INFERNAL1/a [1.1.5 | Sep 2023] NAME CLRN1-AS1 ACC RF02089 DESC CLRN1 antisense RNA 1 conserved region STATES 241 NODES 81 CLEN 79 W 157 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 22:43:30 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02089/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 5.376221 CKSUM 3781449036 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.50 NC 45.80 EFP7GF -9.3235 0.71857 ECMLC 0.70424 -9.06339 -0.88824 1600000 379779 0.003160 ECMGC 0.39245 -17.19552 -5.23184 1600000 43766 0.009140 ECMLI 0.66670 -7.69355 0.49393 1600000 281728 0.004259 ECMGI 0.45499 -10.09424 -0.05471 1600000 38536 0.010380 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 157 239 -7.933 -8.140 -0.027 -6.554 IL 1 1 2 1 4 7 37 159 241 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 6 36 158 241 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 7 36 157 239 -6.243 -0.039 -6.243 -1.191 -0.425 -0.554 1.095 D 4 2 3 5 3 3 31 154 236 -11.551 -1.585 -0.585 IL 5 5 3 5 3 8 38 163 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 6 35 156 238 -6.243 -0.039 -6.243 0.906 -1.305 0.098 -0.620 D 7 5 3 8 3 2 31 153 235 -11.551 -1.585 -0.585 IL 8 8 3 8 3 8 37 162 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 6 34 154 236 -6.243 -0.039 -6.243 -1.251 -3.116 1.731 -2.799 D 10 8 3 11 3 2 30 151 233 -11.551 -1.585 -0.585 IL 11 11 3 11 3 7 36 161 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 5 34 153 235 -6.243 -0.039 -6.243 1.915 -3.923 -3.531 -3.735 D 13 11 3 14 3 1 29 150 232 -11.551 -1.585 -0.585 IL 14 14 3 14 3 6 35 160 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 5 33 152 234 -6.243 -0.039 -6.243 -1.044 -2.261 1.531 -1.266 D 16 14 3 17 3 1 28 149 231 -11.551 -1.585 -0.585 IL 17 17 3 17 3 6 34 159 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 4 32 151 232 -6.243 -0.039 -6.243 -1.362 1.337 -2.072 -0.239 D 19 17 3 20 3 1 28 148 230 -11.551 -1.585 -0.585 IL 20 20 3 20 3 5 33 157 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 3 31 149 231 -2.028 -0.517 -4.164 -0.615 -1.034 -1.649 1.345 D 22 20 3 23 3 0 27 147 229 -11.551 -1.585 -0.585 IL 23 23 3 23 3 4 31 149 231 -6.479 -0.016 -14.123 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - U - - - ML 24 23 3 26 3 3 30 148 230 -6.181 -0.040 -6.181 -1.504 -1.530 -0.201 1.282 D 25 23 3 26 3 0 26 146 228 -12.604 -0.559 -1.639 IL 26 26 3 26 3 4 32 155 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - G - - - ML 27 26 3 29 3 3 30 147 229 -6.243 -0.039 -6.243 -0.592 -1.232 1.265 -0.981 D 28 26 3 29 3 0 24 144 225 -11.551 -1.585 -0.585 IL 29 29 3 29 3 4 31 154 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - a - - - ML 30 29 3 32 3 3 29 146 227 -6.243 -0.039 -6.243 0.912 -2.086 0.662 -1.732 D 31 29 3 32 3 0 24 143 224 -11.551 -1.585 -0.585 IL 32 32 3 32 3 4 30 152 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - A - - - ML 33 32 3 35 3 2 28 144 226 -6.243 -0.039 -6.243 1.100 -0.917 -0.289 -0.976 D 34 32 3 35 3 0 23 141 223 -11.551 -1.585 -0.585 IL 35 35 3 35 3 3 30 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - C - - - ML 36 35 3 38 3 2 27 143 224 -6.243 -0.039 -6.243 -1.739 1.364 -0.784 -0.872 D 37 35 3 38 3 0 22 140 221 -11.551 -1.585 -0.585 IL 38 38 3 38 3 3 29 150 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 39 38 3 41 3 2 27 142 223 -6.243 -0.039 -6.243 1.215 -0.711 -1.470 -0.500 D 40 38 3 41 3 0 22 139 220 -11.551 -1.585 -0.585 IL 41 41 3 41 3 3 28 149 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - G - - - ML 42 41 3 44 3 2 26 141 222 -6.243 -0.039 -6.243 -0.636 -2.820 1.602 -2.484 D 43 41 3 44 3 0 21 138 219 -11.551 -1.585 -0.585 IL 44 44 3 44 3 2 28 148 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 45 44 3 47 3 1 25 140 220 -6.243 -0.039 -6.243 -2.597 1.606 -2.858 -0.614 D 46 44 3 47 3 0 20 136 217 -11.551 -1.585 -0.585 IL 47 47 3 47 3 2 27 146 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 48 47 3 50 3 1 25 138 219 -6.243 -0.039 -6.243 -2.307 -2.043 -1.579 1.687 D 49 47 3 50 3 0 19 135 216 -11.551 -1.585 -0.585 IL 50 50 3 50 3 2 26 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - C - - - ML 51 50 3 53 3 1 24 137 218 -6.243 -0.039 -6.243 -2.728 1.677 -3.002 -0.928 D 52 50 3 53 3 0 19 134 214 -11.551 -1.585 -0.585 IL 53 53 3 53 3 2 25 144 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - U - - - ML 54 53 3 56 3 1 23 136 216 -6.243 -0.039 -6.243 -2.065 -1.901 -1.142 1.604 D 55 53 3 56 3 0 18 133 213 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 25 143 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - G - - - ML 57 56 3 59 3 1 23 134 215 -6.243 -0.039 -6.243 -2.745 -3.872 1.888 -3.601 D 58 56 3 59 3 0 17 131 212 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 24 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 60 59 3 62 3 1 22 133 214 -6.243 -0.039 -6.243 0.289 -2.330 1.217 -1.977 D 61 59 3 62 3 0 17 130 210 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 23 140 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - G - - - ML 63 62 3 65 3 1 21 132 212 -6.243 -0.039 -6.243 -0.701 -2.851 1.619 -2.517 D 64 62 3 65 3 0 16 129 209 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 23 139 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - U - - - ML 66 65 3 68 3 1 21 131 211 -6.243 -0.039 -6.243 -1.391 -0.378 -1.019 1.236 D 67 65 3 68 3 0 16 128 208 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 22 138 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - a - - - ML 69 68 3 71 3 1 20 129 209 -6.243 -0.039 -6.243 0.879 -0.876 -0.793 0.055 D 70 68 3 71 3 0 15 126 206 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 21 136 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 72 71 3 74 3 1 19 128 208 -6.243 -0.039 -6.243 0.972 -0.857 -0.363 -0.496 D 73 71 3 74 3 0 14 125 205 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 21 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 75 74 3 77 3 1 19 127 207 -6.243 -0.039 -6.243 -1.493 -1.450 1.525 -1.319 D 76 74 3 77 3 0 14 124 203 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 20 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 78 77 3 80 3 1 18 126 205 -6.243 -0.039 -6.243 -2.606 1.611 -2.868 -0.634 D 79 77 3 80 3 0 13 123 202 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 19 133 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 1 17 124 204 -6.243 -0.039 -6.243 -0.993 -1.387 -0.665 1.313 D 82 80 3 83 3 0 12 121 201 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 19 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - G - - - ML 84 83 3 86 3 1 16 123 202 -6.243 -0.039 -6.243 0.490 -2.228 1.077 -1.874 D 85 83 3 86 3 0 12 120 199 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 18 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 87 86 3 89 3 1 16 122 201 -6.243 -0.039 -6.243 1.219 -0.914 -0.604 -1.046 D 88 86 3 89 3 0 11 119 198 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 17 129 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 90 89 3 92 3 1 15 121 200 -6.243 -0.039 -6.243 -2.623 1.621 -2.887 -0.674 D 91 89 3 92 3 0 11 117 196 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 16 128 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 93 92 3 95 3 1 14 119 198 -6.243 -0.107 -4.096 1.389 -1.580 -1.168 -0.731 D 94 92 3 95 3 0 10 116 194 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 17 127 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - A - - - ML 96 95 3 98 3 1 15 118 197 -6.177 -0.040 -6.177 1.654 -2.595 -1.050 -2.290 D 97 95 3 98 3 0 9 114 192 -12.651 -2.685 -0.244 IL 98 98 3 98 3 1 16 125 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 14 117 196 -6.177 -0.040 -6.177 1.714 -2.765 -1.348 -2.475 D 100 98 3 101 3 0 9 113 191 -12.651 -2.685 -0.244 IL 101 101 3 101 3 1 16 124 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - a - - - ML 102 101 3 104 3 1 13 116 194 -6.177 -0.040 -6.177 0.762 -0.703 -0.421 -0.085 D 103 101 3 104 3 0 9 112 190 -12.651 -2.685 -0.244 IL 104 104 3 104 3 1 15 123 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 105 104 3 107 3 1 13 114 193 -6.177 -0.115 -3.989 -2.323 -1.089 -2.552 1.660 D 106 104 3 107 3 0 9 111 189 -12.651 -2.685 -0.244 IL 107 107 3 107 3 1 15 122 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 108 107 3 110 3 1 12 113 191 -6.104 -0.043 -6.104 1.892 -3.568 -3.225 -3.369 D 109 107 3 110 3 0 9 111 189 -13.286 -1.173 -0.846 IL 110 110 3 110 3 1 14 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 111 110 3 113 3 1 12 112 190 -6.174 -0.041 -6.174 1.267 -1.568 -1.677 -0.084 D 112 110 3 113 3 0 8 110 188 -12.679 -0.525 -1.713 IL 113 113 3 113 3 1 13 119 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - G - - - ML 114 113 3 116 3 1 11 110 188 -6.243 -0.039 -6.243 -1.052 -1.289 1.435 -1.303 D 115 113 3 116 3 0 6 107 185 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 12 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 117 116 3 119 3 1 11 109 187 -6.243 -0.039 -6.243 1.915 -3.923 -3.531 -3.735 D 118 116 3 119 3 0 6 106 184 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 12 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - U - - - ML 120 119 3 122 3 1 10 108 185 -6.243 -0.039 -6.243 -1.447 -1.034 -0.757 1.352 D 121 119 3 122 3 0 5 105 182 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 11 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - U - - - ML 123 122 3 125 3 1 9 106 184 -6.243 -0.039 -6.243 -2.278 -0.708 -2.504 1.588 D 124 122 3 125 3 0 5 103 181 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 11 114 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 126 125 3 128 3 1 9 105 182 -6.243 -0.039 -6.243 -2.783 1.704 -3.063 -1.070 D 127 125 3 128 3 0 4 102 179 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 10 113 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - U - - - ML 129 128 3 131 3 1 8 104 181 -6.243 -0.039 -6.243 -3.053 -2.492 -3.254 1.847 D 130 128 3 131 3 0 4 101 178 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 9 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - G - - - ML 132 131 3 134 3 1 8 102 180 -6.243 -0.039 -6.243 -0.836 -2.917 1.651 -2.586 D 133 131 3 134 3 0 3 99 176 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 9 110 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - - - ML 135 134 3 137 3 1 7 101 178 -6.243 -0.039 -6.243 -1.845 -2.649 1.675 -1.441 D 136 134 3 137 3 0 3 98 175 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 8 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - u - - - ML 138 137 3 140 3 1 6 100 177 -6.243 -0.039 -6.243 -0.692 -0.772 -0.324 0.998 D 139 137 3 140 3 0 2 97 173 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 8 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - G - - - ML 141 140 3 143 3 1 6 98 175 -6.243 -0.039 -6.243 -1.910 -2.776 1.714 -1.702 D 142 140 3 143 3 0 2 95 172 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 7 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - C - - - ML 144 143 3 146 3 1 5 97 174 -6.243 -0.039 -6.243 -2.624 1.621 -2.888 -0.676 D 145 143 3 146 3 0 1 94 170 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 6 105 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - U - - - ML 147 146 3 149 3 1 4 96 172 -6.243 -0.039 -6.243 -2.363 -0.929 -2.594 1.639 D 148 146 3 149 3 0 1 93 169 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 5 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - G - - - ML 150 149 3 152 3 1 3 94 170 -6.243 -0.242 -2.821 -0.671 -1.426 1.433 -1.741 D 151 149 3 152 3 0 1 92 168 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 6 102 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - A - - - ML 153 152 3 155 3 1 4 93 169 -6.045 -0.044 -6.045 1.198 -0.749 -0.773 -0.928 D 154 152 3 155 3 0 0 91 167 -13.635 -0.915 -1.091 IL 155 155 3 155 3 1 5 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - A - - - ML 156 155 3 158 3 1 3 92 167 -6.166 -0.041 -6.166 1.749 -2.872 -1.572 -2.593 D 157 155 3 158 3 0 0 90 165 -12.768 -0.488 -1.802 IL 158 158 3 158 3 1 4 100 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - A - - - ML 159 158 3 161 3 1 3 90 166 -6.243 -0.039 -6.243 1.666 -2.248 -2.431 -1.216 D 160 158 3 161 3 0 0 87 162 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 4 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - A - - - ML 162 161 3 164 3 1 2 89 164 -6.243 -0.039 -6.243 1.396 -1.237 -0.896 -1.295 D 163 161 3 164 3 0 0 86 161 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 3 97 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - G - - - ML 165 164 3 167 3 1 2 87 163 -6.243 -0.039 -6.243 -2.745 -3.872 1.888 -3.601 D 166 164 3 167 3 0 0 84 159 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 3 96 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - C - - - ML 168 167 3 170 3 1 2 86 161 -6.243 -0.039 -6.243 -2.622 1.620 -2.886 -0.672 D 169 167 3 170 3 0 0 83 158 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 2 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - U - - - ML 171 170 3 173 3 1 1 85 160 -6.243 -0.083 -4.553 -0.723 -1.756 -2.071 1.516 D 172 170 3 173 3 0 0 81 156 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 2 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - G - - - ML 174 173 3 176 3 1 1 83 158 -6.200 -0.040 -6.200 -0.385 -1.353 1.322 -1.548 D 175 173 3 176 3 0 0 80 154 -12.352 -2.387 -0.307 IL 176 176 3 176 3 1 2 92 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - A - - - ML 177 176 3 179 3 1 1 82 156 -6.200 -0.040 -6.200 1.667 -2.660 -1.089 -2.357 D 178 176 3 179 3 0 0 79 154 -12.352 -0.696 -1.387 IL 179 179 3 179 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - G - - - ML 180 179 3 182 3 1 1 80 155 -6.243 -0.118 -3.930 -0.194 -0.922 1.131 -1.293 D 181 179 3 182 3 0 0 77 151 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 89 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - U - - - ML 183 182 3 185 3 1 1 79 153 -6.166 -0.247 -2.803 -0.744 -1.385 -1.169 1.365 D 184 182 3 185 3 0 0 75 149 -12.768 -2.802 -0.224 IL 185 185 3 185 3 1 1 88 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - A - - - ML 186 185 3 188 3 1 1 78 152 -5.966 -0.047 -5.966 1.003 -1.154 -0.204 -0.560 D 187 185 3 188 3 0 0 74 148 -13.989 -4.024 -0.092 IL 188 188 3 188 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - u - - - ML 189 188 3 191 3 1 1 76 150 -5.966 -0.047 -5.966 -0.404 -0.675 -0.570 0.959 D 190 188 3 191 3 0 0 74 147 -13.989 -0.189 -3.024 IL 191 191 3 191 3 1 1 85 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 65 - G - - - ML 192 191 3 194 3 1 1 74 148 -6.243 -0.039 -6.243 -0.894 -2.944 1.664 -2.615 D 193 191 3 194 3 0 0 71 144 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 66 - U - - - ML 195 194 3 197 3 1 1 73 146 -6.243 -0.039 -6.243 -3.053 -2.492 -3.254 1.847 D 196 194 3 197 3 0 0 70 142 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 67 - G - - - ML 198 197 3 200 3 1 1 71 144 -6.243 -0.118 -3.930 -2.745 -3.872 1.888 -3.601 D 199 197 3 200 3 0 0 68 141 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 81 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 68 - A - - - ML 201 200 3 203 3 1 1 70 142 -6.166 -0.041 -6.166 1.903 -3.727 -3.363 -3.533 D 202 200 3 203 3 0 0 67 140 -12.768 -0.488 -1.802 IL 203 203 3 203 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 69 - C - - - ML 204 203 3 206 3 1 1 68 140 -6.243 -0.107 -4.096 -2.315 1.572 -0.881 -1.823 D 205 203 3 206 3 0 0 64 136 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 78 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 70 - C - - - ML 207 206 3 209 3 1 1 66 139 -6.177 -0.096 -4.297 -3.134 1.846 -3.388 -2.346 D 208 206 3 209 3 0 0 63 134 -12.651 -2.685 -0.244 IL 209 209 3 209 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 71 - c - - - ML 210 209 3 212 3 1 1 65 137 -6.122 -0.042 -6.122 -0.632 0.897 -1.420 0.163 D 211 209 3 212 3 0 0 62 134 -13.153 -0.358 -2.188 IL 212 212 3 212 3 1 1 75 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 72 - U - - - ML 213 212 3 215 3 1 1 63 134 -6.243 -0.039 -6.243 -0.871 -1.806 -2.159 1.557 D 214 212 3 215 3 0 0 59 130 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 73 - G - - - ML 216 215 3 218 3 1 1 61 132 -6.243 -0.039 -6.243 -0.908 -2.951 1.667 -2.622 D 217 215 3 218 3 0 0 57 127 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 72 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 74 - a - - - ML 219 218 3 221 3 1 1 59 130 -6.243 -0.039 -6.243 0.907 -0.641 -0.427 -0.434 D 220 218 3 221 3 0 0 54 125 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 70 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 75 - U - - - ML 222 221 3 224 3 1 1 57 127 -6.243 -0.039 -6.243 -1.135 -0.577 -1.795 1.371 D 223 221 3 224 3 0 0 52 122 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 76 - c - - - ML 225 224 3 227 3 1 1 55 125 -6.243 -0.039 -6.243 -0.155 0.529 -0.463 -0.100 D 226 224 3 227 3 0 0 49 118 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 67 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 77 - a - - - ML 228 227 3 230 3 1 1 52 121 -6.243 -0.039 -6.243 0.485 -0.463 -0.369 0.139 D 229 227 3 230 3 0 0 44 113 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 1 65 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 78 - a - - - ML 231 230 3 233 3 1 1 48 117 -6.243 -0.039 -6.243 0.644 -0.704 -0.497 0.157 D 232 230 3 233 3 0 0 33 102 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 1 63 132 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 79 - c - - - ML 234 233 3 236 3 1 1 7 14 -4.364 -0.092 -6.243 -0.085 0.313 -0.480 0.134 D 235 233 3 236 3 0 0 5 11 -11.551 -1.585 -0.585 IL 236 236 3 236 3 1 1 7 14 -3.878 -0.102 -11.522 0.000 0.000 0.000 0.000 [ MATL 79 ] 81 - A - - - ML 237 236 3 239 2 1 1 1 1 * 0.000 1.054 -0.851 -0.833 -0.307 D 238 236 3 239 2 0 0 0 0 * 0.000 IL 239 239 3 239 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 80 ] - - - - - - E 240 239 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CLRN1-AS1 ACC RF02089 DESC CLRN1 antisense RNA 1 conserved region LENG 79 MAXL 157 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 9 22:43:30 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02089/CM NSEQ 19 EFFN 5.376221 CKSUM 3781449036 STATS LOCAL MSV -8.1298 0.71857 STATS LOCAL VITERBI -9.3767 0.71857 STATS LOCAL FORWARD -3.6304 0.71857 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28060 1.62437 1.30561 1.37008 1.38629 1.38629 1.38629 1.38629 0.01517 5.49850 4.51332 0.39730 1.11515 0.00000 * 1 2.21179 1.68088 1.77013 0.62741 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 2 0.75819 2.29087 1.31815 1.81599 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 3 2.25313 3.54592 0.18614 3.32613 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 4 0.05858 4.10529 3.83350 3.97514 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 5 2.10974 2.95343 0.32485 2.26398 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 6 2.33070 0.45964 2.82249 1.55211 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 7 1.81239 2.10323 2.52936 0.45419 - U - - : 1.38629 1.38629 1.38629 1.38629 0.35817 1.40542 2.88633 0.01127 4.49098 1.09861 0.40547 8 2.42890 2.44674 1.52586 0.49781 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02796 4.28409 4.28409 1.46634 0.26236 0.38747 1.13560 9 1.79646 2.23993 0.50924 2.06596 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 10 0.75438 2.83242 0.92740 2.58702 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 11 0.62376 2.02164 1.58679 2.06312 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 12 2.59163 0.44115 1.92967 1.99063 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 13 0.54431 1.87918 2.40512 1.73281 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 14 1.82738 3.34078 0.27568 3.10782 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 15 3.18641 0.27336 3.36748 1.81164 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 16 2.98556 2.80242 2.48095 0.21671 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 17 3.27709 0.22362 3.46732 2.02919 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 18 2.81778 2.70374 2.17755 0.27445 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 19 3.28903 4.07014 0.07793 3.88232 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 20 1.18597 3.00108 0.54246 2.75671 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 21 1.87220 3.36272 0.26410 3.13092 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 22 2.35043 1.64856 2.09228 0.52943 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 23 0.77699 1.99335 1.93624 1.34811 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 24 0.71258 1.98024 1.63800 1.73038 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 25 2.42134 2.39123 0.32922 2.30065 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 26 3.19262 0.26967 3.37432 1.82596 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 27 2.07463 2.34749 1.84699 0.47630 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 28 1.04682 2.93045 0.63989 2.68493 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 29 0.54149 2.02015 1.80521 2.11162 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 30 3.20442 0.26278 3.38733 1.85337 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 31 0.42381 2.48152 2.19616 1.89311 - A - - : 1.38629 1.38629 1.38629 1.38629 0.07437 4.32760 2.83924 1.46634 0.26236 1.09861 0.40547 32 0.23983 3.18522 2.11403 2.97367 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02804 4.28127 4.28127 1.46634 0.26236 1.86095 0.16904 33 0.19840 3.30308 2.32058 3.10181 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02804 4.28127 4.28127 1.46634 0.26236 1.86095 0.16904 34 0.85790 1.87390 1.67819 1.44514 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02804 4.28127 4.28127 1.46634 0.26236 1.86095 0.16904 35 2.99622 2.14116 3.15518 0.23588 - U - - : 1.38629 1.38629 1.38629 1.38629 0.07993 4.28127 2.76478 1.46634 0.26236 1.86095 0.16904 36 0.07474 3.85951 3.62141 3.72162 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02951 4.23086 4.23086 1.46634 0.26236 0.81283 0.58627 37 0.50819 2.47289 2.54842 1.44447 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02809 4.27952 4.27952 1.46634 0.26236 0.36392 1.18727 38 2.11576 2.27954 0.39184 2.28949 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 39 0.05858 4.10529 3.83350 3.97514 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 40 2.38930 2.10288 1.91093 0.44901 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 41 2.96555 1.87706 3.12194 0.28587 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 42 3.31557 0.20491 3.50954 2.12820 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 43 3.50267 3.11364 3.64147 0.10622 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 44 1.96609 3.40813 0.24174 3.17894 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 45 2.66485 3.22231 0.22507 2.38524 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 46 1.86605 1.92114 1.61106 0.69485 - u - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 47 2.71053 3.31043 0.19823 2.56633 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 48 3.20495 0.26248 3.38790 1.85459 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 49 3.02425 2.03048 3.18429 0.25010 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 50 1.85120 2.37496 0.39283 2.59304 - G - - : 1.38629 1.38629 1.38629 1.38629 0.16806 4.32760 1.95545 1.46634 0.26236 1.09861 0.40547 51 0.55585 1.90544 1.92211 2.02983 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03075 4.19029 4.19029 1.46634 0.26236 0.63392 0.75611 52 0.17399 3.37694 2.47563 3.18377 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02825 4.27375 4.27375 1.46634 0.26236 0.33807 1.24877 53 0.23139 2.94480 3.07165 2.22918 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 54 0.41896 2.24385 2.00743 2.28388 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 55 3.28903 4.07014 0.07793 3.88232 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 56 3.20380 0.26314 3.38664 1.85193 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 57 1.88712 2.60315 2.82195 0.33553 - U - - : 1.38629 1.38629 1.38629 1.38629 0.05742 4.32760 3.15575 1.46634 0.26236 1.09861 0.40547 58 1.65292 2.32413 0.46972 2.45963 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29775 4.29775 1.46634 0.26236 1.65402 0.21230 59 0.23050 3.23004 2.14125 3.01996 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02757 4.29775 4.29775 1.46634 0.26236 0.48217 0.96087 60 1.52075 2.02525 0.60244 2.28259 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08211 4.32760 2.72376 1.46634 0.26236 1.09861 0.40547 61 1.90171 2.34648 2.19681 0.44033 - U - - : 1.38629 1.38629 1.38629 1.38629 0.17110 4.27375 1.94258 1.46634 0.26236 1.94192 0.15482 62 0.69099 2.18617 1.52785 1.77449 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03252 4.13517 4.13517 1.46634 0.26236 2.78883 0.06346 63 1.66647 1.85413 1.78129 0.72139 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03252 4.13517 4.13517 1.46634 0.26236 0.13123 2.09569 64 2.00573 3.42716 0.23299 3.19914 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 65 3.50267 3.11364 3.64147 0.10622 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 66 3.28903 4.07014 0.07793 3.88232 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08211 4.32760 2.72376 1.46634 0.26236 1.09861 0.40547 67 0.06697 3.96957 3.71732 3.83526 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02825 4.27375 4.27375 1.46634 0.26236 0.33807 1.24877 68 2.99116 0.29653 1.99700 2.65016 - C - - : 1.38629 1.38629 1.38629 1.38629 0.07437 4.32760 2.83924 1.46634 0.26236 1.09861 0.40547 69 3.55881 0.10705 3.73483 3.01250 - C - - : 1.38629 1.38629 1.38629 1.38629 0.06689 4.28127 2.97839 1.46634 0.26236 1.86095 0.16904 70 1.82438 0.76487 2.37068 1.27343 - c - - : 1.38629 1.38629 1.38629 1.38629 0.02913 4.24352 4.24352 1.46634 0.26236 0.24788 1.51619 71 1.99024 2.63782 2.88301 0.30672 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 72 2.01534 3.43176 0.23093 3.20404 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 73 0.75775 1.83062 1.68212 1.68747 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 74 2.17307 1.78621 2.63029 0.43615 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 75 1.49373 1.01938 1.70754 1.45527 - c - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 76 1.05039 1.70734 1.64182 1.29016 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 77 0.93961 1.87436 1.73102 1.27776 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02675 4.32760 4.32760 1.46634 0.26236 1.09861 0.40547 78 1.44495 1.16904 1.71910 1.29335 - c - - : 1.38629 1.38629 1.38629 1.38629 0.06376 3.02472 4.32760 0.07045 2.68780 1.09861 0.40547 79 0.65598 1.97625 1.96372 1.59879 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //