INFERNAL1/a [1.1.4 | Dec 2020] NAME STnc480 ACC RF02068 DESC Enterobacterial sRNA STnc480 STATES 220 NODES 66 CLEN 72 W 108 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:46:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.030273 CKSUM 2679394391 NULL 0.000 0.000 0.000 0.000 GA 72.00 TC 72.00 NC 70.40 EFP7GF -9.0060 0.71884 ECMLC 0.50445 -8.19776 3.41614 1600000 420316 0.002855 ECMGC 0.39231 -16.25676 -1.95675 1600000 109262 0.003661 ECMLI 0.49740 -5.19705 5.54997 1600000 251603 0.004769 ECMGI 0.43032 -10.52119 1.58377 1600000 73168 0.005467 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 108 157 -6.989 -7.196 -0.052 -5.610 IL 1 1 2 1 4 1 23 111 159 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 110 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 22 108 157 -8.002 -0.020 -6.656 -0.349 -0.620 0.724 -0.131 D 4 2 3 5 3 0 17 106 155 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 22 109 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 21 107 156 -8.002 -0.020 -6.656 0.247 0.095 -1.053 0.337 D 7 5 3 8 3 0 16 105 154 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 108 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 20 106 155 -8.002 -0.020 -6.656 1.345 -1.616 -0.584 -1.098 D 10 8 3 11 3 0 16 104 153 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 107 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 20 105 154 -8.002 -0.020 -6.656 -0.790 0.005 -1.548 1.054 D 13 11 3 14 3 0 15 103 152 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 19 106 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 19 104 153 -8.002 -0.020 -6.656 1.735 -2.448 -2.073 -1.998 D 16 14 3 17 3 0 14 102 151 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 105 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 18 103 152 -8.002 -0.020 -6.656 1.735 -2.448 -2.073 -1.998 D 19 17 3 20 3 0 13 101 150 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 104 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 17 102 151 -8.002 -0.020 -6.656 1.735 -2.448 -2.073 -1.998 D 22 20 3 23 3 0 12 100 149 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 17 103 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 16 101 150 -8.002 -0.020 -6.656 1.735 -2.448 -2.073 -1.998 D 25 23 3 26 3 0 12 99 148 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 16 102 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 15 100 149 -8.002 -0.020 -6.656 1.735 -2.448 -2.073 -1.998 D 28 26 3 29 3 0 11 98 147 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 15 101 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 14 99 148 -8.002 -0.020 -6.656 1.735 -2.448 -2.073 -1.998 D 31 29 3 32 3 0 10 97 146 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 14 100 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 33 32 3 35 3 1 13 98 147 -8.390 -0.142 -3.464 0.906 -0.978 -1.094 0.203 D 34 32 3 35 3 0 10 97 146 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 14 99 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 79 - G - - MR 36 35 3 38 3 1 15 98 146 -8.268 -0.020 -6.586 -1.382 -2.570 1.674 -1.956 D 37 35 3 38 3 0 8 94 143 -7.149 -2.327 -0.334 IR 38 38 3 38 3 1 13 98 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 78 - g - - MR 39 38 3 41 3 1 14 97 145 -8.268 -0.020 -6.586 -0.224 -0.294 0.349 0.077 D 40 38 3 41 3 0 7 93 142 -7.149 -2.327 -0.334 IR 41 41 3 41 3 1 13 97 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 77 - u - - MR 42 41 3 44 3 1 14 96 144 -8.268 -0.020 -6.586 -0.296 0.167 -0.536 0.457 D 43 41 3 44 3 0 7 91 140 -7.149 -2.327 -0.334 IR 44 44 3 44 3 1 12 96 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 76 - G - - MR 45 44 3 47 3 1 13 95 144 -3.085 -0.198 -6.586 -0.555 -1.347 1.091 -0.330 D 46 44 3 47 3 0 7 86 135 -7.149 -2.327 -0.334 IR 47 47 3 47 3 1 13 99 148 -0.544 -1.746 -5.958 0.000 0.000 0.000 0.000 [ MATR 16 ] - 68 - a - - MR 48 47 3 50 3 1 13 71 89 -8.268 -0.020 -6.586 0.800 -1.305 0.319 -0.720 D 49 47 3 50 3 0 6 69 87 -7.149 -2.327 -0.334 IR 50 50 3 50 3 1 11 72 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 67 - G - - MR 51 50 3 53 3 1 12 70 88 -8.268 -0.020 -6.586 -1.382 -2.570 1.674 -1.956 D 52 50 3 53 3 0 6 68 86 -7.149 -2.327 -0.334 IR 53 53 3 53 3 1 11 71 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 66 - a - - MR 54 53 3 56 3 1 11 69 87 -8.268 -0.020 -6.586 0.483 0.365 -1.078 -0.250 D 55 53 3 56 3 0 5 67 85 -7.149 -2.327 -0.334 IR 56 56 3 56 3 1 10 70 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 65 - G - - MR 57 56 3 59 3 1 11 68 86 -8.268 -0.020 -6.586 -1.382 -2.570 1.674 -1.956 D 58 56 3 59 3 0 5 66 84 -7.149 -2.327 -0.334 IR 59 59 3 59 3 1 10 69 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 64 - G - - MR 60 59 3 62 3 1 10 67 85 -8.268 -0.020 -6.586 -0.555 -1.347 1.091 -0.330 D 61 59 3 62 3 0 4 65 83 -7.149 -2.327 -0.334 IR 62 62 3 62 3 1 9 68 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 63 - A - - MR 63 62 3 65 3 1 9 66 84 -8.268 -0.020 -6.586 1.676 -2.185 -1.836 -1.710 D 64 62 3 65 3 0 4 64 83 -7.149 -2.327 -0.334 IR 65 65 3 65 3 1 9 67 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 62 - C - - MR 66 65 3 68 3 1 8 65 83 -8.268 -0.020 -6.586 -0.843 1.054 -1.645 0.066 D 67 65 3 68 3 0 3 63 82 -7.149 -0.717 -1.379 IR 68 68 3 68 3 1 7 66 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 61 - U - - MR 69 68 3 71 3 1 8 64 82 -8.390 -0.018 -6.708 -0.633 -0.950 -0.744 1.164 D 70 68 3 71 3 0 2 62 81 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 65 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 60 - a - - MR 72 71 3 74 3 1 7 63 81 -8.390 -0.018 -6.708 0.906 -0.978 -1.094 0.203 D 73 71 3 74 3 0 1 61 80 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 6 64 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 59 - A - - MR 75 74 3 77 3 1 6 62 80 -8.390 -0.018 -6.708 1.329 -1.601 -0.545 -1.080 D 76 74 3 77 3 0 1 60 79 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 5 63 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - u - - MR 78 77 3 80 3 1 5 61 79 -8.390 -0.018 -6.708 -0.065 -0.811 -0.563 0.846 D 79 77 3 80 3 0 0 59 78 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 4 62 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 57 - A - - MR 81 80 3 83 3 1 4 60 78 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 82 80 3 83 3 0 0 58 77 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 4 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 56 - A - - MR 84 83 3 86 3 1 3 59 77 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 85 83 3 86 3 0 0 57 76 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 55 - A - - MR 87 86 3 89 3 1 2 58 76 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 88 86 3 89 3 0 0 56 75 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 54 - A - - MR 90 89 3 92 3 1 1 57 75 -8.390 -0.385 -2.111 1.735 -2.448 -2.073 -1.998 D 91 89 3 92 3 0 0 55 74 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 2 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 53 - A - - MR 93 92 3 95 3 1 3 56 75 -8.028 -0.023 -6.346 1.515 -1.681 -1.381 -1.163 D 94 92 3 95 3 0 0 54 73 -7.924 -1.592 -0.590 IR 95 95 3 95 3 1 2 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 52 - a - - MR 96 95 3 98 3 1 3 55 74 -8.157 -0.021 -6.475 0.867 -0.875 -0.962 0.160 D 97 95 3 98 3 0 0 52 71 -7.574 -2.752 -0.241 IR 98 98 3 98 3 1 1 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 51 - u - - MR 99 98 3 101 3 1 3 54 73 -8.157 -0.021 -6.475 -0.541 0.329 -1.295 0.722 D 100 98 3 101 3 0 0 52 70 -7.574 -2.752 -0.241 IR 101 101 3 101 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 50 - A - - MR 102 101 3 104 3 1 2 53 71 -8.157 -0.021 -6.475 1.609 -1.949 -1.624 -1.453 D 103 101 3 104 3 0 0 51 70 -7.574 -2.752 -0.241 IR 104 104 3 104 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 49 - A - - MR 105 104 3 107 3 1 1 52 70 -8.157 -0.021 -6.475 1.609 -1.949 -1.624 -1.453 D 106 104 3 107 3 0 0 51 69 -7.574 -0.497 -1.804 IR 107 107 3 107 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 48 - A - - MR 108 107 3 110 3 1 1 51 69 -8.390 -0.018 -6.708 1.267 -1.284 -1.287 -0.372 D 109 107 3 110 3 0 0 49 68 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 47 - U - - MR 111 110 3 113 3 1 1 50 68 -8.390 -0.018 -6.708 -1.556 -1.540 -2.293 1.638 D 112 110 3 113 3 0 0 48 67 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 46 - C - - MR 114 113 3 116 3 1 1 49 67 -8.390 -0.018 -6.708 -1.834 1.648 -2.660 -1.229 D 115 113 3 116 3 0 0 47 66 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 45 - G - - MR 117 116 3 119 3 1 1 48 66 -8.390 -0.018 -6.708 -1.662 -2.894 1.741 -2.281 D 118 116 3 119 3 0 0 46 65 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 44 - A - - MR 120 119 3 122 3 1 1 47 65 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 121 119 3 122 3 0 0 45 64 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 43 - U - - MR 123 122 3 125 3 1 1 46 64 -8.390 -0.018 -6.708 -1.556 -1.540 -2.293 1.638 D 124 122 3 125 3 0 0 44 63 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 42 - A - - MR 126 125 3 128 3 1 1 45 63 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 127 125 3 128 3 0 0 43 62 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 41 - C - - MR 129 128 3 131 3 1 1 44 62 -8.390 -0.018 -6.708 -1.834 1.648 -2.660 -1.229 D 130 128 3 131 3 0 0 42 61 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 40 - A - - MR 132 131 3 134 3 1 1 43 61 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 133 131 3 134 3 0 0 41 60 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 39 - A - - MR 135 134 3 137 3 1 1 42 60 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 136 134 3 137 3 0 0 40 59 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 38 - C - - MR 138 137 3 140 3 1 1 41 59 -8.390 -0.018 -6.708 -1.834 1.648 -2.660 -1.229 D 139 137 3 140 3 0 0 39 58 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 37 - C - - MR 141 140 3 143 3 1 1 40 58 -8.390 -0.018 -6.708 -1.834 1.648 -2.660 -1.229 D 142 140 3 143 3 0 0 38 57 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 36 - U - - MR 144 143 3 146 3 1 1 39 57 -8.390 -0.018 -6.708 -1.556 -1.540 -2.293 1.638 D 145 143 3 146 3 0 0 37 56 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 35 - A - - MR 147 146 3 149 3 1 1 38 56 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 148 146 3 149 3 0 0 36 55 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 34 - A - - MR 150 149 3 152 3 1 1 37 55 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 151 149 3 152 3 0 0 35 54 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 33 - A - - MR 153 152 3 155 3 1 1 36 54 -8.390 -0.018 -6.708 1.735 -2.448 -2.073 -1.998 D 154 152 3 155 3 0 0 34 53 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 32 - A - - MR 156 155 3 158 5 1 1 35 53 -7.127 -0.038 -6.942 -7.154 -8.046 1.735 -2.448 -2.073 -1.998 D 157 155 3 158 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 12 31 G C - - MP 159 158 3 163 6 2 2 34 52 -9.123 -9.062 -0.021 -7.839 -8.119 -8.514 -3.602 -2.602 -3.619 0.815 -3.974 -4.076 0.317 -4.036 -3.674 3.256 -4.052 -0.404 0.019 -0.926 -1.585 -2.647 ML 160 158 3 163 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 13 30 C G - - MP 165 164 6 169 6 2 2 32 50 -9.123 -9.062 -0.021 -7.839 -8.119 -8.514 -4.636 -4.550 -4.312 -0.774 -3.011 -4.712 3.577 -3.829 -4.364 -0.546 -4.615 -2.498 0.495 -4.700 -0.719 -3.201 ML 166 164 6 169 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 14 29 C G - - MP 171 170 6 175 6 2 2 30 48 -9.123 -9.062 -0.021 -7.839 -8.119 -8.514 -4.636 -4.550 -4.312 -0.774 -3.011 -4.712 3.577 -3.829 -4.364 -0.546 -4.615 -2.498 0.495 -4.700 -0.719 -3.201 ML 172 170 6 175 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 15 28 A U - - MP 177 176 6 181 6 2 2 28 46 -9.123 -9.062 -0.021 -7.839 -8.119 -8.514 -3.862 -2.876 -3.876 3.376 -4.249 -5.318 0.055 -3.913 -3.764 1.002 -4.316 -0.340 -0.362 -4.494 -1.885 -2.705 ML 178 176 6 181 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 16 27 C G - - MP 183 182 6 187 6 2 2 26 44 -9.123 -9.062 -0.021 -7.839 -8.119 -8.514 -4.636 -4.550 -4.312 -0.774 -3.011 -4.712 3.577 -3.829 -4.364 -0.546 -4.615 -2.498 0.495 -4.700 -0.719 -3.201 ML 184 182 6 187 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 17 26 G C - - MP 189 188 6 193 6 2 2 24 42 -9.123 -9.062 -0.021 -7.839 -8.119 -8.514 -4.820 -3.131 -4.927 0.148 -5.343 -4.724 -0.688 -5.175 -4.379 3.656 -4.710 -0.833 -1.071 -4.519 -2.729 -3.802 ML 190 188 6 193 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 18 25 G C - - MP 195 194 6 199 6 2 2 22 40 -9.123 -9.062 -0.021 -7.839 -8.119 -8.514 -4.820 -3.131 -4.927 0.148 -5.343 -4.724 -0.688 -5.175 -4.379 3.656 -4.710 -0.833 -1.071 -4.519 -2.729 -3.802 ML 196 194 6 199 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 19 24 u a - - MP 201 200 6 205 4 2 2 20 38 -6.989 -7.196 -0.052 -5.610 -0.575 -2.622 -2.726 0.702 -2.363 -3.532 1.580 -2.832 -2.760 0.881 -3.287 -0.867 2.605 -2.891 -0.263 -1.810 ML 202 200 6 205 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 205 205 5 205 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 20 - u - - - ML 207 206 6 209 3 1 1 16 35 -8.002 -0.020 -6.656 0.120 -0.869 -1.199 0.949 D 208 206 6 209 3 0 0 16 34 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 21 - c - - - ML 210 209 3 212 3 1 1 15 33 -8.002 -0.020 -6.656 -0.836 0.895 -1.643 0.333 D 211 209 3 212 3 0 0 15 33 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 22 - u - - - ML 213 212 3 215 3 1 1 13 31 -8.002 -0.020 -6.656 0.120 -0.869 -1.199 0.949 D 214 212 3 215 3 0 0 13 32 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 23 - c - - - ML 216 215 3 218 2 1 1 1 1 * 0.000 0.173 0.740 -1.296 -0.331 D 217 215 3 218 2 0 0 0 0 * 0.000 IL 218 218 3 218 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 219 218 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME STnc480 ACC RF02068 DESC Enterobacterial sRNA STnc480 LENG 72 MAXL 173 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:46:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 6 EFFN 2.346680 CKSUM 2679394391 STATS LOCAL MSV -8.9028 0.71884 STATS LOCAL VITERBI -9.3273 0.71884 STATS LOCAL FORWARD -3.6679 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.95714 1.55768 1.56230 1.63102 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 0.00000 * 1 1.67347 1.83176 0.84273 1.50624 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 2 1.21370 1.30254 2.15157 1.15593 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 3 0.42441 2.59005 1.80589 2.23959 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 4 2.00392 1.37516 2.53447 0.62906 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 5 0.15448 3.24202 2.96583 2.94616 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 6 0.15448 3.24202 2.96583 2.94616 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 7 0.15449 3.24202 2.96583 2.94616 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 8 0.15448 3.24202 2.96583 2.94616 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 9 0.15448 3.24202 2.96583 2.94616 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 10 0.15448 3.24202 2.96583 2.94616 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 11 0.73584 2.10648 2.19065 1.24692 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 12 2.08646 2.52355 0.39333 2.11287 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 13 3.19786 0.23978 2.97335 2.11020 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 14 3.19872 0.23968 2.97376 2.11035 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 15 0.34089 2.77519 1.83402 2.70670 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 16 3.19764 0.23980 2.97324 2.11016 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 17 2.58607 3.24164 0.16957 3.18068 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 18 2.58567 3.24118 0.16966 3.18003 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 19 1.81238 1.57543 1.86395 0.74495 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 20 1.30949 2.03553 2.26871 0.70121 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 21 2.04174 0.72529 2.61128 1.16292 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 22 1.30949 2.03553 2.26871 0.70121 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 23 1.27379 0.83100 2.35224 1.66357 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 24 0.76090 2.03666 1.39825 1.86263 24 a - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 25 3.38158 0.20077 3.07599 2.28514 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 26 3.38316 0.20063 3.07668 2.28544 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 27 2.38785 3.14120 0.20703 2.95746 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 28 2.93521 2.12859 2.58761 0.28412 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 29 2.38955 3.14352 0.20654 2.96025 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 30 2.39082 3.14525 0.20617 2.96234 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 31 2.65351 0.39713 2.34338 1.82422 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 32 0.15448 3.24202 2.96583 2.94616 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 33 0.15448 3.24202 2.96583 2.94616 33 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 34 0.15448 3.24202 2.96583 2.94616 34 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 35 0.15448 3.24202 2.96583 2.94616 35 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 36 2.61250 2.57603 3.13001 0.21461 36 U - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 37 2.84965 0.20072 3.42570 2.39178 37 C - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 38 2.84965 0.20072 3.42570 2.39178 38 C - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 39 0.15448 3.24202 2.96583 2.94616 39 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 40 0.15448 3.24202 2.96583 2.94616 40 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 41 2.84965 0.20072 3.42570 2.39178 41 C - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 42 0.15448 3.24202 2.96583 2.94616 42 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 43 2.61250 2.57603 3.13001 0.21461 43 U - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 44 0.15448 3.24202 2.96583 2.94616 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 45 2.70313 3.58140 0.14779 3.15690 45 G - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 46 2.84965 0.20072 3.42570 2.39178 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 47 2.61250 2.57603 3.13001 0.21461 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 48 0.47783 2.33578 2.34474 1.67524 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.24048 3.94276 1.63807 1.46634 0.26236 1.09861 0.40547 49 0.23406 2.86553 2.62697 2.53280 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.04816 3.75043 3.75043 1.46634 0.26236 2.48666 0.08685 50 0.23406 2.86553 2.62697 2.53280 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.04816 3.75043 3.75043 1.46634 0.26236 2.48666 0.08685 51 1.81043 1.13413 2.33952 0.87146 51 u - - : 1.38629 1.38629 1.38629 1.38629 0.04816 3.75043 3.75043 1.46634 0.26236 2.48666 0.08685 52 0.76452 2.02427 2.09017 1.27767 52 a - - : 1.38629 1.38629 1.38629 1.38629 0.16347 3.75043 2.06121 1.46634 0.26236 2.48666 0.08685 53 0.29654 2.65856 2.44061 2.30803 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.05389 3.64085 3.64085 1.46634 0.26236 0.12975 2.10634 54 0.15448 3.24202 2.96583 2.94616 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 55 0.15448 3.24202 2.96583 2.94616 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 56 0.15448 3.24202 2.96583 2.94616 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 57 0.15448 3.24202 2.96583 2.94616 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 58 1.44522 1.98610 1.78433 0.77834 58 u - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 59 0.43564 2.57840 1.77644 2.22552 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 60 0.73584 2.10648 2.19065 1.24692 60 a - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94276 3.94276 1.46634 0.26236 1.09861 0.40547 61 1.89058 2.10489 1.92667 0.54210 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.14381 3.94276 2.16671 1.46634 0.26236 1.09861 0.40547 62 2.05234 0.61006 2.61791 1.36535 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 63 0.19163 3.04496 2.78835 2.72924 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 64 1.83657 2.39113 0.58476 1.65093 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 65 2.49759 3.34581 0.18802 2.92084 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 66 1.04149 1.10291 2.18201 1.59774 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 67 2.49759 3.34581 0.18802 2.92084 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 68 0.81284 2.35174 1.14363 1.94814 68 a - - : 1.38629 1.38629 1.38629 1.38629 0.19793 1.84429 3.84276 1.91260 0.15981 2.06768 0.13522 69 1.83657 2.39113 0.58476 1.65093 76 G - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 70 1.62113 1.25018 1.76107 1.06708 77 u - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 71 1.57328 1.58873 1.11226 1.34847 78 g - - : 1.38629 1.38629 1.38629 1.38629 0.04381 3.84276 3.84276 1.46634 0.26236 2.06768 0.13522 72 2.49759 3.34581 0.18802 2.92084 79 G - - : 1.38629 1.38629 1.38629 1.38629 0.02215 3.82109 * 1.46634 0.26236 0.00000 * //