INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc420 ACC RF02054 DESC Salmonella enterica sRNA STnc420 STATES 178 NODES 47 CLEN 58 W 76 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 06:53:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02054/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.801758 CKSUM 989771546 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 77.70 NC 42.60 EFP7GF -9.0347 0.71921 ECMLC 0.62267 -6.27083 3.24163 1600000 448294 0.002677 ECMGC 0.47369 -13.80558 -1.00148 1600000 172233 0.002322 ECMLI 0.61845 -4.02409 4.86491 1600000 292872 0.004097 ECMGI 0.50631 -9.37303 1.84440 1600000 117124 0.003415 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 98 -6.895 -7.102 -0.055 -5.516 IL 1 1 2 1 4 1 12 80 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 79 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 11 76 98 -7.915 -0.021 -6.569 -1.395 -1.407 -2.124 1.591 D 4 2 3 5 3 0 5 75 96 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 78 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 10 75 97 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 7 5 3 8 3 0 5 74 95 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 77 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 10 74 96 -7.915 -0.021 -6.569 -1.395 -1.407 -2.124 1.591 D 10 8 3 11 3 0 4 73 94 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 76 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 9 73 95 -8.309 -0.019 -6.626 -1.395 -1.407 -2.124 1.591 D 13 11 3 14 3 0 3 72 94 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 7 74 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 60 - G - - MR 15 14 3 17 5 1 8 72 94 -7.050 -0.040 -6.866 -7.078 -7.970 -1.475 -2.678 1.698 -2.065 D 16 14 3 17 5 0 2 71 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 5 73 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 59 G C - - MP 18 17 3 22 6 2 8 71 93 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -3.803 -2.593 -3.841 0.904 -4.426 -4.455 0.070 -4.168 -3.756 3.168 -4.172 1.110 -0.219 -3.849 -1.898 -2.739 ML 19 17 3 22 6 1 3 70 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 3 70 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 0 67 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 5 71 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 5 71 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 58 C G - - MP 24 23 6 28 6 2 7 69 91 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -4.453 -4.350 -4.159 -0.591 -2.898 -4.583 3.520 -3.699 -4.205 -0.337 -4.476 -2.296 0.625 -4.528 -0.603 -3.048 ML 25 23 6 28 6 1 3 68 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 2 68 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 66 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 4 69 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 4 69 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 57 C G - - MP 30 29 6 34 4 2 5 67 89 -6.895 -7.102 -0.055 -5.516 -4.453 -4.350 -4.159 -0.591 -2.898 -4.583 3.520 -3.699 -4.205 -0.337 -4.476 -2.296 0.625 -4.528 -0.603 -3.048 ML 31 29 6 34 4 1 2 67 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 1 67 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 0 66 87 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 3 68 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 3 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 36 35 6 38 3 1 4 65 87 -7.915 -0.021 -6.569 -1.395 -1.407 -2.124 1.591 D 37 35 6 38 3 0 0 63 85 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 2 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 39 38 3 41 3 1 4 64 86 -7.915 -0.021 -6.569 -1.475 -2.678 1.698 -2.065 D 40 38 3 41 3 0 0 62 84 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 2 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 42 41 3 44 3 1 3 63 85 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 43 41 3 44 3 0 0 61 83 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 2 65 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - c - - - ML 45 44 3 47 3 1 3 62 84 -7.915 -0.021 -6.569 -0.732 0.791 -1.525 0.400 D 46 44 3 47 3 0 0 60 82 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 1 64 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 48 47 3 50 3 1 2 61 82 -7.915 -0.021 -6.569 -1.475 -2.678 1.698 -2.065 D 49 47 3 50 3 0 0 59 81 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 1 63 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 51 50 3 53 3 1 2 60 81 -2.579 -0.283 -6.569 1.697 -2.272 -1.914 -1.805 D 52 50 3 53 3 0 0 56 78 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 61 83 -1.238 -0.880 -4.935 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - A - - - ML 54 53 3 56 3 1 2 56 75 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 55 53 3 56 3 0 0 55 74 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - A - - - ML 57 56 3 59 3 1 1 55 74 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 58 56 3 59 3 0 0 54 73 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - U - - - ML 60 59 3 62 3 1 1 54 73 -7.915 -0.021 -6.569 -1.395 -1.407 -2.124 1.591 D 61 59 3 62 3 0 0 52 72 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - a - - - ML 63 62 3 65 3 1 1 53 72 -7.915 -0.021 -6.569 0.981 -1.354 0.075 -0.783 D 64 62 3 65 3 0 0 51 71 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - C - - - ML 66 65 3 68 3 1 1 52 71 -7.915 -0.021 -6.569 -1.622 1.590 -2.442 -1.060 D 67 65 3 68 3 0 0 50 70 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 69 68 3 71 3 1 1 51 70 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 70 68 3 71 3 0 0 49 69 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 72 71 3 74 3 1 1 49 69 -7.915 -0.021 -6.569 -1.395 -1.407 -2.124 1.591 D 73 71 3 74 3 0 0 48 67 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - G - - - ML 75 74 3 77 3 1 1 48 67 -7.915 -0.021 -6.569 -1.475 -2.678 1.698 -2.065 D 76 74 3 77 3 0 0 47 66 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - A - - - ML 78 77 3 80 3 1 1 47 66 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 79 77 3 80 3 0 0 46 65 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 81 80 3 83 3 1 1 46 65 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 82 80 3 83 3 0 0 45 64 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - C - - - ML 84 83 3 86 3 1 1 45 64 -7.915 -0.021 -6.569 -1.622 1.590 -2.442 -1.060 D 85 83 3 86 3 0 0 44 63 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 87 86 3 89 3 1 1 44 63 -7.915 -0.021 -6.569 -1.475 -2.678 1.698 -2.065 D 88 86 3 89 3 0 0 43 62 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - A - - - ML 90 89 3 92 3 1 1 43 62 -8.309 -0.019 -6.626 1.697 -2.272 -1.914 -1.805 D 91 89 3 92 3 0 0 42 60 -5.620 -0.734 -1.403 IL 92 92 3 92 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 56 - U - - MR 93 92 3 95 3 1 1 42 61 -8.309 -0.019 -6.626 -1.395 -1.407 -2.124 1.591 D 94 92 3 95 3 0 0 40 59 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 55 - U - - MR 96 95 3 98 3 1 1 41 60 -8.309 -0.019 -6.626 -1.395 -1.407 -2.124 1.591 D 97 95 3 98 3 0 0 39 58 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 54 - A - - MR 99 98 3 101 5 1 1 40 59 -7.050 -0.040 -6.866 -7.078 -7.970 1.697 -2.272 -1.914 -1.805 D 100 98 3 101 5 0 0 39 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 29 53 A U - - MP 102 101 3 106 6 2 2 39 58 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.737 3.278 -4.036 -5.091 0.259 -3.784 -3.632 1.164 -4.175 -0.254 -0.159 -4.292 -1.682 -2.575 ML 103 101 3 106 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 52 A U - - MP 108 107 6 112 6 2 2 37 56 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.737 3.278 -4.036 -5.091 0.259 -3.784 -3.632 1.164 -4.175 -0.254 -0.159 -4.292 -1.682 -2.575 ML 109 107 6 112 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 51 A U - - MP 114 113 6 118 6 2 2 35 54 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.737 3.278 -4.036 -5.091 0.259 -3.784 -3.632 1.164 -4.175 -0.254 -0.159 -4.292 -1.682 -2.575 ML 115 113 6 118 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 50 a u - - MP 120 119 6 124 6 2 2 33 52 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -2.888 0.856 -3.014 2.452 -3.309 -4.027 0.621 -3.264 -2.980 1.731 -3.503 0.037 0.372 -3.262 -1.157 -1.998 ML 121 119 6 124 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 49 A U - - MP 126 125 6 130 6 2 2 31 50 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.737 3.278 -4.036 -5.091 0.259 -3.784 -3.632 1.164 -4.175 -0.254 -0.159 -4.292 -1.682 -2.575 ML 127 125 6 130 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 48 G C - - MP 132 131 6 136 6 2 2 29 48 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -4.649 -3.050 -4.740 0.262 -5.102 -4.657 -0.489 -4.976 -4.267 3.615 -4.610 -0.745 -0.877 -4.407 -2.522 -3.618 ML 133 131 6 136 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 35 47 C G - - MP 138 137 6 142 6 2 2 27 46 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -4.453 -4.350 -4.159 -0.591 -2.898 -4.583 3.520 -3.699 -4.205 -0.337 -4.476 -2.296 0.625 -4.528 -0.603 -3.048 ML 139 137 6 142 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 36 46 G C - - MP 144 143 6 148 6 2 2 25 44 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -4.649 -3.050 -4.740 0.262 -5.102 -4.657 -0.489 -4.976 -4.267 3.615 -4.610 -0.745 -0.877 -4.407 -2.522 -3.618 ML 145 143 6 148 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 37 45 C G - - MP 150 149 6 154 6 2 2 23 42 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -4.453 -4.350 -4.159 -0.591 -2.898 -4.583 3.520 -3.699 -4.205 -0.337 -4.476 -2.296 0.625 -4.528 -0.603 -3.048 ML 151 149 6 154 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 38 44 C G - - MP 156 155 6 160 4 2 2 21 40 -6.895 -7.102 -0.055 -5.516 -4.453 -4.350 -4.159 -0.591 -2.898 -4.583 3.520 -3.699 -4.205 -0.337 -4.476 -2.296 0.625 -4.528 -0.603 -3.048 ML 157 155 6 160 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - - - ML 162 161 6 164 3 1 1 18 36 -7.915 -0.021 -6.569 -1.395 -1.407 -2.124 1.591 D 163 161 6 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - G - - - ML 165 164 3 167 3 1 1 16 35 -7.915 -0.021 -6.569 -1.475 -2.678 1.698 -2.065 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 41 - A - - - ML 168 167 3 170 3 1 1 15 33 -7.915 -0.021 -6.569 1.697 -2.272 -1.914 -1.805 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 42 - U - - - ML 171 170 3 173 3 1 1 13 32 -7.915 -0.021 -6.569 -1.395 -1.407 -2.124 1.591 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 43 - C - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -1.622 1.590 -2.442 -1.060 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc420 ACC RF02054 DESC Salmonella enterica sRNA STnc420 LENG 58 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 06:53:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF02054/CM NSEQ 3 EFFN 2.282227 CKSUM 989771546 STATS LOCAL MSV -8.1655 0.71921 STATS LOCAL VITERBI -8.4877 0.71921 STATS LOCAL FORWARD -3.7462 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28912 1.55446 1.36535 1.35522 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 0.00000 * 1 2.58315 2.55169 3.09945 0.22134 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 2 0.15983 3.21067 2.93755 2.91158 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 3 2.58315 2.55169 3.09945 0.22134 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 4 2.58315 2.55169 3.09945 0.22134 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 5 2.06234 2.74608 0.30756 2.61148 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 6 3.16918 0.24728 2.93909 2.08644 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 7 3.16889 0.24732 2.93895 2.08639 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 8 2.58315 2.55169 3.09945 0.22134 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 9 2.67080 3.54458 0.15342 3.12010 9 G - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 10 0.15983 3.21067 2.93755 2.91158 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 11 2.00714 0.77372 2.57212 1.11486 11 c - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 12 2.67080 3.54458 0.15342 3.12010 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 13 0.15983 3.21067 2.93755 2.91158 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.25465 1.58663 3.90217 0.76262 0.62819 1.09861 0.40547 14 0.15983 3.21067 2.93755 2.91158 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 15 0.15983 3.21067 2.93755 2.91158 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 16 2.58315 2.55169 3.09945 0.22134 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 17 0.66594 2.43610 1.31135 2.04600 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 18 2.81160 0.20852 3.38731 2.36123 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 19 0.15983 3.21067 2.93755 2.91158 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 20 2.58315 2.55169 3.09945 0.22134 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 21 2.67080 3.54458 0.15342 3.12010 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 22 0.15983 3.21067 2.93755 2.91158 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 23 0.15983 3.21067 2.93755 2.91158 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 24 2.81160 0.20852 3.38731 2.36123 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 25 2.67080 3.54458 0.15342 3.12010 27 G - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 26 0.15983 3.21067 2.93755 2.91158 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 27 0.35423 2.73652 1.80675 2.66923 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 28 0.35400 2.73737 1.80690 2.67047 30 A - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 29 0.35396 2.73752 1.80692 2.67069 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 30 0.61026 2.37386 1.37171 2.20731 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 31 0.35406 2.73712 1.80685 2.67011 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 32 2.56614 3.20980 0.17444 3.14935 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 33 3.16445 0.24782 2.93686 2.08563 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 34 2.56537 3.20889 0.17462 3.14809 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 35 3.16306 0.24798 2.93621 2.08539 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 36 3.16252 0.24804 2.93595 2.08529 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 37 2.58315 2.55169 3.09945 0.22134 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 38 2.67080 3.54458 0.15342 3.12010 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 39 0.15983 3.21067 2.93755 2.91158 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 40 2.58315 2.55169 3.09945 0.22134 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 41 2.81160 0.20852 3.38731 2.36123 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 42 2.36140 3.10296 0.21445 2.92231 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 43 2.36165 3.10329 0.21437 2.92272 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 44 3.35060 0.20645 3.04302 2.26545 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 45 2.36233 3.10421 0.21417 2.92383 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 46 3.35345 0.20619 3.04427 2.26600 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 47 2.89800 2.09766 2.54953 0.29571 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 48 2.43005 1.10706 2.17505 0.75964 50 u - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 49 2.90135 2.09805 2.55078 0.29526 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 50 2.90384 2.09834 2.55170 0.29494 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 51 2.90720 2.09872 2.55294 0.29450 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 52 0.15983 3.21067 2.93755 2.91158 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 53 2.58315 2.55169 3.09945 0.22134 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 54 2.58315 2.55169 3.09945 0.22134 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 55 2.36537 3.10832 0.21326 2.92882 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 56 2.36669 3.11009 0.21286 2.93097 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 57 2.85100 0.51226 2.56369 1.32406 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04123 3.90217 3.90217 1.46634 0.26236 1.09861 0.40547 58 2.67080 3.54458 0.15342 3.12010 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.02083 3.88177 * 1.46634 0.26236 0.00000 * //