INFERNAL1/a [1.1.5 | Sep 2023] NAME Yar_3 ACC RF02087 DESC Yellow-achaete intergenic RNA conserved region 3 STATES 205 NODES 69 CLEN 67 W 150 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 08:27:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02087/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.761719 CKSUM 2325505470 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 59.50 NC 46.80 EFP7GF -8.4953 0.71877 ECMLC 0.72172 -9.31890 -0.69983 1600000 603556 0.001988 ECMGC 0.42631 -18.75691 -5.79091 1600000 100604 0.003976 ECMLI 0.66396 -7.94176 0.48672 1600000 323274 0.003712 ECMGI 0.49150 -10.44854 -0.05859 1600000 66046 0.006056 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 150 234 -7.254 -7.461 -0.043 -5.875 IL 1 1 2 1 4 1 24 152 236 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 152 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 23 150 235 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 4 2 3 5 3 0 18 147 231 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 25 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 22 149 233 -5.633 -0.059 -5.633 0.931 -1.303 0.228 -0.952 D 7 5 3 8 3 0 18 146 230 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 24 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 1 21 148 232 -5.633 -0.059 -5.633 -0.921 0.501 0.535 -0.719 D 10 8 3 11 3 0 17 145 228 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 23 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 21 146 230 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 13 11 3 14 3 0 16 143 227 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 22 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 20 145 229 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 16 14 3 17 3 0 15 142 225 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 22 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 19 144 227 -5.633 -0.059 -5.633 -0.867 -0.956 0.026 0.939 D 19 17 3 20 3 0 15 141 224 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 21 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 18 142 226 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 22 20 3 23 3 0 14 139 222 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 20 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 18 141 224 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 25 23 3 26 3 0 13 138 221 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 19 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 17 140 223 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 28 26 3 29 3 0 12 137 219 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 19 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 16 138 221 -5.633 -0.059 -5.633 -1.331 1.101 -1.518 0.149 D 31 29 3 32 3 0 12 135 218 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 18 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 16 137 220 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 34 32 3 35 3 0 11 134 216 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 17 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 15 136 218 -5.633 -0.059 -5.633 0.019 0.970 -1.210 -0.748 D 37 35 3 38 3 0 10 133 215 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 17 142 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 14 134 217 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 40 38 3 41 3 0 10 131 213 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 16 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 13 133 215 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 43 41 3 44 3 0 9 130 212 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 15 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 13 132 214 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 46 44 3 47 3 0 8 129 210 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 14 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 12 130 212 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 49 47 3 50 3 0 7 127 209 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 14 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 11 129 211 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 52 50 3 53 3 0 7 126 207 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 13 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 11 128 209 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 55 53 3 56 3 0 6 125 206 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 12 134 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 10 126 208 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 58 56 3 59 3 0 5 123 204 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 12 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 9 125 206 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 61 59 3 62 3 0 5 122 203 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 11 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 9 124 205 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 64 62 3 65 3 0 4 120 201 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 10 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 8 122 203 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 67 65 3 68 3 0 4 119 200 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 8 121 202 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 70 68 3 71 3 0 3 118 198 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 9 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 7 120 200 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 73 71 3 74 3 0 2 116 197 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 9 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 6 118 199 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 76 74 3 77 3 0 2 115 195 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 8 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 78 77 3 80 3 1 6 117 197 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 79 77 3 80 3 0 1 114 194 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 7 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 81 80 3 83 3 1 5 115 196 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 82 80 3 83 3 0 1 112 192 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 5 114 194 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 85 83 3 86 3 0 0 111 190 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 6 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 87 86 3 89 3 1 4 113 192 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 88 86 3 89 3 0 0 109 189 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 6 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 4 111 191 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 91 89 3 92 3 0 0 108 187 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 5 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 93 92 3 95 3 1 3 110 189 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 94 92 3 95 3 0 0 106 186 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 5 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 3 108 188 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 97 95 3 98 3 0 0 105 184 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 4 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 99 98 3 101 3 1 2 107 186 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 100 98 3 101 3 0 0 104 182 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 4 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 2 106 184 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 103 101 3 104 3 0 0 102 181 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 3 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 105 104 3 107 3 1 2 104 183 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 106 104 3 107 3 0 0 101 179 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 3 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - G - - - ML 108 107 3 110 3 1 1 103 181 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 109 107 3 110 3 0 0 99 177 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 3 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 111 110 3 113 3 1 1 101 179 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 112 110 3 113 3 0 0 98 176 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 2 108 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 114 113 3 116 3 1 1 100 178 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 115 113 3 116 3 0 0 96 174 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 1 98 176 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 118 116 3 119 3 0 0 95 172 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - C - - - ML 120 119 3 122 3 1 1 97 174 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 121 119 3 122 3 0 0 93 171 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - C - - - ML 123 122 3 125 3 1 1 95 173 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 124 122 3 125 3 0 0 92 169 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - G - - - ML 126 125 3 128 3 1 1 94 171 -5.633 -0.059 -5.633 -0.106 -1.647 1.229 -1.296 D 127 125 3 128 3 0 0 90 167 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 129 128 3 131 3 1 1 92 169 -5.633 -0.059 -5.633 -1.182 0.061 -1.359 1.088 D 130 128 3 131 3 0 0 89 165 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 132 131 3 134 3 1 1 91 168 -5.633 -0.059 -5.633 -0.164 -1.680 1.262 -1.331 D 133 131 3 134 3 0 0 87 164 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - U - - - ML 135 134 3 137 3 1 1 89 166 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 136 134 3 137 3 0 0 86 162 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - C - - - ML 138 137 3 140 3 1 1 88 164 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 139 137 3 140 3 0 0 84 160 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - a - - - ML 141 140 3 143 3 1 1 86 162 -5.633 -0.059 -5.633 0.974 -1.312 0.163 -0.962 D 142 140 3 143 3 0 0 83 158 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - A - - - ML 144 143 3 146 3 1 1 85 160 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 145 143 3 146 3 0 0 81 156 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 147 146 3 149 3 1 1 83 159 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 148 146 3 149 3 0 0 79 154 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - U - - - ML 150 149 3 152 3 1 1 82 157 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 151 149 3 152 3 0 0 78 153 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - u - - - ML 153 152 3 155 3 1 1 80 155 -5.633 -0.059 -5.633 -0.867 -0.956 0.026 0.939 D 154 152 3 155 3 0 0 76 151 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 78 153 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 157 155 3 158 3 0 0 74 149 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - C - - - ML 159 158 3 161 3 1 1 77 151 -5.633 -0.059 -5.633 -2.043 1.664 -2.248 -1.403 D 160 158 3 161 3 0 0 73 147 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 162 161 3 164 3 1 1 75 149 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 163 161 3 164 3 0 0 71 145 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 165 164 3 167 3 1 1 73 147 -5.633 -0.059 -5.633 -1.174 0.115 -1.350 1.058 D 166 164 3 167 3 0 0 69 142 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 168 167 3 170 3 1 1 71 145 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 169 167 3 170 3 0 0 67 140 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - G - - - ML 171 170 3 173 3 1 1 70 143 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 172 170 3 173 3 0 0 65 138 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - U - - - ML 174 173 3 176 3 1 1 68 140 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 175 173 3 176 3 0 0 63 136 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 77 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - G - - - ML 177 176 3 179 3 1 1 66 138 -5.633 -0.059 -5.633 -1.826 -2.614 1.747 -2.332 D 178 176 3 179 3 0 0 61 133 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - a - - - ML 180 179 3 182 3 1 1 64 136 -5.633 -0.059 -5.633 0.931 -1.303 0.228 -0.952 D 181 179 3 182 3 0 0 59 130 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - U - - - ML 183 182 3 185 3 1 1 62 133 -5.633 -0.059 -5.633 -1.187 0.033 -1.364 1.104 D 184 182 3 185 3 0 0 57 128 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - U - - - ML 186 185 3 188 3 1 1 59 130 -5.633 -0.059 -5.633 -1.785 -1.437 -1.950 1.624 D 187 185 3 188 3 0 0 55 125 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 70 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - c - - - ML 189 188 3 191 3 1 1 57 127 -2.721 -0.272 -5.633 -1.032 0.933 0.011 -0.750 D 190 188 3 191 3 0 0 52 123 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 58 128 -0.985 -1.015 -13.701 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - G - - - ML 192 191 3 194 3 1 1 55 126 -5.633 -0.059 -5.633 -0.194 -1.697 1.278 -1.348 D 193 191 3 194 3 0 0 49 119 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - A - - - ML 195 194 3 197 3 1 1 52 122 -5.633 -0.059 -5.633 1.736 -2.339 -2.078 -2.098 D 196 194 3 197 3 0 0 45 114 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - G - - - ML 198 197 3 200 3 1 1 48 118 -5.633 -0.059 -5.633 -0.965 -1.280 1.122 -0.154 D 199 197 3 200 3 0 0 32 101 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - G - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -1.826 -2.614 1.747 -2.332 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Yar_3 ACC RF02087 DESC Yellow-achaete intergenic RNA conserved region 3 LENG 67 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 9 08:27:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02087/CM NSEQ 4 EFFN 2.761719 CKSUM 2325505470 STATS LOCAL MSV -8.3057 0.71877 STATS LOCAL VITERBI -8.9187 0.71877 STATS LOCAL FORWARD -3.7372 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50921 1.50642 1.17630 1.39112 1.38629 1.38629 1.38629 1.38629 0.02439 5.02812 4.04294 0.39730 1.11515 0.00000 * 1 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 2 0.74084 2.28973 1.22843 2.04606 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 3 2.02494 1.03870 1.01559 1.88457 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 4 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 5 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 6 1.98733 2.04873 1.36800 0.73517 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 7 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 8 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 9 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 10 2.30880 0.62327 2.43866 1.28319 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 11 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 12 1.37299 0.71387 2.22524 1.90471 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 13 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 14 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 15 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 16 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 17 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 18 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 19 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 20 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 21 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 22 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 23 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 24 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 25 2.62324 2.38251 2.73770 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 26 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 27 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 28 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 29 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 30 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 31 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 32 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 33 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 34 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 35 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 36 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 37 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 38 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 39 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 40 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 41 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 42 1.45965 2.52792 0.53430 2.28494 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 43 2.20592 1.34402 2.32797 0.63193 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 44 1.50005 2.55066 0.51174 2.30861 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 45 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 46 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 47 0.71108 2.29569 1.27351 2.05304 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 48 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 49 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 50 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 51 1.98733 2.04873 1.36800 0.73517 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 52 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 53 2.80207 0.23302 2.94438 2.35869 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 54 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 55 2.20007 1.30672 2.32198 0.65312 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 56 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 57 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 58 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 59 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 60 0.74084 2.28973 1.22843 2.04606 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 61 2.20926 1.36328 2.33141 0.62131 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 62 2.62324 2.38251 2.73771 0.26085 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 63 2.10142 0.73980 1.37880 1.90631 - c - - : 1.38629 1.38629 1.38629 1.38629 0.18855 1.88591 3.90434 0.70372 0.68269 1.09861 0.40547 64 1.52092 2.56246 0.50056 2.32093 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 65 0.18273 3.00756 2.82690 2.84039 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 66 2.05529 2.27342 0.60840 1.49271 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04114 3.90434 3.90434 1.46634 0.26236 1.09861 0.40547 67 2.65176 3.19784 0.17560 3.00239 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //