07826 3.87769 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 20 1.16776 2.98742 0.55489 2.74284 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 21 1.87793 3.36204 0.26302 3.13040 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 22 2.35142 1.65760 2.09402 0.52597 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 23 0.77171 1.99592 1.93563 1.35652 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 24 0.70857 1.98327 1.64548 1.73096 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 25 2.42264 2.40205 0.32629 2.31076 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 26 3.18851 0.27014 3.37001 1.82570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 27 2.07198 2.34571 1.85075 0.47616 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 28 1.02558 2.91648 0.65760 2.67081 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 29 0.53843 2.02144 1.81388 2.11322 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 30 3.20493 0.26060 3.38809 1.86386 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 31 0.42275 2.48207 2.19318 1.89963 - A - - : 1.38629 1.38629 1.38629 1.38629 0.07422 4.32515 2.84216 1.46634 0.26236 1.09861 0.40547 32 0.23740 3.18868 2.12701 2.97773 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02810 4.27903 4.27903 1.46634 0.26236 1.85725 0.16972 33 0.19663 3.30598 2.33270 3.10532 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02810 4.27903 4.27903 1.46634 0.26236 1.85725 0.16972 34 0.85190 1.87772 1.68045 1.45172 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02810 4.27903 4.27903 1.46634 0.26236 1.85725 0.16972 35 2.99533 2.14733 3.15424 0.23507 - U - - : 1.38629 1.38629 1.38629 1.38629 0.07889 4.27903 2.78056 1.46634 0.26236 1.85725 0.16972 36 0.07497 3.85648 3.61876 3.71849 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02955 4.22969 4.22969 1.46634 0.26236 0.80762 0.59044 37 0.50232 2.47633 2.55255 1.45696 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02813 4.27808 4.27808 1.46634 0.26236 0.36945 1.17478 38 2.11328 2.28754 0.39128 2.28817 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 39 0.05893 4.09918 3.82832 3.96885 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 40 2.38535 2.09896 1.90911 0.45076 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 41 2.96293 1.88063 3.11925 0.28549 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 42 3.31480 0.20379 3.50885 2.13631 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 43 3.49763 3.10936 3.63634 0.10675 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 44 1.97589 3.40946 0.23986 3.18056 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 45 2.66523 3.22468 0.22368 2.39604 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 46 1.87057 1.92165 1.61994 0.68978 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 47 2.71106 3.31223 0.19723 2.57574 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 48 3.20544 0.26030 3.38866 1.86507 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 49 3.02338 2.03820 3.18343 0.24890 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 50 1.86012 2.38674 0.38836 2.60029 - G - - : 1.38629 1.38629 1.38629 1.38629 0.16504 4.32515 1.97396 1.46634 0.26236 1.09861 0.40547 51 0.54890 1.91517 1.93286 2.03744 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03073 4.19085 4.19085 1.46634 0.26236 0.63596 0.75380 52 0.17224 3.38175 2.48850 3.18926 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02829 4.27243 4.27243 1.46634 0.26236 0.34340 1.23565 53 0.22964 2.94813 3.07409 2.23954 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 54 0.41457 2.25184 2.01776 2.29047 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 55 3.28544 4.06552 0.07826 3.87769 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 56 3.20432 0.26095 3.38741 1.86243 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 57 1.89910 2.60417 2.82566 0.33259 - U - - : 1.38629 1.38629 1.38629 1.38629 0.05778 4.32515 3.14857 1.46634 0.26236 1.09861 0.40547 58 1.62868 2.32178 0.47953 2.44603 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02765 4.29502 4.29502 1.46634 0.26236 1.65694 0.21161 59 0.22842 3.23219 2.15355 3.02268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02765 4.29502 4.29502 1.46634 0.26236 0.48037 0.96379 60 1.49969 2.02274 0.61387 2.27057 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08101 4.32515 2.73975 1.46634 0.26236 1.09861 0.40547 61 1.90967 2.34682 2.19460 0.43882 - U - - : 1.38629 1.38629 1.38629 1.38629 0.16783 4.27243 1.96213 1.46634 0.26236 1.92880 0.15703 62 0.68683 2.18803 1.53606 1.77512 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03246 4.13705 4.13705 1.46634 0.26236 2.77000 0.06471 63 1.67572 1.86035 1.79065 0.71262 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03246 4.13705 4.13705 1.46634 0.26236 0.13390 2.07685 64 2.01527 3.42839 0.23125 3.20067 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 65 3.49763 3.10936 3.63634 0.10675 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 66 3.28544 4.06552 0.07826 3.87769 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08101 4.32515 2.73975 1.46634 0.26236 1.09861 0.40547 67 0.06719 3.96621 3.71441 3.83179 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02829 4.27243 4.27243 1.46634 0.26236 0.34340 1.23565 68 2.99425 0.29367 2.01112 2.65128 - C - - : 1.38629 1.38629 1.38629 1.38629 0.07422 4.32515 2.84216 1.46634 0.26236 1.09861 0.40547 69 3.55467 0.10750 3.73056 3.00881 - C - - : 1.38629 1.38629 1.38629 1.38629 0.07609 4.27903 2.82328 1.46634 0.26236 1.85725 0.16972 70 1.82434 0.76434 2.36385 1.27663 - c - - : 1.38629 1.38629 1.38629 1.38629 0.02946 4.23241 4.23241 1.46634 0.26236 0.23107 1.57834 71 1.91872 2.61075 2.83723 0.32693 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 72 2.01991 3.43061 0.23026 3.20304 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 73 0.76829 1.79446 1.68636 1.68856 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 74 2.08033 1.78327 2.57308 0.46089 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 75 1.47301 1.02571 1.71305 1.46142 - c - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 76 1.05691 1.71402 1.61181 1.29900 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 77 0.94872 1.87779 1.73660 1.25978 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02682 4.32515 4.32515 1.46634 0.26236 1.09861 0.40547 78 1.42853 1.17467 1.72144 1.29971 - c - - : 1.38629 1.38629 1.38629 1.38629 0.07253 2.86939 4.32515 0.05803 2.87574 1.09861 0.40547 79 0.67400 1.97039 1.90889 1.59608 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99936 0.00000 * //