INFERNAL1/a [1.1.4 | Dec 2020] NAME STnc310 ACC RF02067 DESC Salmonella enterica sRNA STnc310 STATES 192 NODES 55 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Tue Mar 4 08:51:51 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 2.160156 CKSUM 3121186323 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 45.70 NC 37.60 EFP7GF -9.4685 0.71930 ECMLC 0.61091 -8.52974 1.49976 1600000 549743 0.002183 ECMGC 0.40286 -17.32727 -3.45869 1600000 106785 0.003746 ECMLI 0.54501 -7.48839 2.87864 1600000 341199 0.003517 ECMGI 0.44302 -11.91590 -0.24102 1600000 70522 0.005672 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 77 97 -7.039 -7.247 -0.050 -5.661 IL 1 1 2 1 4 1 23 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 22 77 97 -8.435 -0.097 -4.005 1.455 -1.776 -0.847 -1.283 D 4 2 3 5 3 0 18 76 95 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 22 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - G - - MR 6 5 3 8 3 1 22 76 96 -8.356 -0.019 -6.674 -0.591 -0.952 1.180 -0.853 D 7 5 3 8 3 0 16 74 94 -6.943 -2.121 -0.392 IR 8 8 3 8 3 1 21 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 62 - G - - MR 9 8 3 11 3 1 21 75 95 -8.356 -0.019 -6.674 -0.158 -1.787 1.249 -1.194 D 10 8 3 11 3 0 16 73 93 -6.943 -2.121 -0.392 IR 11 11 3 11 3 1 20 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 61 - G - - MR 12 11 3 14 3 1 21 74 94 -8.356 -0.019 -6.674 -1.583 -2.804 1.724 -2.191 D 13 11 3 14 3 0 15 72 92 -6.943 -2.121 -0.392 IR 14 14 3 14 3 1 20 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 60 - G - - MR 15 14 3 17 3 1 20 73 93 -8.356 -0.019 -6.674 -0.158 -1.787 1.249 -1.194 D 16 14 3 17 3 0 15 71 91 -6.943 -2.121 -0.392 IR 17 17 3 17 3 1 19 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 59 - U - - MR 18 17 3 20 3 1 19 72 92 -8.356 -0.019 -6.674 -0.750 0.038 -1.506 1.019 D 19 17 3 20 3 0 14 70 90 -6.943 -2.121 -0.392 IR 20 20 3 20 3 1 18 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 58 - A - - MR 21 20 3 23 3 1 18 71 91 -8.356 -0.019 -6.674 1.720 -2.374 -2.006 -1.917 D 22 20 3 23 3 0 14 69 89 -6.943 -2.121 -0.392 IR 23 23 3 23 3 1 18 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 57 - G - - MR 24 23 3 26 3 1 17 70 90 -8.356 -0.104 -3.904 -0.740 -1.587 1.264 -0.586 D 25 23 3 26 3 0 13 68 88 -6.943 -2.121 -0.392 IR 26 26 3 26 3 1 17 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - U - - MR 27 26 3 29 3 1 17 69 89 -8.271 -0.020 -6.589 -0.519 -0.854 -0.665 1.083 D 28 26 3 29 3 0 13 67 87 -7.348 -1.257 -0.797 IR 29 29 3 29 3 1 17 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - U - - MR 30 29 3 32 3 1 16 68 88 -8.356 -0.019 -6.674 -0.211 -0.914 -1.336 1.143 D 31 29 3 32 3 0 12 66 86 -6.943 -2.121 -0.392 IR 32 32 3 32 3 1 16 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 54 - U - - MR 33 32 3 35 3 1 15 67 87 -8.356 -0.019 -6.674 -0.211 -0.914 -1.336 1.143 D 34 32 3 35 3 0 12 65 85 -6.943 -2.121 -0.392 IR 35 35 3 35 3 1 15 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - U - - MR 36 35 3 38 3 1 14 66 86 -8.356 -0.019 -6.674 -1.488 -1.484 -2.222 1.619 D 37 35 3 38 3 0 11 64 84 -6.943 -2.121 -0.392 IR 38 38 3 38 3 1 14 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - U - - MR 39 38 3 41 3 1 13 65 85 -8.356 -0.019 -6.674 -1.488 -1.484 -2.222 1.619 D 40 38 3 41 3 0 11 63 83 -6.943 -2.121 -0.392 IR 41 41 3 41 3 1 13 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - G - - MR 42 41 3 44 3 1 12 64 84 -8.356 -0.019 -6.674 -1.583 -2.804 1.724 -2.191 D 43 41 3 44 3 0 11 62 82 -6.943 -2.121 -0.392 IR 44 44 3 44 3 1 13 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 50 - C - - MR 45 44 3 47 2 1 11 63 83 -8.358 -0.004 -1.744 1.625 -2.568 -1.157 D 46 44 3 47 2 0 10 62 82 -5.005 -0.046 IR 47 47 3 47 2 1 12 64 84 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 16 ] - - - - - - B 48 47 3 49 105 0 10 62 82 [ BEGL 17 ] - - - - - - S 49 48 1 50 4 0 0 33 52 -0.043 -6.880 -6.288 -6.928 [ MATP 18 ] 2 20 U A - - MP 50 49 1 54 6 2 2 33 52 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -4.393 -4.223 -4.209 -0.504 -3.108 -4.754 1.224 -3.818 -4.212 -0.278 -4.575 -2.116 3.417 -4.537 -0.780 -3.015 ML 51 49 1 54 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 1 54 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 1 54 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 3 19 U A - - MP 56 55 6 60 6 2 2 31 50 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -4.393 -4.223 -4.209 -0.504 -3.108 -4.754 1.224 -3.818 -4.212 -0.278 -4.575 -2.116 3.417 -4.537 -0.780 -3.015 ML 57 55 6 60 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 4 18 G C - - MP 62 61 6 66 6 2 2 29 48 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -4.913 -3.176 -5.029 0.085 -5.473 -4.760 -0.795 -5.283 -4.438 3.677 -4.763 -0.882 -1.175 -4.579 -2.841 -3.903 ML 63 61 6 66 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 5 17 U A - - MP 68 67 6 72 4 2 2 27 46 -7.039 -7.247 -0.050 -5.661 -4.393 -4.223 -4.209 -0.504 -3.108 -4.754 1.224 -3.818 -4.212 -0.278 -4.575 -2.116 3.417 -4.537 -0.780 -3.015 ML 69 67 6 72 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 71 67 6 72 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 72 72 5 72 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 73 73 6 73 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 6 - G - - - ML 74 73 6 76 3 1 1 24 43 -8.050 -0.019 -6.704 -1.762 -3.010 1.762 -2.397 D 75 73 6 76 3 0 0 23 42 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 7 - A - - - ML 77 76 3 79 3 1 1 23 41 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 78 76 3 79 3 0 0 22 41 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 8 - C - - - ML 80 79 3 82 3 1 1 22 40 -8.050 -0.019 -6.704 -1.950 1.676 -2.779 -1.321 D 81 79 3 82 3 0 0 21 39 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 9 - A - - - ML 83 82 3 85 3 1 1 20 39 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 84 82 3 85 3 0 0 19 38 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 10 - U - - - ML 86 85 3 88 3 1 1 19 38 -3.805 -0.122 -6.704 -1.645 -1.614 -2.386 1.661 D 87 85 3 88 3 0 0 17 36 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 20 39 -1.665 -0.653 -4.365 0.000 0.000 0.000 0.000 [ MATL 27 ] 12 - G - - - ML 89 88 3 91 3 1 1 17 36 -8.050 -0.019 -6.704 -1.762 -3.010 1.762 -2.397 D 90 88 3 91 3 0 0 17 36 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 13 - U - - - ML 92 91 3 94 3 1 1 16 35 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 93 91 3 94 3 0 0 16 34 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 14 - U - - - ML 95 94 3 97 3 1 1 15 33 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 96 94 3 97 3 0 0 15 33 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 15 - A - - - ML 98 97 3 100 3 1 1 13 31 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 99 97 3 100 3 0 0 13 32 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 16 - A - - - ML 101 100 3 103 2 1 1 1 1 * 0.000 1.754 -2.544 -2.159 -2.104 D 102 100 3 103 2 0 0 0 0 * 0.000 IL 103 103 3 103 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 104 103 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 105 48 1 106 3 0 1 43 62 -8.050 -0.019 -6.704 IL 106 106 2 106 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 21 - A - - - ML 107 106 2 109 3 1 1 43 62 -8.050 -0.019 -6.704 1.754 -2.544 -2.159 -2.104 D 108 106 2 109 3 0 0 41 61 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 22 - A - - - ML 110 109 3 112 3 1 1 42 61 -8.050 -0.120 -3.714 1.754 -2.544 -2.159 -2.104 D 111 109 3 112 3 0 0 40 60 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 23 - A - - - ML 113 112 3 115 3 1 1 41 60 -7.950 -0.131 -3.593 1.288 -0.841 -1.259 -0.779 D 114 112 3 115 3 0 0 39 58 -6.900 -2.413 -0.315 IL 115 115 3 115 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 24 - c - - - ML 116 115 3 118 3 1 1 40 59 -7.841 -0.022 -6.495 -0.037 0.839 -1.278 -0.278 D 117 115 3 118 3 0 0 38 57 -7.387 -0.509 -1.779 IL 118 118 3 118 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 25 - G - - - ML 119 118 3 121 5 1 1 38 57 -3.794 -0.218 -4.118 -7.196 -8.087 -0.524 -2.110 1.446 -1.524 D 120 118 3 121 5 0 0 37 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 121 121 3 121 5 1 1 39 58 -2.662 -0.404 -4.341 -6.173 -5.447 0.000 0.000 0.000 0.000 [ MATP 39 ] 27 49 C G - - MP 122 121 3 126 6 2 2 37 56 -9.108 -9.047 -0.064 -4.902 -8.104 -8.499 -4.559 -4.466 -4.247 -0.697 -2.963 -4.658 3.554 -3.774 -4.297 -0.458 -4.557 -2.413 0.551 -4.627 -0.669 -3.136 ML 123 121 3 126 6 1 1 36 55 -6.659 -7.005 -1.719 -0.685 -6.855 -4.384 -0.032 0.424 -0.730 0.108 MR 124 121 3 126 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 28 48 C G - - MP 128 127 6 132 6 2 2 35 54 -9.065 -9.005 -0.060 -7.781 -5.080 -8.456 -4.341 -4.228 -4.065 -0.480 -2.831 -4.504 3.481 -3.620 -4.109 -0.208 -4.391 -2.173 0.703 -4.424 -0.533 -2.956 ML 129 127 6 132 6 1 1 35 54 -7.027 -7.373 -0.618 -1.782 -7.223 -4.753 0.028 -0.106 0.064 0.008 MR 130 127 6 132 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 29 47 C G - - MP 134 133 6 138 4 2 2 33 52 -6.948 -7.155 -0.053 -5.569 -4.555 -4.462 -4.244 -0.693 -2.961 -4.655 3.553 -3.771 -4.294 -0.454 -4.554 -2.409 0.553 -4.624 -0.667 -3.133 ML 135 133 6 138 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 4 1 1 33 52 -5.225 -4.254 -2.121 -0.533 0.072 -0.809 0.630 -0.268 D 137 133 6 138 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 138 138 5 138 4 1 1 35 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 139 139 6 139 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - g - - - ML 140 139 6 142 3 1 1 31 49 -8.354 -0.019 -6.672 0.071 -0.776 0.738 -0.519 D 141 139 6 142 3 0 0 29 48 -6.046 -0.508 -1.829 IL 142 142 3 142 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 46 - C - - MR 143 142 3 145 5 1 1 30 48 -7.168 -0.037 -6.984 -7.196 -8.087 -1.950 1.676 -2.779 -1.321 D 144 142 3 145 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 145 145 3 145 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 31 45 G C - - MP 146 145 3 150 6 2 2 29 47 -9.143 -9.082 -0.021 -7.859 -8.139 -8.534 -3.605 -0.376 -3.613 1.240 -4.174 -4.208 0.200 -4.043 -3.681 3.152 -4.073 -0.240 -0.065 -3.567 -1.711 -2.593 ML 147 145 3 150 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 3 150 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 32 44 C G - - MP 152 151 6 156 6 2 2 27 45 -9.143 -9.082 -0.057 -7.859 -5.157 -8.534 -4.738 -4.661 -4.396 -0.876 -3.074 -4.783 3.605 -3.903 -4.452 -0.662 -4.692 -2.611 0.421 -4.795 -0.785 -3.286 ML 153 151 6 156 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 33 43 a u - - MP 158 157 6 162 6 2 2 25 43 -9.107 -9.047 -0.021 -7.823 -8.103 -8.498 -3.424 -2.487 -3.491 2.759 -3.876 -4.612 0.442 -3.673 -3.421 2.166 -3.941 -0.048 0.125 -3.809 -1.495 -2.356 ML 159 157 6 162 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 23 42 -7.355 -6.084 -1.071 -6.062 -1.196 -4.276 -0.061 -0.433 -0.668 0.741 D 161 157 6 162 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 34 42 G C - - MP 164 163 6 168 4 2 2 23 41 -6.949 -8.194 -0.076 -4.648 -4.913 -3.176 -5.029 0.085 -5.473 -4.760 -0.795 -5.283 -4.438 3.677 -4.763 -0.882 -1.175 -4.579 -2.841 -3.903 ML 165 163 6 168 4 1 1 22 41 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 22 40 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 20 39 -12.737 -14.007 -2.036 -0.404 IL 168 168 5 168 4 1 1 22 41 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 22 41 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 41 - G - - MR 170 169 6 172 5 1 1 21 39 -7.168 -0.037 -6.984 -7.196 -8.087 -1.762 -3.010 1.762 -2.397 D 171 169 6 172 5 0 0 20 39 -5.352 -0.707 -2.978 -4.409 -2.404 IR 172 172 3 172 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 35 40 G C - - MP 173 172 3 177 4 2 2 20 38 -7.039 -7.247 -0.050 -5.661 -4.913 -3.176 -5.029 0.085 -5.473 -4.760 -0.795 -5.283 -4.438 3.677 -4.763 -0.882 -1.175 -4.579 -2.841 -3.903 ML 174 172 3 177 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 3 177 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 3 177 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 36 - U - - - ML 179 178 6 181 3 1 1 16 35 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 180 178 6 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 37 - G - - - ML 182 181 3 184 3 1 1 15 33 -8.050 -0.019 -6.704 -0.287 -1.950 1.341 -1.364 D 183 181 3 184 3 0 0 15 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 38 - U - - - ML 185 184 3 187 3 1 1 13 31 -8.050 -0.019 -6.704 -1.645 -1.614 -2.386 1.661 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 39 - a - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 0.919 -1.460 0.268 -0.885 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME STnc310 ACC RF02067 DESC Salmonella enterica sRNA STnc310 LENG 61 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Mar 4 08:51:51 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 8 EFFN 2.722656 CKSUM 3121186323 STATS LOCAL MSV -8.4044 0.71930 STATS LOCAL VITERBI -8.7023 0.71930 STATS LOCAL FORWARD -3.6334 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38466 1.54556 1.21583 1.42739 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 0.00000 * 1 0.33089 2.77217 2.01866 2.44932 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 2 3.18691 2.05833 2.95215 0.24999 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 3 3.18134 2.05792 2.94953 0.25053 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 4 2.70109 3.41969 0.14461 3.35855 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 5 3.17549 2.05749 2.94678 0.25110 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 6 2.87913 3.78026 0.12095 3.35463 6 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 7 0.12818 3.41536 3.12249 3.13755 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 8 3.05962 0.16309 3.63486 2.56149 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 9 0.12818 3.41536 3.12249 3.13755 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 10 2.77638 2.71233 3.29996 0.18096 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.11909 2.36134 4.01877 0.34552 1.23049 1.09861 0.40547 11 2.87913 3.78026 0.12095 3.35463 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 12 2.77638 2.71233 3.29996 0.18096 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 13 2.77638 2.71233 3.29996 0.18096 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 14 0.12818 3.41536 3.12249 3.13755 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 15 0.12818 3.41536 3.12249 3.13755 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 16 0.28518 3.13201 1.89389 2.91865 17 A - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 17 3.54210 0.17310 3.25231 2.39353 18 C - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 18 0.28561 3.12950 1.89355 2.91572 19 A - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 19 0.28630 3.12543 1.89300 2.91099 20 A - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 20 0.12818 3.41536 3.12249 3.13755 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 21 0.12818 3.41536 3.12249 3.13755 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.11760 4.01877 2.37544 1.46634 0.26236 1.09861 0.40547 22 0.44103 2.00679 2.37438 2.04690 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.12939 3.94081 2.28338 1.46634 0.26236 1.97024 0.15015 23 1.44972 0.72889 2.38469 1.65653 24 c - - - 1.38629 1.38629 1.38629 1.38629 0.04328 3.85470 3.85470 1.46634 0.26236 0.19256 1.74206 24 1.83663 3.03424 0.32692 2.63960 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.12711 2.28884 4.01877 0.32328 1.28651 1.09861 0.40547 25 3.00237 0.26006 2.92784 2.07298 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 26 2.81359 0.32230 2.59734 1.95858 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.10619 4.01877 2.49170 1.46634 0.26236 1.09861 0.40547 27 3.11943 0.24344 2.95998 2.11968 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03920 3.95178 3.95178 1.46634 0.26236 1.88778 0.16418 28 1.37101 1.95537 0.81043 1.83276 30 g - - - 1.38629 1.38629 1.38629 1.38629 0.03920 3.95178 3.95178 1.46634 0.26236 0.36071 1.19463 29 1.56166 2.62214 0.45656 2.47568 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 30 3.37684 0.20027 3.17333 2.24935 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.10619 4.01877 2.49170 1.46634 0.26236 1.09861 0.40547 31 0.71518 2.51083 1.08516 2.38760 33 a - - < 1.38629 1.38629 1.38629 1.38629 0.03920 3.95178 3.95178 1.46634 0.26236 0.36071 1.19463 32 2.69684 3.41428 0.14545 3.35111 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 33 2.68358 3.39744 0.14808 3.32808 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 34 2.77638 2.71233 3.29996 0.18096 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 35 1.64614 2.90608 0.39847 2.51119 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 36 2.77638 2.71233 3.29996 0.18096 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 37 0.71222 2.52504 1.16804 2.13357 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 38 3.55529 0.17210 3.25835 2.39602 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 39 2.87913 3.78026 0.12095 3.35463 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 40 3.44700 0.18072 3.20747 2.37481 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 41 2.56782 1.25500 2.31259 0.61764 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 42 2.53218 3.34613 0.17172 3.14466 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 43 2.72629 0.44770 2.43695 1.57014 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 44 3.05962 0.16309 3.63486 2.56149 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 45 2.37062 3.12942 0.21209 2.91977 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.19187 4.01877 1.85398 1.46634 0.26236 1.09861 0.40547 46 2.28344 2.98927 0.23827 2.81759 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04263 3.86953 3.86953 1.46634 0.26236 0.72811 0.65937 47 2.40504 3.16694 0.20272 2.97392 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 48 2.90142 0.19063 3.47772 2.43343 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 49 2.74690 3.63109 0.14054 3.20648 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 50 2.65259 2.60932 3.17169 0.20578 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 51 2.65259 2.60932 3.17169 0.20578 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 52 1.57775 2.11219 2.42035 0.53837 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 53 1.57775 2.11219 2.42035 0.53837 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.11383 3.95302 2.42595 1.46634 0.26236 1.87800 0.16593 54 1.83760 2.06232 1.88314 0.57709 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04212 3.88131 3.88131 1.46634 0.26236 0.78992 0.60492 55 2.03446 2.63355 0.43985 1.87542 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 56 0.14751 3.28469 3.00433 2.99325 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 57 2.01615 1.34417 2.54945 0.63875 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 58 1.54668 2.77795 0.45882 2.37678 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 59 2.74690 3.63109 0.14054 3.20648 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 60 1.54668 2.77795 0.45882 2.37678 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03915 3.95302 3.95302 1.46634 0.26236 1.87800 0.16593 61 1.92414 2.10078 0.49022 2.12739 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.01977 3.93364 * 1.46634 0.26236 0.00000 * //