INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc320 ACC RF02066 DESC Salmonella enterica sRNA STnc320 STATES 169 NODES 45 CLEN 55 W 70 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 04:28:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02066/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.047852 CKSUM 1531095028 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 59.50 NC 48.80 EFP7GF -10.7693 0.71978 ECMLC 0.55838 -10.04867 1.56313 1600000 785368 0.001528 ECMGC 0.48753 -14.44526 -1.56335 1600000 213572 0.001873 ECMLI 0.54900 -7.58833 2.99696 1600000 400879 0.002993 ECMGI 0.46929 -11.46717 0.99096 1600000 138399 0.002890 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 70 90 -6.996 -7.203 -0.051 -5.617 IL 1 1 2 1 4 1 7 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 8 70 90 -8.009 -0.020 -6.663 -1.568 -1.550 -2.306 1.641 D 4 2 3 5 3 0 1 69 88 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 6 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 7 69 89 -8.009 -0.020 -6.663 -1.568 -1.550 -2.306 1.641 D 7 5 3 8 3 0 1 68 87 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 5 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 6 68 87 -8.009 -0.020 -6.663 -1.675 -2.910 1.744 -2.297 D 10 8 3 11 3 0 0 67 86 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 5 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 6 67 86 -8.009 -0.020 -6.663 1.738 -2.461 -2.084 -2.013 D 13 11 3 14 3 0 0 66 85 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 4 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 5 66 85 -8.009 -0.020 -6.663 -1.850 1.652 -2.677 -1.241 D 16 14 3 17 3 0 0 65 84 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 3 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 4 65 84 -8.009 -0.020 -6.663 -1.675 -2.910 1.744 -2.297 D 19 17 3 20 3 0 0 64 83 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 3 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 4 64 83 -8.009 -0.020 -6.663 -1.850 1.652 -2.677 -1.241 D 22 20 3 23 3 0 0 62 82 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 2 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 3 63 82 -8.009 -0.020 -6.663 1.020 -1.438 0.080 -0.872 D 25 23 3 26 3 0 0 61 81 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 2 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 3 62 81 -8.009 -0.020 -6.663 -0.777 0.089 -1.539 1.006 D 28 26 3 29 3 0 0 60 80 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 1 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 3 61 80 -8.009 -0.020 -6.663 1.738 -2.461 -2.084 -2.013 D 31 29 3 32 3 0 0 59 79 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 2 59 79 -8.009 -0.020 -6.663 -1.568 -1.550 -2.306 1.641 D 34 32 3 35 3 0 0 58 78 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 2 58 77 -8.009 -0.020 -6.663 -1.850 1.652 -2.677 -1.241 D 37 35 3 38 3 0 0 57 76 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 1 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 2 57 76 -8.009 -0.020 -6.663 1.738 -2.461 -2.084 -2.013 D 40 38 3 41 3 0 0 56 75 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 1 56 75 -8.009 -0.020 -6.663 -1.850 1.652 -2.677 -1.241 D 43 41 3 44 3 0 0 55 74 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 1 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 1 55 74 -8.009 -0.020 -6.663 1.738 -2.461 -2.084 -2.013 D 46 44 3 47 3 0 0 54 73 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 1 54 73 -8.009 -0.020 -6.663 1.738 -2.461 -2.084 -2.013 D 49 47 3 50 3 0 0 53 72 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 1 53 72 -8.009 -0.020 -6.663 -1.850 1.652 -2.677 -1.241 D 52 50 3 53 3 0 0 52 71 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 1 52 71 -8.009 -0.020 -6.663 1.738 -2.461 -2.084 -2.013 D 55 53 3 56 3 0 0 51 70 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 1 51 69 -8.396 -0.018 -6.714 1.738 -2.461 -2.084 -2.013 D 58 56 3 59 3 0 0 49 68 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 55 - U - - MR 60 59 3 62 3 1 1 50 68 -8.396 -0.018 -6.714 -1.568 -1.550 -2.306 1.641 D 61 59 3 62 3 0 0 48 67 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 54 - U - - MR 63 62 3 65 3 1 1 49 67 -8.396 -0.018 -6.714 -1.568 -1.550 -2.306 1.641 D 64 62 3 65 3 0 0 47 66 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 53 - C - - MR 66 65 3 68 3 1 1 48 66 -8.396 -0.018 -6.714 -1.850 1.652 -2.677 -1.241 D 67 65 3 68 3 0 0 46 65 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 52 - g - - MR 69 68 3 71 3 1 1 47 65 -8.396 -0.018 -6.714 0.339 -1.556 0.913 -0.964 D 70 68 3 71 3 0 0 45 64 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 51 - A - - MR 72 71 3 74 3 1 1 46 64 -8.396 -0.018 -6.714 1.738 -2.461 -2.084 -2.013 D 73 71 3 74 3 0 0 44 63 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 50 - C - - MR 75 74 3 77 3 1 1 45 63 -8.396 -0.018 -6.714 -1.850 1.652 -2.677 -1.241 D 76 74 3 77 3 0 0 43 62 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 49 - U - - MR 78 77 3 80 3 1 1 44 62 -8.396 -0.018 -6.714 -1.568 -1.550 -2.306 1.641 D 79 77 3 80 3 0 0 42 61 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 48 - C - - MR 81 80 3 83 5 1 1 43 61 -7.132 -0.038 -6.948 -7.160 -8.051 -1.850 1.652 -2.677 -1.241 D 82 80 3 83 5 0 0 41 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 20 47 A U - - MP 84 83 3 88 6 2 2 42 60 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -3.874 -2.884 -3.887 3.383 -4.266 -5.336 0.039 -3.923 -3.775 0.989 -4.327 -0.347 -0.378 -4.510 -1.901 -2.715 ML 85 83 3 88 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 38 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 46 A U - - MP 90 89 6 94 6 2 2 40 58 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -3.874 -2.884 -3.887 3.383 -4.266 -5.336 0.039 -3.923 -3.775 0.989 -4.327 -0.347 -0.378 -4.510 -1.901 -2.715 ML 91 89 6 94 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 36 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 45 A U - - MP 96 95 6 100 6 2 2 38 56 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -3.874 -2.884 -3.887 3.383 -4.266 -5.336 0.039 -3.923 -3.775 0.989 -4.327 -0.347 -0.378 -4.510 -1.901 -2.715 ML 97 95 6 100 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 34 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 44 A U - - MP 102 101 6 106 6 2 2 36 54 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -3.874 -2.884 -3.887 3.383 -4.266 -5.336 0.039 -3.923 -3.775 0.989 -4.327 -0.347 -0.378 -4.510 -1.901 -2.715 ML 103 101 6 106 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 32 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 43 G C - - MP 108 107 6 112 6 2 2 34 52 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -4.833 -3.137 -4.941 0.139 -5.360 -4.729 -0.703 -5.189 -4.387 3.659 -4.717 -0.840 -1.085 -4.527 -2.745 -3.816 ML 109 107 6 112 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 42 G C - - MP 114 113 6 118 6 2 2 32 50 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -4.833 -3.137 -4.941 0.139 -5.360 -4.729 -0.703 -5.189 -4.387 3.659 -4.717 -0.840 -1.085 -4.527 -2.745 -3.816 ML 115 113 6 118 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 41 G C - - MP 120 119 6 124 6 2 2 30 48 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -4.833 -3.137 -4.941 0.139 -5.360 -4.729 -0.703 -5.189 -4.387 3.659 -4.717 -0.840 -1.085 -4.527 -2.745 -3.816 ML 121 119 6 124 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 40 C G - - MP 126 125 6 130 6 2 2 28 46 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -4.650 -4.565 -4.323 -0.788 -3.019 -4.722 3.581 -3.839 -4.376 -0.562 -4.626 -2.514 0.485 -4.713 -0.728 -3.212 ML 127 125 6 130 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 39 G C - - MP 132 131 6 136 6 2 2 26 44 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -4.833 -3.137 -4.941 0.139 -5.360 -4.729 -0.703 -5.189 -4.387 3.659 -4.717 -0.840 -1.085 -4.527 -2.745 -3.816 ML 133 131 6 136 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 29 38 C G - - MP 138 137 6 142 6 2 2 24 42 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -4.650 -4.565 -4.323 -0.788 -3.019 -4.722 3.581 -3.839 -4.376 -0.562 -4.626 -2.514 0.485 -4.713 -0.728 -3.212 ML 139 137 6 142 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 30 37 A U - - MP 144 143 6 148 6 2 2 22 40 -9.126 -9.065 -0.021 -7.842 -8.121 -8.516 -3.874 -2.884 -3.887 3.383 -4.266 -5.336 0.039 -3.923 -3.775 0.989 -4.327 -0.347 -0.378 -4.510 -1.901 -2.715 ML 145 143 6 148 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 31 36 C G - - MP 150 149 6 154 4 2 2 20 38 -6.996 -7.203 -0.051 -5.617 -4.650 -4.565 -4.323 -0.788 -3.019 -4.722 3.581 -3.839 -4.376 -0.562 -4.626 -2.514 0.485 -4.713 -0.728 -3.212 ML 151 149 6 154 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - a - - - ML 156 155 6 158 3 1 1 16 35 -8.009 -0.020 -6.663 0.334 -0.854 -0.032 0.273 D 157 155 6 158 3 0 0 16 34 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - U - - - ML 159 158 3 161 3 1 1 15 33 -8.009 -0.020 -6.663 -0.777 0.089 -1.539 1.006 D 160 158 3 161 3 0 0 15 33 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - U - - - ML 162 161 3 164 3 1 1 13 31 -8.009 -0.020 -6.663 -1.568 -1.550 -2.306 1.641 D 163 161 3 164 3 0 0 13 32 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - G - - - ML 165 164 3 167 2 1 1 1 1 * 0.000 -1.675 -2.910 1.744 -2.297 D 166 164 3 167 2 0 0 0 0 * 0.000 IL 167 167 3 167 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 168 167 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc320 ACC RF02066 DESC Salmonella enterica sRNA STnc320 LENG 55 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 04:28:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02066/CM NSEQ 3 EFFN 2.463867 CKSUM 1531095028 STATS LOCAL MSV -8.2778 0.71978 STATS LOCAL VITERBI -8.2976 0.71978 STATS LOCAL FORWARD -3.8862 0.71978 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36164 1.29641 1.51096 1.38810 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.66492 2.61956 3.18450 0.20314 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.66492 2.61956 3.18450 0.20314 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.76027 3.64623 0.13841 3.22157 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.14544 3.29779 3.01616 3.00770 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.91730 0.18764 3.49361 2.44623 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.76027 3.64623 0.13841 3.22157 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.91730 0.18764 3.49361 2.44623 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.64717 2.47884 1.31240 2.09182 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.01412 1.30868 2.54957 0.65726 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.14544 3.29779 3.01616 3.00770 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.66492 2.61956 3.18450 0.20314 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.91730 0.18764 3.49361 2.44623 12 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.14544 3.29779 3.01616 3.00770 13 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.91730 0.18764 3.49361 2.44623 14 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.14544 3.29779 3.01616 3.00770 15 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.14544 3.29779 3.01616 3.00770 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.91730 0.18764 3.49361 2.44623 17 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.14544 3.29779 3.01616 3.00770 18 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.14544 3.29779 3.01616 3.00770 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.31888 2.84263 1.88285 2.77089 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.31863 2.84364 1.88304 2.77233 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.31858 2.84383 1.88308 2.77260 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.31862 2.84368 1.88305 2.77238 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.62233 3.29872 0.16115 3.23727 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.62188 3.29817 0.16125 3.23651 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.62146 3.29765 0.16134 3.23579 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.25196 0.22666 3.03582 2.15356 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.62076 3.29681 0.16149 3.23462 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.25070 0.22679 3.03520 2.15333 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 0.31902 2.84203 1.88273 2.77003 30 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.24982 0.22688 3.03478 2.15318 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 1.15218 2.01672 1.39412 1.19432 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.01412 1.30868 2.54957 0.65726 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.66492 2.61956 3.18450 0.20314 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.76027 3.64623 0.13841 3.22157 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.42975 3.20157 0.19602 3.01089 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.99371 2.18333 2.65304 0.26553 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.43014 3.20211 0.19591 3.01154 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 3.43207 0.19147 3.13241 2.31949 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.43074 3.20294 0.19575 3.01253 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.43453 0.19126 3.13351 2.31996 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.43622 0.19112 3.13427 2.32028 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.43835 0.19094 3.13522 2.32068 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.00015 2.18415 2.65553 0.26477 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.00229 2.18443 2.65635 0.26451 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 3.00515 2.18479 2.65746 0.26417 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 3.00909 2.18529 2.65897 0.26371 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 2.91730 0.18764 3.49361 2.44623 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.66492 2.61956 3.18450 0.20314 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.91730 0.18764 3.49361 2.44623 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 0.14544 3.29779 3.01616 3.00770 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 1.15231 2.56677 0.70879 2.16222 52 g - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.91730 0.18764 3.49361 2.44623 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 2.66492 2.61956 3.18450 0.20314 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.66492 2.61956 3.18450 0.20314 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //