INFERNAL1/a [1.1.4 | Dec 2020] NAME Yar_1 ACC RF02085 DESC Yellow-achaete intergenic RNA conserved region 1 STATES 226 NODES 76 CLEN 74 W 164 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:48:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.813477 CKSUM 272303189 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 77.90 NC 35.00 EFP7GF -9.5367 0.71867 ECMLC 0.66899 -8.77124 -0.21671 1600000 366947 0.003270 ECMGC 0.41347 -16.54102 -4.13404 1600000 67603 0.005917 ECMLI 0.57712 -7.86739 1.22001 1600000 227429 0.005276 ECMGI 0.45758 -9.65202 0.95414 1600000 51256 0.007804 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 164 265 -7.566 -7.773 -0.034 -6.187 IL 1 1 2 1 4 3 32 166 267 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 31 166 267 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 3 31 165 265 -5.910 -0.049 -5.910 1.012 -0.544 -1.096 -0.269 D 4 2 3 5 3 0 26 162 262 -11.551 -1.585 -0.585 IL 5 5 3 5 3 4 32 170 271 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 2 30 163 264 -5.910 -0.049 -5.910 0.975 -1.055 -0.396 -0.335 D 7 5 3 8 3 0 26 160 261 -11.551 -1.585 -0.585 IL 8 8 3 8 3 3 32 169 270 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 2 29 162 263 -5.910 -0.049 -5.910 -0.175 0.617 -0.498 -0.197 D 10 8 3 11 3 0 25 159 260 -11.551 -1.585 -0.585 IL 11 11 3 11 3 3 31 168 269 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 2 28 161 262 -5.910 -0.049 -5.910 -0.479 0.401 0.424 -0.689 D 13 11 3 14 3 0 24 158 259 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 30 167 267 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 2 27 160 260 -5.910 -0.049 -5.910 0.665 -0.198 -0.533 -0.232 D 16 14 3 17 3 0 24 157 258 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 29 165 266 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 1 27 159 259 -5.910 -0.124 -3.929 -0.471 -0.435 0.842 -0.422 D 19 17 3 20 3 0 23 156 257 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 29 164 265 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - u - - - ML 21 20 3 23 3 1 26 158 258 -5.838 -0.051 -5.838 -0.846 0.047 -0.467 0.755 D 22 20 3 23 3 0 22 155 255 -12.538 -2.573 -0.266 IL 23 23 3 23 3 2 28 163 264 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 25 156 257 -5.838 -0.051 -5.838 -0.538 -1.247 -1.476 1.340 D 25 23 3 26 3 0 22 154 255 -12.538 -0.592 -1.573 IL 26 26 3 26 3 1 27 162 263 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 25 155 256 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 28 26 3 29 3 0 20 152 253 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 26 161 261 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 24 154 255 -5.910 -0.049 -5.910 -0.703 1.166 -1.491 -0.348 D 31 29 3 32 3 0 19 151 252 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 26 160 260 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 23 153 253 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 34 32 3 35 3 0 18 150 250 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 25 158 259 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 22 152 252 -5.910 -0.049 -5.910 1.846 -3.061 -2.768 -2.844 D 37 35 3 38 3 0 18 149 249 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 24 157 258 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 22 150 251 -5.910 -0.049 -5.910 1.846 -3.061 -2.768 -2.844 D 40 38 3 41 3 0 17 147 248 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 23 156 257 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 21 149 250 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 43 41 3 44 3 0 16 146 247 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 23 155 256 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 20 148 249 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 46 44 3 47 3 0 16 145 246 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 22 154 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 19 147 248 -5.910 -0.049 -5.910 -1.753 -0.654 -1.955 1.491 D 49 47 3 50 3 0 15 144 245 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 21 153 253 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 51 50 3 53 3 1 19 146 246 -5.910 -0.049 -5.910 0.055 -0.033 -0.973 0.560 D 52 50 3 53 3 0 14 143 243 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 20 151 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 18 145 245 -5.910 -0.049 -5.910 1.220 -0.281 -1.452 -1.053 D 55 53 3 56 3 0 13 142 242 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 20 150 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 17 143 244 -5.910 -0.049 -5.910 -1.539 0.055 -1.731 1.212 D 58 56 3 59 3 0 13 140 241 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 19 149 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 16 142 243 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 61 59 3 62 3 0 12 139 240 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 18 148 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - u - - - ML 63 62 3 65 3 1 16 141 242 -5.910 -0.049 -5.910 -1.501 0.643 -1.692 0.828 D 64 62 3 65 3 0 11 138 239 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 17 147 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 15 140 240 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 67 65 3 68 3 0 11 137 237 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 16 145 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 14 139 239 -5.910 -0.049 -5.910 1.555 -2.087 -0.906 -1.775 D 70 68 3 71 3 0 10 136 236 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 15 144 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 13 137 238 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 73 71 3 74 3 0 10 135 235 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 15 143 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 12 136 237 -5.910 -0.049 -5.910 1.846 -3.061 -2.768 -2.844 D 76 74 3 77 3 0 9 133 234 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 14 142 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 11 135 236 -5.910 -0.049 -5.910 -0.590 1.159 -1.469 -0.431 D 79 77 3 80 3 0 8 133 233 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 13 141 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 10 134 234 -5.910 -0.243 -2.851 -1.451 -2.057 1.540 -1.043 D 82 80 3 83 3 0 8 132 232 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 12 140 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - g - - - ML 84 83 3 86 3 1 10 133 233 -1.567 -0.636 -5.722 -1.005 0.302 0.776 -0.845 D 85 83 3 86 3 0 7 131 232 -13.336 -0.310 -2.370 IL 86 86 3 86 3 1 10 132 233 -6.417 -0.017 -14.060 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 87 86 3 89 3 1 9 131 232 -5.910 -0.049 -5.910 -2.617 1.778 -2.851 -1.893 D 88 86 3 89 3 0 5 129 230 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 10 137 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - g - - - ML 90 89 3 92 3 1 8 130 231 -5.910 -0.141 -3.708 -1.079 -1.284 0.831 0.420 D 91 89 3 92 3 0 4 128 229 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 10 136 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 93 92 3 95 3 1 8 129 230 -5.821 -0.052 -5.821 -1.594 -0.559 -1.789 1.433 D 94 92 3 95 3 0 4 127 228 -12.689 -0.521 -1.723 IL 95 95 3 95 3 1 9 135 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - U - - - ML 96 95 3 98 3 1 7 128 229 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 97 95 3 98 3 0 3 125 226 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 9 134 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 7 127 227 -5.910 -0.049 -5.910 1.846 -3.061 -2.768 -2.844 D 100 98 3 101 3 0 2 124 224 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 8 132 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 102 101 3 104 3 1 6 126 226 -5.910 -0.049 -5.910 1.846 -3.061 -2.768 -2.844 D 103 101 3 104 3 0 1 123 223 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 8 131 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 105 104 3 107 3 1 6 124 225 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 106 104 3 107 3 0 1 121 222 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 7 130 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - u - - - ML 108 107 3 110 3 1 5 123 224 -5.910 -0.049 -5.910 0.522 -1.120 -1.179 0.733 D 109 107 3 110 3 0 0 120 221 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 6 129 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - U - - - ML 111 110 3 113 3 1 5 122 223 -5.910 -0.049 -5.910 -0.288 -1.251 -1.427 1.256 D 112 110 3 113 3 0 0 119 220 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 6 128 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - - - ML 114 113 3 116 3 1 4 121 222 -5.910 -0.049 -5.910 -2.075 1.542 -2.310 -0.622 D 115 113 3 116 3 0 0 118 219 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 5 127 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 117 116 3 119 3 1 4 120 220 -5.910 -0.049 -5.910 1.846 -3.061 -2.768 -2.844 D 118 116 3 119 3 0 0 117 217 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 5 125 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - a - - - ML 120 119 3 122 3 1 3 118 219 -5.910 -0.049 -5.910 0.471 0.353 -1.034 -0.238 D 121 119 3 122 3 0 0 115 216 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 4 124 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 123 122 3 125 3 1 3 117 218 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 124 122 3 125 3 0 0 114 215 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 4 123 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 126 125 3 128 3 1 2 116 217 -5.910 -0.049 -5.910 -2.617 1.778 -2.851 -1.893 D 127 125 3 128 3 0 0 113 214 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 4 122 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - U - - - ML 129 128 3 131 3 1 2 115 216 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 130 128 3 131 3 0 0 112 212 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 3 121 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - G - - - ML 132 131 3 134 3 1 2 114 214 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 133 131 3 134 3 0 0 110 211 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 3 119 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - C - - - ML 135 134 3 137 3 1 1 113 213 -5.910 -0.049 -5.910 -2.617 1.778 -2.851 -1.893 D 136 134 3 137 3 0 0 109 209 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 118 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - C - - - ML 138 137 3 140 3 1 1 111 212 -5.910 -0.049 -5.910 -2.617 1.778 -2.851 -1.893 D 139 137 3 140 3 0 0 107 207 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 2 117 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - A - - - ML 141 140 3 143 3 1 1 110 211 -5.910 -0.049 -5.910 1.846 -3.061 -2.768 -2.844 D 142 140 3 143 3 0 0 103 204 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 2 116 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - U - - - ML 144 143 3 146 3 1 1 109 210 -2.953 -0.227 -5.910 -2.353 -1.906 -2.538 1.751 D 145 143 3 146 3 0 0 90 177 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 119 220 -0.264 -2.581 -15.318 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - U - - - ML 147 146 3 149 3 1 1 92 168 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 148 146 3 149 3 0 0 88 165 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 57 - U - - - ML 150 149 3 152 3 1 1 90 167 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 151 149 3 152 3 0 0 87 163 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - a - - - ML 153 152 3 155 3 1 1 89 165 -5.910 -0.049 -5.910 0.730 -1.634 0.684 -1.277 D 154 152 3 155 3 0 0 86 161 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - U - - - ML 156 155 3 158 3 1 1 87 163 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 157 155 3 158 3 0 0 84 160 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 60 - G - - - ML 159 158 3 161 3 1 1 86 162 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 160 158 3 161 3 0 0 83 158 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 61 - G - - - ML 162 161 3 164 3 1 1 84 160 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 163 161 3 164 3 0 0 81 156 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 62 - C - - - ML 165 164 3 167 3 1 1 83 158 -5.910 -0.049 -5.910 -2.617 1.778 -2.851 -1.893 D 166 164 3 167 3 0 0 79 154 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 63 - U - - - ML 168 167 3 170 3 1 1 81 156 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 169 167 3 170 3 0 0 78 153 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 64 - U - - - ML 171 170 3 173 3 1 1 80 155 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 172 170 3 173 3 0 0 76 151 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - C - - - ML 174 173 3 176 3 1 1 78 153 -5.910 -0.049 -5.910 -2.617 1.778 -2.851 -1.893 D 175 173 3 176 3 0 0 75 149 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - C - - - ML 177 176 3 179 3 1 1 77 151 -5.910 -0.049 -5.910 -2.617 1.778 -2.851 -1.893 D 178 176 3 179 3 0 0 73 147 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - G - - - ML 180 179 3 182 3 1 1 75 149 -5.910 -0.049 -5.910 -2.252 -3.211 1.828 -2.936 D 181 179 3 182 3 0 0 72 145 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - U - - - ML 183 182 3 185 3 1 1 74 147 -5.910 -0.049 -5.910 -1.601 -0.204 -1.797 1.330 D 184 182 3 185 3 0 0 70 143 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - U - - - ML 186 185 3 188 3 1 1 72 145 -5.910 -0.049 -5.910 -2.353 -1.906 -2.538 1.751 D 187 185 3 188 3 0 0 68 141 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 70 - U - - - ML 189 188 3 191 3 1 1 70 144 -5.910 -0.049 -5.910 -1.601 -0.204 -1.797 1.330 D 190 188 3 191 3 0 0 66 139 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 71 - c - - - ML 192 191 3 194 3 1 1 69 141 -5.910 -0.049 -5.910 -1.526 0.795 -1.718 0.690 D 193 191 3 194 3 0 0 65 137 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 78 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 72 - G - - - ML 195 194 3 197 3 1 1 67 139 -5.910 -0.049 -5.910 -1.298 -1.741 1.365 -0.476 D 196 194 3 197 3 0 0 63 135 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 73 - c - - - ML 198 197 3 200 3 1 1 65 137 -5.910 -0.049 -5.910 -0.850 0.423 -0.248 0.337 D 199 197 3 200 3 0 0 61 133 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 74 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 74 - a - - - ML 201 200 3 203 3 1 1 63 135 -5.910 -0.049 -5.910 0.698 -0.963 -0.127 -0.075 D 202 200 3 203 3 0 0 59 130 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 75 - u - - - ML 204 203 3 206 3 1 1 61 133 -5.910 -0.129 -3.858 -0.899 -0.550 -0.238 0.951 D 205 203 3 206 3 0 0 57 128 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 76 - g - - - ML 207 206 3 209 3 1 1 59 130 -5.833 -0.052 -5.833 -0.222 -0.393 0.846 -0.777 D 208 206 3 209 3 0 0 54 125 -12.586 -2.620 -0.256 IL 209 209 3 209 3 1 1 70 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 77 - A - - - ML 210 209 3 212 3 1 1 57 128 -5.833 -0.052 -5.833 1.392 -1.766 -0.488 -1.436 D 211 209 3 212 3 0 0 53 124 -12.586 -0.568 -1.620 IL 212 212 3 212 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 78 - g - - - ML 213 212 3 215 3 1 1 55 125 -5.910 -0.049 -5.910 -0.437 -1.167 0.854 0.011 D 214 212 3 215 3 0 0 48 118 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 79 - U - - - ML 216 215 3 218 3 1 1 52 121 -5.910 -0.049 -5.910 -1.057 -0.565 -0.676 1.149 D 217 215 3 218 3 0 0 44 113 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 80 - u - - - ML 219 218 3 221 3 1 1 48 117 -5.910 -0.049 -5.910 0.276 -0.538 -0.987 0.675 D 220 218 3 221 3 0 0 32 101 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 81 - u - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 0.259 -0.914 -0.108 0.427 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 75 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Yar_1 ACC RF02085 DESC Yellow-achaete intergenic RNA conserved region 1 LENG 74 MAXL 164 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:48:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 3.813477 STATS LOCAL MSV -8.7706 0.71867 STATS LOCAL VITERBI -9.0584 0.71867 STATS LOCAL FORWARD -3.9797 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47619 1.51742 1.50548 1.10773 1.38629 1.38629 1.38629 1.38629 0.01960 5.24453 4.25935 0.39730 1.11515 0.00000 * 1 0.68478 1.76359 2.14602 1.57301 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 2 0.71047 2.11747 1.66066 1.61830 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 3 1.50749 0.95882 1.73127 1.52266 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 4 1.71857 1.10847 1.09215 1.86356 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 5 0.92533 1.52345 1.75562 1.54722 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 6 1.71251 1.68810 0.80271 1.67876 - g - - : 1.38629 1.38629 1.38629 1.38629 0.08587 4.09659 2.72338 1.46634 0.26236 1.09861 0.40547 7 1.97298 1.35350 1.71014 0.86326 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03560 4.04632 4.04632 1.46634 0.26236 1.78306 0.18407 8 1.75931 2.25096 2.40956 0.45779 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03560 4.04632 4.04632 1.46634 0.26236 0.40985 1.08991 9 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 10 1.87375 0.57799 2.41977 1.62718 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 11 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 12 0.10702 3.50778 3.30458 3.35776 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 13 0.10702 3.50778 3.30458 3.35776 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 14 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 15 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 16 2.60123 1.83960 2.74161 0.35315 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 17 1.34839 1.40905 2.06096 0.99795 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 18 0.54056 1.58126 2.39252 2.11641 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 19 2.45292 1.34835 2.58601 0.54651 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 20 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 21 2.42677 0.94054 2.55899 0.81221 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 22 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 23 0.30825 2.83305 2.01445 2.61672 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 24 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 25 0.10702 3.50778 3.30458 3.35776 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 26 1.79516 0.58320 2.40418 1.68498 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 27 2.39220 2.81187 0.31868 2.10893 - G - - : 1.38629 1.38629 1.38629 1.38629 0.16875 4.09659 1.97582 1.46634 0.26236 1.09861 0.40547 28 2.08277 1.17704 0.84850 1.97207 - g - - : 1.38629 1.38629 1.38629 1.38629 0.44089 1.08590 3.96646 0.01178 4.44759 0.21501 1.64263 29 3.19997 0.15402 3.36253 2.69814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 30 2.13408 2.27607 0.81062 1.09549 - g - - : 1.38629 1.38629 1.38629 1.38629 0.09780 4.09659 2.56992 1.46634 0.26236 1.09861 0.40547 31 2.49129 1.77345 2.62638 0.39288 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03602 4.03481 4.03481 1.46634 0.26236 0.36083 1.19435 32 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 33 0.10702 3.50778 3.30458 3.35776 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 34 0.10702 3.50778 3.30458 3.35776 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 35 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 36 1.02432 2.16289 2.20328 0.87821 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 37 1.58619 2.25316 2.37535 0.51543 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 38 2.82485 0.31774 2.98772 1.81716 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 39 0.10702 3.50778 3.30458 3.35776 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 40 1.05951 1.14157 2.10318 1.55122 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 41 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 42 3.19997 0.15402 3.36253 2.69814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 43 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 44 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 45 3.19997 0.15402 3.36253 2.69814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 46 3.19997 0.15402 3.36253 2.69814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 47 0.10702 3.50778 3.30458 3.35776 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 48 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.15757 2.04678 4.09659 1.78932 0.18281 1.09861 0.40547 49 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 50 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 51 0.88018 2.51922 0.91224 2.27160 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 52 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 53 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 54 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 55 3.19997 0.15402 3.36253 2.69814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 56 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 57 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 58 3.19997 0.15402 3.36253 2.69814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 59 3.19997 0.15402 3.36253 2.69814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 60 2.94700 3.61194 0.11897 3.42136 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 61 2.49631 1.52748 2.63161 0.46431 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 62 3.01724 2.70778 3.14542 0.17277 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 63 2.49631 1.52748 2.63161 0.46431 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 64 2.44385 0.83498 2.57731 0.90805 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 65 2.28572 2.59281 0.44041 1.71637 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 66 1.97573 1.09344 1.55835 1.15266 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 67 0.90253 2.05385 1.47464 1.43819 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 68 2.00957 1.76762 1.55140 0.72719 - u - - : 1.38629 1.38629 1.38629 1.38629 0.08950 4.09659 2.67395 1.46634 0.26236 1.09861 0.40547 69 1.54006 1.65892 0.79978 1.92509 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03573 4.04282 4.04282 1.46634 0.26236 1.81614 0.17752 70 0.42177 2.61071 1.72450 2.38193 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03573 4.04282 4.04282 1.46634 0.26236 0.39350 1.12299 71 1.68888 2.19553 0.79402 1.37853 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 72 2.11898 1.77794 1.85502 0.58985 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 73 1.19513 1.75909 2.07055 0.91875 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03382 4.09659 4.09659 1.46634 0.26236 1.09861 0.40547 74 1.20655 2.01971 1.46112 1.09034 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //