INFERNAL1/a [1.1.5 | Sep 2023] NAME Yar_2 ACC RF02086 DESC Yellow-achaete intergenic RNA conserved region 2 STATES 226 NODES 76 CLEN 74 W 160 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 15:21:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02086/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.642090 CKSUM 2270906541 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 84.20 NC 35.90 EFP7GF -8.7612 0.71868 ECMLC 0.69530 -9.53353 -0.68298 1600000 564614 0.002125 ECMGC 0.39981 -19.10160 -5.74419 1600000 83436 0.004794 ECMLI 0.56156 -9.44260 0.54083 1600000 326565 0.003675 ECMGI 0.40992 -11.53831 0.40591 1600000 53513 0.007475 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 160 245 -7.214 -7.421 -0.044 -5.835 IL 1 1 2 1 4 1 28 162 247 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 28 162 247 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 27 160 246 -5.598 -0.061 -5.598 -1.220 1.219 -0.536 -0.855 D 4 2 3 5 3 0 23 157 242 -11.551 -1.585 -0.585 IL 5 5 3 5 3 2 29 166 253 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 26 159 244 -5.598 -0.061 -5.598 0.656 0.344 -0.990 -0.619 D 7 5 3 8 3 0 22 156 241 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 28 165 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 26 158 243 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 10 8 3 11 3 0 21 155 239 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 27 164 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 25 156 241 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 13 11 3 14 3 0 20 153 238 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 27 163 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 24 155 240 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 16 14 3 17 3 0 20 152 236 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 26 161 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 23 154 238 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 19 17 3 20 3 0 19 151 235 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 25 160 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 23 152 237 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 22 20 3 23 3 0 18 149 234 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 24 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 22 151 235 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 25 23 3 26 3 0 17 148 232 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 24 157 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 21 150 234 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 28 26 3 29 3 0 17 147 231 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 23 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 20 149 233 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 31 29 3 32 3 0 16 145 229 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 22 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 20 147 231 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 34 32 3 35 3 0 15 144 228 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 21 154 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 19 146 230 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 37 35 3 38 3 0 14 143 226 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 21 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 18 145 228 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 40 38 3 41 3 0 14 141 225 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 20 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 17 143 227 -1.930 -0.480 -5.598 1.718 -2.251 -1.991 -2.007 D 43 41 3 44 3 0 13 140 223 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 18 143 226 -5.903 -0.024 -13.547 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - G - - - ML 45 44 3 47 3 1 17 142 225 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 46 44 3 47 3 0 12 139 222 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 18 148 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - U - - - ML 48 47 3 50 3 1 16 141 224 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 49 47 3 50 3 0 12 137 221 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 17 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - G - - - ML 51 50 3 53 3 1 15 139 223 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 52 50 3 53 3 0 11 136 219 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 17 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - U - - - ML 54 53 3 56 3 1 14 138 221 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 55 53 3 56 3 0 10 135 218 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 16 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - U - - - ML 57 56 3 59 3 1 13 137 220 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 58 56 3 59 3 0 10 133 216 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 15 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 60 59 3 62 3 1 12 135 218 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 61 59 3 62 3 0 9 132 214 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 14 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - C - - - ML 63 62 3 65 3 1 12 134 217 -5.598 -0.310 -2.534 -1.969 1.645 -2.170 -1.341 D 64 62 3 65 3 0 9 130 213 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 15 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - C - - - ML 66 65 3 68 3 1 12 133 216 -5.360 -0.072 -5.360 -1.036 1.021 -1.199 0.067 D 67 65 3 68 3 0 8 128 209 -13.339 -3.373 -0.147 IL 68 68 3 68 3 1 14 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - u - - - ML 69 68 3 71 3 1 12 132 214 -5.360 -0.217 -3.118 -0.871 0.308 -1.026 0.786 D 70 68 3 71 3 0 8 127 208 -13.339 -3.373 -0.147 IL 71 71 3 71 3 1 14 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - c - - - ML 72 71 3 74 3 1 12 131 213 -5.222 -0.079 -5.222 -0.478 0.259 -0.004 0.121 D 73 71 3 74 3 0 8 126 208 -13.783 -3.817 -0.106 IL 74 74 3 74 3 1 14 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 75 74 3 77 3 1 11 129 211 -5.222 -0.079 -5.222 -1.180 -1.712 1.526 -1.420 D 76 74 3 77 3 0 7 126 207 -13.783 -1.575 -0.590 IL 77 77 3 77 3 1 13 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 78 77 3 80 3 1 11 128 209 -1.712 -0.577 -5.360 -0.773 -0.337 1.010 -0.714 D 79 77 3 80 3 0 7 124 206 -13.339 -1.174 -0.845 IL 80 80 3 80 3 1 11 129 211 -0.629 -1.501 -15.002 0.000 0.000 0.000 0.000 [ MATL 27 ] 34 - c - - - ML 81 80 3 83 3 1 9 125 207 -5.481 -0.066 -5.481 -1.062 0.842 -1.232 0.382 D 82 80 3 83 3 0 6 123 204 -12.725 -0.505 -1.759 IL 83 83 3 83 3 1 11 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 35 - U - - - ML 84 83 3 86 3 1 9 124 205 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 85 83 3 86 3 0 4 121 202 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 10 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - G - - - ML 87 86 3 89 3 1 8 123 204 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 88 86 3 89 3 0 4 119 200 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 37 - c - - - ML 90 89 3 92 3 1 8 121 202 -5.598 -0.061 -5.598 0.367 0.662 -1.042 -0.638 D 91 89 3 92 3 0 3 118 199 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 9 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 38 - C - - - ML 93 92 3 95 3 1 7 120 201 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 94 92 3 95 3 0 2 116 197 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 9 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 39 - U - - - ML 96 95 3 98 3 1 6 118 199 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 97 95 3 98 3 0 2 115 195 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 8 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 40 - U - - - ML 99 98 3 101 3 1 6 117 197 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 100 98 3 101 3 0 1 114 194 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 7 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 41 - A - - - ML 102 101 3 104 3 1 5 116 196 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 103 101 3 104 3 0 1 112 192 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 7 122 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 42 - C - - - ML 105 104 3 107 3 1 5 114 194 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 106 104 3 107 3 0 0 111 191 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 6 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 43 - u - - - ML 108 107 3 110 3 1 4 113 193 -5.598 -0.061 -5.598 0.394 -0.869 -0.901 0.681 D 109 107 3 110 3 0 0 109 189 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 6 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 44 - A - - - ML 111 110 3 113 3 1 4 111 191 -5.598 -0.061 -5.598 1.168 -1.365 -0.194 -1.026 D 112 110 3 113 3 0 0 108 188 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 5 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 45 - C - - - ML 114 113 3 116 3 1 3 110 190 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 115 113 3 116 3 0 0 107 186 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 5 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 46 - A - - - ML 117 116 3 119 3 1 3 109 188 -5.598 -0.061 -5.598 1.113 -0.375 -1.076 -0.756 D 118 116 3 119 3 0 0 105 184 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 4 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 47 - A - - - ML 120 119 3 122 3 1 2 107 186 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 121 119 3 122 3 0 0 104 183 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 4 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 48 - A - - - ML 123 122 3 125 3 1 2 106 185 -1.996 -0.457 -5.598 1.718 -2.251 -1.991 -2.007 D 124 122 3 125 3 0 0 103 181 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 3 106 184 -5.833 -0.026 -13.476 0.000 0.000 0.000 0.000 [ MATL 42 ] 50 - G - - - ML 126 125 3 128 3 1 2 104 183 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 127 125 3 128 3 0 0 101 180 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 3 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 51 - U - - - ML 129 128 3 131 3 1 1 103 182 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 130 128 3 131 3 0 0 100 178 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 3 110 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 52 - U - - - ML 132 131 3 134 3 1 1 102 180 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 133 131 3 134 3 0 0 98 176 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 2 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 53 - A - - - ML 135 134 3 137 3 1 1 100 179 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 136 134 3 137 3 0 0 97 175 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 107 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 54 - A - - - ML 138 137 3 140 3 1 1 99 177 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 139 137 3 140 3 0 0 95 173 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 55 - U - - - ML 141 140 3 143 3 1 1 97 175 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 142 140 3 143 3 0 0 94 171 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 56 - U - - - ML 144 143 3 146 3 1 1 96 173 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 145 143 3 146 3 0 0 92 170 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 57 - G - - - ML 147 146 3 149 3 1 1 94 172 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 148 146 3 149 3 0 0 91 168 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 58 - C - - - ML 150 149 3 152 3 1 1 93 170 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 151 149 3 152 3 0 0 89 166 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 59 - a - - - ML 153 152 3 155 3 1 1 91 168 -5.598 -0.061 -5.598 0.852 -1.260 0.316 -0.907 D 154 152 3 155 3 0 0 88 164 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 60 - C - - - ML 156 155 3 158 3 1 1 90 167 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 157 155 3 158 3 0 0 86 163 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 61 - U - - - ML 159 158 3 161 3 1 1 88 165 -5.598 -0.061 -5.598 -1.716 -1.381 -1.878 1.604 D 160 158 3 161 3 0 0 85 161 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 62 - G - - - ML 162 161 3 164 3 1 1 87 163 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 163 161 3 164 3 0 0 83 159 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 94 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 63 - C - - - ML 165 164 3 167 3 1 1 85 161 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 166 164 3 167 3 0 0 81 157 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 64 - A - - - ML 168 167 3 170 3 1 1 84 159 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 169 167 3 170 3 0 0 80 155 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 65 - C - - - ML 171 170 3 173 3 1 1 82 158 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 172 170 3 173 3 0 0 78 153 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 66 - G - - - ML 174 173 3 176 3 1 1 80 156 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 175 173 3 176 3 0 0 77 151 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 67 - C - - - ML 177 176 3 179 3 1 1 79 154 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 178 176 3 179 3 0 0 75 149 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 68 - G - - - ML 180 179 3 182 3 1 1 77 152 -5.598 -0.061 -5.598 -0.046 -1.568 1.179 -1.216 D 181 179 3 182 3 0 0 73 147 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - C - - - ML 183 182 3 185 3 1 1 75 150 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 184 182 3 185 3 0 0 72 145 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 70 - A - - - ML 186 185 3 188 3 1 1 74 148 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 187 185 3 188 3 0 0 70 143 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 71 - C - - - ML 189 188 3 191 3 1 1 72 146 -5.598 -0.061 -5.598 -1.429 1.276 -1.623 -0.182 D 190 188 3 191 3 0 0 68 141 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 72 - G - - - ML 192 191 3 194 3 1 1 70 144 -5.598 -0.061 -5.598 -1.771 -2.536 1.733 -2.253 D 193 191 3 194 3 0 0 66 139 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 73 - C - - - ML 195 194 3 197 3 1 1 68 141 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 196 194 3 197 3 0 0 64 137 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 74 - C - - - ML 198 197 3 200 3 1 1 66 139 -5.598 -0.061 -5.598 -1.969 1.645 -2.170 -1.341 D 199 197 3 200 3 0 0 62 134 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 75 - A - - - ML 201 200 3 203 3 1 1 65 137 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 202 200 3 203 3 0 0 60 132 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - A - - - ML 204 203 3 206 3 1 1 62 134 -5.598 -0.061 -5.598 1.080 -0.313 -1.059 -0.735 D 205 203 3 206 3 0 0 58 129 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - g - - - ML 207 206 3 209 3 1 1 60 132 -5.598 -0.061 -5.598 0.608 -1.284 0.622 -0.927 D 208 206 3 209 3 0 0 55 126 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - A - - - ML 210 209 3 212 3 1 1 58 129 -5.598 -0.061 -5.598 1.718 -2.251 -1.991 -2.007 D 211 209 3 212 3 0 0 53 123 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - g - - - ML 213 212 3 215 3 1 1 56 126 -5.598 -0.061 -5.598 -0.748 -0.509 0.906 -0.273 D 214 212 3 215 3 0 0 49 119 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - g - - - ML 216 215 3 218 3 1 1 53 122 -5.598 -0.061 -5.598 -0.322 -0.641 0.979 -0.766 D 217 215 3 218 3 0 0 45 114 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 81 - C - - - ML 219 218 3 221 3 1 1 48 118 -5.598 -0.061 -5.598 -1.429 1.276 -1.623 -0.182 D 220 218 3 221 3 0 0 32 101 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - a - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 0.300 -0.082 -0.203 -0.065 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Yar_2 ACC RF02086 DESC Yellow-achaete intergenic RNA conserved region 2 LENG 74 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sun Jul 7 15:21:29 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02086/CM NSEQ 7 EFFN 2.642090 CKSUM 2270906541 STATS LOCAL MSV -8.4465 0.71868 STATS LOCAL VITERBI -9.0537 0.71868 STATS LOCAL FORWARD -3.4401 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31999 1.34720 1.45803 1.42628 1.38629 1.38629 1.38629 1.38629 0.02509 5.00025 4.01508 0.39730 1.11515 0.00000 * 1 2.23194 0.54118 1.75766 1.97925 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 2 0.93157 1.14762 2.07229 1.81537 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 3 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 4 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 5 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 6 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 7 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 8 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 9 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 10 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 11 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 12 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 13 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 14 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.33271 1.33801 3.87993 0.01686 4.09134 1.09861 0.40547 15 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 16 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 17 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 18 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 19 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 20 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 21 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.21481 3.87993 1.75645 1.46634 0.26236 1.09861 0.40547 22 2.10418 0.67875 2.21743 1.33972 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04993 3.71505 3.71505 1.46634 0.26236 2.33797 0.10150 23 1.98998 1.17287 2.09739 0.84154 - u - - : 1.38629 1.38629 1.38629 1.38629 0.15031 3.71505 2.16107 1.46634 0.26236 2.33797 0.10150 24 1.71776 1.20672 1.38874 1.30208 - c - - : 1.38629 1.38629 1.38629 1.38629 0.05506 3.61981 3.61981 1.46634 0.26236 2.64550 0.07361 25 2.20433 2.57275 0.32864 2.37032 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05506 3.61981 3.61981 1.46634 0.26236 1.09152 0.40903 26 1.92176 1.62010 0.68653 1.88092 - G - - : 1.38629 1.38629 1.38629 1.38629 0.39971 1.18701 3.71505 1.04066 0.43575 0.81398 0.58536 27 2.12225 0.80287 2.24034 1.12154 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04583 3.79888 3.79888 1.46634 0.26236 0.35018 1.21931 28 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 29 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 30 1.13214 0.92718 2.10872 1.82887 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 31 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 32 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 33 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 34 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 35 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 36 1.11344 1.98882 2.01048 0.91432 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 37 0.57678 2.33244 1.52097 2.09771 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 38 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 39 0.61485 1.64651 2.13228 1.91060 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 40 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 41 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.31650 1.38369 3.87993 0.01770 4.04277 1.09861 0.40547 42 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 43 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 44 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 45 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 46 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 47 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 48 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 49 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 50 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 51 0.79599 2.25989 1.16731 2.01516 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 52 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 53 2.57568 2.34319 2.68800 0.27462 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 54 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 55 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 56 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 57 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 58 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 59 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 60 1.41835 2.47305 0.56924 2.22931 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 61 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 62 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 63 2.37687 0.50150 2.51100 1.51253 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 64 2.61355 3.14388 0.18494 2.94773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 65 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 66 2.75133 0.24600 2.89060 2.31575 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 67 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 68 0.63764 1.60320 2.12057 1.89548 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 69 0.96469 2.27627 0.95514 2.02893 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 70 0.19558 2.94634 2.76627 2.77719 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 71 1.90479 1.73892 0.75809 1.57563 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 72 1.60933 1.83058 0.70788 1.91753 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 73 2.37687 0.50150 2.51100 1.51253 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04218 3.87993 3.87993 1.46634 0.26236 1.09861 0.40547 74 1.17868 1.44317 1.52690 1.43158 - a - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //