INFERNAL1/a [1.1.5 | Sep 2023] NAME Yar_1 ACC RF02085 DESC Yellow-achaete intergenic RNA conserved region 1 STATES 226 NODES 76 CLEN 74 W 163 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 13:40:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02085/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.784180 CKSUM 272303189 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 61.20 NC 35.80 EFP7GF -9.5105 0.71867 ECMLC 0.65331 -8.98902 -0.26582 1600000 358266 0.003349 ECMGC 0.42131 -16.38294 -4.18036 1600000 68357 0.005852 ECMLI 0.58118 -7.81324 1.22373 1600000 229160 0.005237 ECMGI 0.46140 -9.60062 0.92520 1600000 51436 0.007777 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 163 263 -7.558 -7.765 -0.035 -6.180 IL 1 1 2 1 4 3 32 165 265 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 31 165 265 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 3 31 163 263 -5.903 -0.049 -5.903 0.990 -0.533 -1.078 -0.236 D 4 2 3 5 3 0 26 160 261 -11.551 -1.585 -0.585 IL 5 5 3 5 3 4 32 169 269 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 3 30 162 262 -5.903 -0.049 -5.903 0.951 -1.041 -0.356 -0.322 D 7 5 3 8 3 0 26 159 259 -11.551 -1.585 -0.585 IL 8 8 3 8 3 4 32 168 268 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 2 29 161 261 -5.903 -0.049 -5.903 -0.334 0.698 -0.508 -0.182 D 10 8 3 11 3 0 25 158 258 -11.551 -1.585 -0.585 IL 11 11 3 11 3 3 31 167 267 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 2 28 160 260 -5.903 -0.049 -5.903 -0.454 0.316 0.490 -0.689 D 13 11 3 14 3 0 24 157 257 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 30 165 266 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 2 27 158 259 -5.903 -0.049 -5.903 0.628 -0.160 -0.509 -0.223 D 16 14 3 17 3 0 24 156 256 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 29 164 264 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 1 27 157 258 -5.903 -0.129 -3.855 -0.473 -0.648 0.935 -0.455 D 19 17 3 20 3 0 23 154 255 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 29 163 263 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - u - - - ML 21 20 3 23 3 1 26 156 256 -5.825 -0.052 -5.825 -0.825 0.093 -0.425 0.700 D 22 20 3 23 3 0 22 153 254 -12.583 -2.618 -0.257 IL 23 23 3 23 3 2 28 162 262 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 25 155 255 -5.825 -0.052 -5.825 -0.479 -1.219 -1.432 1.312 D 25 23 3 26 3 0 22 153 253 -12.583 -0.569 -1.618 IL 26 26 3 26 3 2 27 161 261 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 25 154 254 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 28 26 3 29 3 0 20 151 251 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 26 159 260 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 24 153 253 -5.903 -0.049 -5.903 -0.648 1.126 -1.439 -0.302 D 31 29 3 32 3 0 19 150 250 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 26 158 259 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 23 151 252 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 34 32 3 35 3 0 18 148 249 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 25 157 257 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 22 150 251 -5.903 -0.049 -5.903 1.844 -3.042 -2.750 -2.825 D 37 35 3 38 3 0 18 147 248 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 24 156 256 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 22 149 249 -5.903 -0.049 -5.903 1.844 -3.042 -2.750 -2.825 D 40 38 3 41 3 0 17 146 246 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 23 155 255 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 21 148 248 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 43 41 3 44 3 0 16 145 245 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 23 154 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 20 147 247 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 46 44 3 47 3 0 16 144 244 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 22 152 253 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 19 145 246 -5.903 -0.049 -5.903 -1.728 -0.614 -1.929 1.476 D 49 47 3 50 3 0 15 142 243 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 21 151 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 51 50 3 53 3 1 19 144 245 -5.903 -0.049 -5.903 -0.062 0.017 -0.989 0.610 D 52 50 3 53 3 0 14 141 242 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 20 150 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 18 143 243 -5.903 -0.049 -5.903 1.328 -0.534 -1.531 -1.141 D 55 53 3 56 3 0 13 140 240 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 20 149 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 17 142 242 -5.903 -0.049 -5.903 -1.519 0.108 -1.710 1.181 D 58 56 3 59 3 0 13 139 239 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 19 148 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 16 141 241 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 61 59 3 62 3 0 12 138 238 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 18 146 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - u - - - ML 63 62 3 65 3 1 16 139 240 -5.903 -0.049 -5.903 -1.485 0.556 -1.675 0.895 D 64 62 3 65 3 0 11 137 237 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 17 145 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 15 138 239 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 67 65 3 68 3 0 11 135 236 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 16 144 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 14 137 237 -5.903 -0.049 -5.903 1.535 -2.044 -0.844 -1.729 D 70 68 3 71 3 0 10 134 235 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 15 143 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 13 136 236 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 73 71 3 74 3 0 10 133 233 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 15 142 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 12 135 235 -5.903 -0.049 -5.903 1.844 -3.042 -2.750 -2.825 D 76 74 3 77 3 0 9 132 232 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 14 140 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 11 134 234 -5.903 -0.049 -5.903 -0.533 1.118 -1.417 -0.388 D 79 77 3 80 3 0 8 131 231 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 13 139 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 10 132 233 -5.903 -0.258 -2.765 -1.429 -2.017 1.524 -0.984 D 82 80 3 83 3 0 8 130 231 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 12 138 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - g - - - ML 84 83 3 86 3 1 10 131 232 -1.482 -0.683 -5.701 -0.982 0.385 0.692 -0.805 D 85 83 3 86 3 0 7 130 230 -13.400 -0.295 -2.434 IL 86 86 3 86 3 1 10 131 231 -6.483 -0.016 -14.127 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 87 86 3 89 3 1 9 130 230 -5.903 -0.049 -5.903 -2.602 1.776 -2.836 -1.880 D 88 86 3 89 3 0 5 127 228 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 10 136 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - g - - - ML 90 89 3 92 3 1 8 129 229 -5.903 -0.148 -3.634 -1.061 -1.252 0.764 0.489 D 91 89 3 92 3 0 5 126 227 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 10 135 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 93 92 3 95 3 1 8 128 228 -5.808 -0.052 -5.808 -1.560 -0.514 -1.754 1.414 D 94 92 3 95 3 0 4 126 226 -12.736 -0.501 -1.770 IL 95 95 3 95 3 1 9 133 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - U - - - ML 96 95 3 98 3 1 7 126 227 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 97 95 3 98 3 0 3 123 224 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 9 132 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 7 125 226 -5.903 -0.049 -5.903 1.844 -3.042 -2.750 -2.825 D 100 98 3 101 3 0 2 122 223 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 8 131 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 102 101 3 104 3 1 6 124 224 -5.903 -0.049 -5.903 1.844 -3.042 -2.750 -2.825 D 103 101 3 104 3 0 1 121 222 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 8 130 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 105 104 3 107 3 1 6 123 223 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 106 104 3 107 3 0 1 120 220 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 7 129 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - u - - - ML 108 107 3 110 3 1 5 122 222 -5.903 -0.049 -5.903 0.444 -1.117 -1.180 0.797 D 109 107 3 110 3 0 0 119 219 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 6 127 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - - - ML 111 110 3 113 3 1 5 120 221 -5.903 -0.049 -5.903 -0.557 -1.319 -1.558 1.367 D 112 110 3 113 3 0 0 117 218 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 6 126 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - - - ML 114 113 3 116 3 1 4 119 220 -5.903 -0.049 -5.903 -2.043 1.525 -2.275 -0.574 D 115 113 3 116 3 0 0 116 217 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 5 125 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 117 116 3 119 3 1 4 118 219 -5.903 -0.049 -5.903 1.844 -3.042 -2.750 -2.825 D 118 116 3 119 3 0 0 115 216 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 5 124 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - c - - - ML 120 119 3 122 3 1 3 117 217 -5.903 -0.049 -5.903 0.399 0.409 -1.031 -0.210 D 121 119 3 122 3 0 0 114 214 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 4 123 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 123 122 3 125 3 1 3 116 216 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 124 122 3 125 3 0 0 113 213 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 4 121 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 126 125 3 128 3 1 2 115 215 -5.903 -0.049 -5.903 -2.602 1.776 -2.836 -1.880 D 127 125 3 128 3 0 0 111 212 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 4 120 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - U - - - ML 129 128 3 131 3 1 2 113 214 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 130 128 3 131 3 0 0 110 211 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 3 119 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - G - - - ML 132 131 3 134 3 1 2 112 213 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 133 131 3 134 3 0 0 109 209 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 3 118 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - C - - - ML 135 134 3 137 3 1 1 111 211 -5.903 -0.049 -5.903 -2.602 1.776 -2.836 -1.880 D 136 134 3 137 3 0 0 107 208 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 117 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - C - - - ML 138 137 3 140 3 1 1 110 210 -5.903 -0.049 -5.903 -2.602 1.776 -2.836 -1.880 D 139 137 3 140 3 0 0 105 206 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 2 115 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - A - - - ML 141 140 3 143 3 1 1 109 209 -5.903 -0.049 -5.903 1.844 -3.042 -2.750 -2.825 D 142 140 3 143 3 0 0 102 202 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 2 114 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - U - - - ML 144 143 3 146 3 1 1 107 208 -3.382 -0.172 -5.903 -2.338 -1.894 -2.523 1.748 D 145 143 3 146 3 0 0 90 177 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 119 220 -0.264 -2.580 -14.809 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - U - - - ML 147 146 3 149 3 1 1 92 168 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 148 146 3 149 3 0 0 88 165 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 57 - U - - - ML 150 149 3 152 3 1 1 90 167 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 151 149 3 152 3 0 0 87 163 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - g - - - ML 153 152 3 155 3 1 1 89 165 -5.903 -0.049 -5.903 0.660 -1.644 0.757 -1.287 D 154 152 3 155 3 0 0 86 161 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - U - - - ML 156 155 3 158 3 1 1 87 163 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 157 155 3 158 3 0 0 84 160 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 60 - G - - - ML 159 158 3 161 3 1 1 86 162 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 160 158 3 161 3 0 0 83 158 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 61 - G - - - ML 162 161 3 164 3 1 1 85 160 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 163 161 3 164 3 0 0 81 156 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - C - - - ML 165 164 3 167 3 1 1 83 158 -5.903 -0.049 -5.903 -2.602 1.776 -2.836 -1.880 D 166 164 3 167 3 0 0 80 154 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - U - - - ML 168 167 3 170 3 1 1 82 157 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 169 167 3 170 3 0 0 78 153 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - U - - - ML 171 170 3 173 3 1 1 80 155 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 172 170 3 173 3 0 0 76 151 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - C - - - ML 174 173 3 176 3 1 1 78 153 -5.903 -0.049 -5.903 -2.602 1.776 -2.836 -1.880 D 175 173 3 176 3 0 0 75 149 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - C - - - ML 177 176 3 179 3 1 1 77 151 -5.903 -0.049 -5.903 -2.602 1.776 -2.836 -1.880 D 178 176 3 179 3 0 0 73 147 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - G - - - ML 180 179 3 182 3 1 1 75 149 -5.903 -0.049 -5.903 -2.241 -3.196 1.827 -2.921 D 181 179 3 182 3 0 0 72 145 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - U - - - ML 183 182 3 185 3 1 1 74 147 -5.903 -0.049 -5.903 -1.665 -0.440 -1.864 1.418 D 184 182 3 185 3 0 0 70 143 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - - - ML 186 185 3 188 3 1 1 72 146 -5.903 -0.049 -5.903 -2.338 -1.894 -2.523 1.748 D 187 185 3 188 3 0 0 68 141 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 70 - U - - - ML 189 188 3 191 3 1 1 70 144 -5.903 -0.049 -5.903 -1.665 -0.440 -1.864 1.418 D 190 188 3 191 3 0 0 66 139 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 71 - c - - - ML 192 191 3 194 3 1 1 69 142 -5.903 -0.049 -5.903 -1.536 0.871 -1.730 0.609 D 193 191 3 194 3 0 0 65 137 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 78 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 72 - G - - - ML 195 194 3 197 3 1 1 67 139 -5.903 -0.049 -5.903 -1.378 -1.914 1.473 -0.799 D 196 194 3 197 3 0 0 63 135 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 73 - u - - - ML 198 197 3 200 3 1 1 65 137 -5.903 -0.049 -5.903 -0.831 0.352 -0.203 0.370 D 199 197 3 200 3 0 0 61 133 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 74 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 74 - a - - - ML 201 200 3 203 3 1 1 63 135 -5.903 -0.049 -5.903 0.757 -0.993 -0.068 -0.229 D 202 200 3 203 3 0 0 59 130 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 75 - u - - - ML 204 203 3 206 3 1 1 61 133 -5.903 -0.135 -3.789 -0.881 -0.521 -0.208 0.922 D 205 203 3 206 3 0 0 57 128 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 76 - g - - - ML 207 206 3 209 3 1 1 59 131 -5.820 -0.052 -5.820 -0.188 -0.328 0.786 -0.734 D 208 206 3 209 3 0 0 54 125 -12.628 -2.662 -0.248 IL 209 209 3 209 3 1 1 70 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 77 - A - - - ML 210 209 3 212 3 1 1 57 128 -5.820 -0.052 -5.820 1.358 -1.718 -0.416 -1.385 D 211 209 3 212 3 0 0 53 124 -12.628 -0.548 -1.662 IL 212 212 3 212 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 78 - g - - - ML 213 212 3 215 3 1 1 55 125 -5.903 -0.049 -5.903 -0.437 -1.239 0.957 -0.158 D 214 212 3 215 3 0 0 48 118 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - U - - - ML 216 215 3 218 3 1 1 52 121 -5.903 -0.049 -5.903 -1.025 -0.532 -0.630 1.118 D 217 215 3 218 3 0 0 44 113 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - u - - - ML 219 218 3 221 3 1 1 48 117 -5.903 -0.049 -5.903 0.181 -0.511 -0.992 0.733 D 220 218 3 221 3 0 0 32 101 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 81 - u - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 0.173 -0.911 -0.069 0.472 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Yar_1 ACC RF02085 DESC Yellow-achaete intergenic RNA conserved region 1 LENG 74 MAXL 163 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sun Jul 7 13:40:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02085/CM NSEQ 10 EFFN 3.784180 CKSUM 272303189 STATS LOCAL MSV -8.7605 0.71867 STATS LOCAL VITERBI -9.0776 0.71867 STATS LOCAL FORWARD -3.9770 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.48294 1.52282 1.49800 1.10456 1.38629 1.38629 1.38629 1.38629 0.01971 5.23909 4.25392 0.39730 1.11515 0.00000 * 1 0.70028 1.75555 2.13348 1.54968 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 2 0.72740 2.10820 1.63290 1.60935 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 3 1.61804 0.90280 1.73818 1.51213 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 4 1.70067 1.16693 1.04670 1.86419 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 5 0.95120 1.49726 1.73883 1.54059 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 6 1.71396 1.83542 0.73823 1.70186 - g - - : 1.38629 1.38629 1.38629 1.38629 0.08973 4.09170 2.67200 1.46634 0.26236 1.09861 0.40547 7 1.95805 1.32214 1.68073 0.90124 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 1.81416 0.17790 8 1.71837 2.23099 2.37882 0.47713 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03591 4.03788 4.03788 1.46634 0.26236 0.39445 1.12101 9 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 10 1.83562 0.60612 2.38386 1.59539 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 11 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 12 0.10846 3.49489 3.29267 3.34442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 13 0.10846 3.49489 3.29267 3.34442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 14 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 15 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 16 2.58386 1.81190 2.72344 0.36309 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 17 1.42942 1.37422 2.07194 0.96345 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 18 0.46601 1.75638 2.44755 2.17748 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 19 2.43924 1.31160 2.57173 0.56743 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 20 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 21 2.41584 1.00111 2.54746 0.76581 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 22 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 23 0.32200 2.80294 1.97151 2.58461 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 24 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 25 0.10846 3.49489 3.29267 3.34442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 26 1.75568 0.61141 2.36868 1.65538 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 27 2.37669 2.78409 0.32997 2.06822 - G - - : 1.38629 1.38629 1.38629 1.38629 0.17895 4.09170 1.91637 1.46634 0.26236 1.09861 0.40547 28 2.06694 1.11926 0.90690 1.94398 - g - - : 1.38629 1.38629 1.38629 1.38629 0.47361 1.02713 3.95195 0.01124 4.49372 0.20469 1.68688 29 3.19007 0.15558 3.35219 2.68961 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 30 2.12198 2.25382 0.85706 1.04754 - g - - : 1.38629 1.38629 1.38629 1.38629 0.10233 4.09170 2.51878 1.46634 0.26236 1.09861 0.40547 31 2.46785 1.74237 2.60188 0.40647 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03635 4.02573 4.02573 1.46634 0.26236 0.34704 1.22682 32 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 33 0.10846 3.49489 3.29267 3.34442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 34 0.10846 3.49489 3.29267 3.34442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 35 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 36 1.07855 2.16019 2.20402 0.83414 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 37 1.77259 2.30085 2.46626 0.43846 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 38 2.80218 0.32892 2.96340 1.78393 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 39 0.10846 3.49489 3.29267 3.34442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 40 1.10997 1.10284 2.10060 1.53190 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 41 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 42 3.19007 0.15558 3.35219 2.68961 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 43 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 44 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 45 3.19007 0.15558 3.35219 2.68961 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 46 3.19007 0.15558 3.35219 2.68961 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 47 0.10846 3.49489 3.29267 3.34442 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 48 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.11949 2.34426 4.09170 1.78828 0.18302 1.09861 0.40547 49 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 50 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 51 0.92855 2.52589 0.86179 2.27806 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 52 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 53 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 54 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 55 3.19007 0.15558 3.35219 2.68960 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 56 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 57 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 58 3.19007 0.15558 3.35219 2.68961 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 59 3.19007 0.15558 3.35219 2.68961 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 60 2.93963 3.60175 0.12010 3.41107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 61 2.54058 1.69123 2.67816 0.40317 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 62 3.00695 2.69927 3.13485 0.17460 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 63 2.54058 1.69123 2.67816 0.40317 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 64 2.45107 0.78290 2.58526 0.96405 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 65 2.34146 2.71296 0.36561 1.94001 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 66 1.96259 1.14204 1.52685 1.12973 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 67 0.86129 2.07481 1.43313 1.54532 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 68 1.99713 1.74748 1.53031 0.74740 - u - - : 1.38629 1.38629 1.38629 1.38629 0.09329 4.09170 2.62612 1.46634 0.26236 1.09861 0.40547 69 1.51633 1.61351 0.84177 1.89479 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03603 4.03445 4.03445 1.46634 0.26236 1.84531 0.17195 70 0.44492 2.57691 1.67459 2.34621 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03603 4.03445 4.03445 1.46634 0.26236 0.37973 1.15217 71 1.68923 2.24496 0.72305 1.49549 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 72 2.09704 1.75501 1.82300 0.61113 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 73 1.26114 1.74035 2.07378 0.87827 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 74 1.26605 2.01753 1.43406 1.05920 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //