INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc390 ACC RF02056 DESC Salmonella sRNA STnc390 STATES 189 NODES 51 CLEN 60 W 75 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 22:53:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02056/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.691406 CKSUM 3186765806 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 88.70 NC 40.20 EFP7GF -6.5233 0.72733 ECMLC 0.67227 -6.73308 2.42288 1600000 565431 0.002122 ECMGC 0.47289 -13.57590 -1.60445 1600000 115001 0.003478 ECMLI 0.65290 -4.83193 3.92483 1600000 364902 0.003289 ECMGI 0.47848 -9.93925 1.22328 1600000 83489 0.004791 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 75 95 -6.847 -7.054 -0.057 -5.468 IL 1 1 2 1 4 1 18 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 18 75 95 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 4 2 3 5 3 0 13 74 94 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 17 74 94 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 7 5 3 8 3 0 13 73 93 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 16 73 93 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 10 8 3 11 3 0 12 72 92 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 15 72 92 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 13 11 3 14 3 0 12 71 91 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 14 71 91 -7.871 -0.022 -6.525 -1.517 1.558 -2.332 -0.976 D 16 14 3 17 3 0 11 70 89 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 13 70 90 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 19 17 3 20 3 0 11 69 88 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 21 20 3 23 3 1 12 69 89 -7.871 -0.421 -2.007 -0.285 0.173 0.291 -0.271 D 22 20 3 23 3 0 10 68 87 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 12 68 88 -7.479 -0.029 -6.133 1.404 -1.436 -1.158 -0.902 D 25 23 3 26 3 0 10 67 86 -7.789 -0.368 -2.180 IL 26 26 3 26 3 1 12 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 12 67 86 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 28 26 3 29 3 0 7 66 85 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 11 66 85 -8.268 -0.020 -6.585 1.675 -2.184 -1.835 -1.708 D 31 29 3 32 3 0 7 65 84 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 10 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 60 - G - - MR 33 32 3 35 3 1 10 65 84 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 34 32 3 35 3 0 5 63 83 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 59 - G - - MR 36 35 3 38 3 1 9 64 83 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 37 35 3 38 3 0 5 62 82 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 9 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 58 - A - - MR 39 38 3 41 3 1 8 63 82 -8.268 -0.020 -6.585 1.675 -2.184 -1.835 -1.708 D 40 38 3 41 3 0 4 61 81 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 57 - U - - MR 42 41 3 44 3 1 7 62 81 -8.268 -0.020 -6.585 -1.315 -1.342 -2.039 1.566 D 43 41 3 44 3 0 4 60 80 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 7 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 56 - U - - MR 45 44 3 47 3 1 7 61 80 -8.268 -0.020 -6.585 -1.315 -1.342 -2.039 1.566 D 46 44 3 47 3 0 3 59 79 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 6 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 55 - G - - MR 48 47 3 50 3 1 6 60 79 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 49 47 3 50 3 0 3 58 78 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 6 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 54 - U - - MR 51 50 3 53 3 1 5 59 78 -8.268 -0.020 -6.585 -1.315 -1.342 -2.039 1.566 D 52 50 3 53 3 0 2 57 77 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 53 - U - - MR 54 53 3 56 3 1 4 58 77 -8.268 -0.020 -6.585 -1.315 -1.342 -2.039 1.566 D 55 53 3 56 3 0 2 57 76 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 4 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 52 - U - - MR 57 56 3 59 2 1 3 57 76 -8.244 -0.005 -1.315 -1.342 -2.039 1.566 D 58 56 3 59 2 0 2 56 75 -4.432 -0.068 IR 59 59 3 59 2 1 3 58 77 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 60 59 3 61 105 0 2 56 75 [ BEGL 21 ] - - - - - - S 61 60 1 62 4 0 0 28 47 -0.046 -6.783 -6.191 -6.831 [ MATP 22 ] 11 24 U A - - MP 62 61 1 66 6 2 2 28 47 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 63 61 1 66 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 1 66 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 1 66 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 12 23 A U - - MP 68 67 6 72 6 2 2 26 45 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 69 67 6 72 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 13 22 C G - - MP 74 73 6 78 6 2 2 24 43 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 75 73 6 78 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 14 21 G C - - MP 80 79 6 84 4 2 2 22 41 -6.847 -7.054 -0.057 -5.468 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 81 79 6 84 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 83 79 6 84 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 84 84 5 84 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 85 85 6 85 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 15 - U - - - ML 86 85 6 88 3 1 1 19 38 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 87 85 6 88 3 0 0 18 37 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 16 - U - - - ML 89 88 3 91 3 1 1 18 36 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 90 88 3 91 3 0 0 17 36 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 17 - U - - - ML 92 91 3 94 3 1 1 16 35 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 93 91 3 94 3 0 0 16 34 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 18 - C - - - ML 95 94 3 97 3 1 1 15 33 -7.871 -0.022 -6.525 -1.517 1.558 -2.332 -0.976 D 96 94 3 97 3 0 0 15 33 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 19 - A - - - ML 98 97 3 100 3 1 1 13 32 -7.871 -0.022 -6.525 1.675 -2.184 -1.835 -1.708 D 99 97 3 100 3 0 0 13 32 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 20 - U - - - ML 101 100 3 103 2 1 1 1 1 * 0.000 -1.315 -1.342 -2.039 1.566 D 102 100 3 103 2 0 0 0 0 * 0.000 IL 103 103 3 103 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 104 103 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 105 60 1 106 5 0 0 41 60 -7.012 -0.041 -6.828 -7.040 -7.931 IL 106 106 2 106 5 1 1 42 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 25 51 A U - - MP 107 106 2 111 6 2 2 41 60 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 108 106 2 111 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 2 111 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 2 111 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 26 50 A U - - MP 113 112 6 117 6 2 2 39 58 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 114 112 6 117 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 49 A U - - MP 119 118 6 123 6 2 2 37 56 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 120 118 6 123 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 28 48 G C - - MP 125 124 6 129 6 2 2 35 54 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 126 124 6 129 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 29 47 G C - - MP 131 130 6 135 6 2 2 33 52 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 132 130 6 135 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 30 46 U A - - MP 137 136 6 141 6 2 2 31 50 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 138 136 6 141 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 31 45 U A - - MP 143 142 6 147 6 2 2 29 48 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 144 142 6 147 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 32 44 G C - - MP 149 148 6 153 6 2 2 27 46 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 150 148 6 153 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 33 43 G C - - MP 155 154 6 159 6 2 2 25 44 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 156 154 6 159 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 34 42 u a - - MP 161 160 6 165 6 2 2 23 42 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.337 -3.311 -3.280 0.291 -2.384 -3.901 1.883 -3.050 -3.306 0.530 -3.726 -1.396 2.265 -3.515 1.722 -2.230 ML 162 160 6 165 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 35 41 G C - - MP 167 166 6 171 4 2 2 21 40 -6.847 -7.054 -0.057 -5.468 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 168 166 6 171 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 170 166 6 171 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 171 171 5 171 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 172 172 6 172 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 36 - U - - - ML 173 172 6 175 3 1 1 18 36 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 174 172 6 175 3 0 0 17 36 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 37 - C - - - ML 176 175 3 178 3 1 1 16 35 -7.871 -0.022 -6.525 -1.517 1.558 -2.332 -0.976 D 177 175 3 178 3 0 0 16 34 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 38 - A - - - ML 179 178 3 181 3 1 1 15 33 -7.871 -0.022 -6.525 1.675 -2.184 -1.835 -1.708 D 180 178 3 181 3 0 0 15 33 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 39 - U - - - ML 182 181 3 184 3 1 1 13 32 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 183 181 3 184 3 0 0 13 32 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 40 - U - - - ML 185 184 3 187 2 1 1 1 1 * 0.000 -1.315 -1.342 -2.039 1.566 D 186 184 3 187 2 0 0 0 0 * 0.000 IL 187 187 3 187 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 188 187 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc390 ACC RF02056 DESC Salmonella sRNA STnc390 LENG 60 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 22:53:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02056/CM NSEQ 2 EFFN 1.621094 CKSUM 3186765806 STATS LOCAL MSV -8.0541 0.72733 STATS LOCAL VITERBI -9.2060 0.72733 STATS LOCAL FORWARD -3.3198 0.72733 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55201 1.55081 1.35939 1.14168 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.30056 3.11643 0.23873 2.69033 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.30056 3.11643 0.23873 2.69033 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.30056 3.11643 0.23873 2.69033 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.26193 2.28703 2.76176 0.31320 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.39032 0.32249 2.95334 2.02577 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.26193 2.28703 2.76176 0.31320 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.57281 1.27309 1.19374 1.56310 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.33372 3.73767 1.34732 1.46634 0.26236 1.09861 0.40547 8 0.42493 2.35801 2.16757 1.98690 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.06437 3.46832 3.46832 1.46634 0.26236 0.16822 1.86542 9 2.26193 2.28703 2.76176 0.31320 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23548 2.86014 2.62213 2.52693 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.59048 1.62697 2.28641 0.46703 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.53318 2.34655 1.52852 2.29550 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.82733 0.35256 2.54825 1.83432 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.34679 2.84152 0.24262 2.79007 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.26193 2.28703 2.76176 0.31320 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.26193 2.28703 2.76176 0.31320 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.26193 2.28703 2.76176 0.31320 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.39032 0.32249 2.95334 2.02577 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23548 2.86014 2.62213 2.52693 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.26193 2.28703 2.76176 0.31320 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 3.00456 0.28424 2.66936 2.05136 21 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.10626 2.71171 0.30650 2.57880 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.52061 1.78058 2.15992 0.45301 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.53472 2.45690 1.46375 2.33201 24 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.53296 2.34705 1.52853 2.29632 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.53309 2.34677 1.52852 2.29586 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.53323 2.34644 1.52852 2.29531 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.34777 2.84246 0.24232 2.79145 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.34709 2.84181 0.24253 2.79049 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.58482 1.62702 2.28443 0.46802 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.58414 1.62702 2.28419 0.46814 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.34561 2.84038 0.24298 2.78840 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.34527 2.84006 0.24308 2.78792 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.30315 1.36233 2.04716 0.66380 34 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.34475 2.83956 0.24324 2.78720 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.26193 2.28703 2.76176 0.31320 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.39032 0.32249 2.95334 2.02577 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.23548 2.86014 2.62213 2.52693 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.26193 2.28703 2.76176 0.31320 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.26193 2.28703 2.76176 0.31320 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.00349 0.28439 2.66894 2.05115 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.13279 2.20979 0.81421 2.07820 42 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.00495 0.28419 2.66951 2.05143 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.00593 0.28406 2.66989 2.05162 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.53334 2.46072 1.46358 2.33742 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.53322 2.46106 1.46357 2.33789 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.01045 0.28345 2.67166 2.05251 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.01275 0.28314 2.67256 2.05295 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.52981 1.78099 2.16265 0.45124 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.53185 1.78108 2.16326 0.45086 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.53451 1.78120 2.16405 0.45035 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.26193 2.28703 2.76176 0.31320 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.26193 2.28703 2.76176 0.31320 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.26193 2.28703 2.76176 0.31320 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.30056 3.11643 0.23873 2.69033 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.26193 2.28703 2.76176 0.31320 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.26193 2.28703 2.76176 0.31320 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.23548 2.86014 2.62213 2.52693 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.30056 3.11643 0.23873 2.69033 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.30056 3.11643 0.23873 2.69033 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //