INFERNAL1/a [1.1.4 | Dec 2020] NAME STnc450 ACC RF02051 DESC Enterobacterial sRNA STnc450 STATES 180 NODES 47 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:46:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 3.594727 CKSUM 4086404259 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.40 NC 34.50 EFP7GF -11.6229 0.71935 ECMLC 0.55959 -9.29671 1.56972 1600000 524802 0.002287 ECMGC 0.45032 -15.72840 -2.97362 1600000 124886 0.003203 ECMLI 0.63447 -5.72784 3.12790 1600000 330627 0.003629 ECMGI 0.50874 -10.90053 -0.23004 1600000 91125 0.004390 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 73 92 -7.507 -7.714 -0.036 -6.128 IL 1 1 2 1 4 1 16 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 15 73 92 -8.851 -0.013 -7.169 -3.005 1.842 -3.810 -2.185 D 4 2 3 5 3 0 12 72 91 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 15 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 59 - U - - MR 6 5 3 8 3 1 14 72 91 -8.851 -0.013 -7.169 -1.697 -1.019 -2.447 1.592 D 7 5 3 8 3 0 11 70 90 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 58 - g - - MR 9 8 3 11 3 1 13 71 90 -8.851 -0.013 -7.169 0.654 -1.963 0.842 -1.403 D 10 8 3 11 3 0 10 69 89 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 57 - U - - MR 12 11 3 14 3 1 12 70 89 -8.851 -0.013 -7.169 0.139 -1.179 -1.512 1.075 D 13 11 3 14 3 0 10 68 88 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 56 - G - - MR 15 14 3 17 3 1 11 69 88 -8.851 -0.013 -7.169 -1.103 -2.933 1.683 -2.383 D 16 14 3 17 3 0 9 67 87 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 55 - U - - MR 18 17 3 20 3 1 10 68 87 -8.851 -0.013 -7.169 -1.354 -1.499 -1.455 1.531 D 19 17 3 20 3 0 9 67 86 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 10 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 54 - A - - MR 21 20 3 23 2 1 9 67 86 -8.968 -0.003 1.177 -1.347 -0.889 -0.311 D 22 20 3 23 2 0 8 66 85 -4.432 -0.068 IR 23 23 3 23 2 1 10 68 87 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 8 ] - - - - - - B 24 23 3 25 60 0 8 66 85 [ BEGL 9 ] - - - - - - S 25 24 1 26 4 0 0 24 43 -0.036 -7.142 -6.550 -7.190 [ MATP 10 ] 2 12 G C - - MP 26 25 1 30 6 2 2 24 43 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -5.751 -3.590 -6.024 -0.514 -6.630 -5.067 -1.745 -6.283 -4.927 3.809 -5.205 -1.346 -2.110 -5.111 -3.850 -4.887 ML 27 25 1 30 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 1 30 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 1 30 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 3 11 C G - - MP 32 31 6 36 6 2 2 22 41 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -4.715 -4.760 -4.520 -1.207 -3.415 -0.006 3.591 -4.214 -4.598 -1.044 -4.882 -2.951 0.011 -4.847 -1.209 -3.517 ML 33 31 6 36 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 4 10 U A - - MP 38 37 6 42 6 2 2 20 39 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -5.586 -5.427 -5.258 -1.654 -3.949 -5.689 0.384 -4.726 -5.255 -1.550 -5.559 -3.291 3.731 -5.663 -1.593 -3.877 ML 39 37 6 42 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 9 A U - - MP 44 43 6 48 4 2 2 18 37 -7.507 -7.714 -0.036 -6.128 -4.804 -3.623 -4.692 3.729 -5.616 -6.818 -1.248 -4.665 -4.610 -0.026 -5.204 -0.972 -1.654 -5.793 -3.182 -3.513 ML 45 43 6 48 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 47 43 6 48 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 48 48 5 48 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 49 49 6 49 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 6 - U - - - ML 50 49 6 52 3 1 1 14 33 -8.490 -0.014 -7.144 -2.485 -2.315 -3.254 1.814 D 51 49 6 52 3 0 0 15 33 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 7 - A - - - ML 53 52 3 55 3 1 1 13 31 -8.490 -0.014 -7.144 1.872 -3.424 -2.958 -3.075 D 54 52 3 55 3 0 0 13 32 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 8 - C - - - ML 56 55 3 58 2 1 1 1 1 * 0.000 -3.005 1.842 -3.810 -2.185 D 57 55 3 58 2 0 0 0 0 * 0.000 IL 58 58 3 58 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 17 ] - - - - - - E 59 58 3 -1 0 0 0 0 0 [ BEGR 18 ] - - - - - - S 60 24 1 61 3 0 1 54 74 -8.490 -0.014 -7.144 IL 61 61 2 61 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - c - - - ML 62 61 2 64 3 1 1 54 73 -8.490 -0.190 -3.051 -0.654 0.575 -0.731 0.347 D 63 61 2 64 3 0 0 53 72 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - a - - - ML 65 64 3 67 3 1 1 53 72 -8.316 -0.016 -6.970 0.686 -1.005 -0.360 0.156 D 66 64 3 67 3 0 0 52 71 -7.503 -0.463 -1.894 IL 67 67 3 67 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - C - - - ML 68 67 3 70 5 1 1 52 71 -7.561 -0.028 -7.377 -7.589 -8.481 -1.615 1.519 -1.501 -1.141 D 69 67 3 70 5 0 0 51 70 -4.959 -0.803 -4.221 -2.596 -2.508 IL 70 70 3 70 5 1 1 53 72 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 53 U A - - MP 71 70 3 75 6 2 2 51 70 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -3.952 -3.897 -3.948 -0.351 -3.189 -4.647 1.021 -3.793 -3.956 -0.213 -4.415 -1.956 3.279 -4.187 -0.935 0.326 ML 72 70 3 75 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 3 75 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 3 75 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 52 G C - - MP 77 76 6 81 6 2 2 49 68 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -5.019 -3.265 -5.099 0.052 -6.047 -4.955 -1.191 -5.517 -4.633 3.641 -4.952 0.229 -1.465 -4.681 -3.237 -3.981 ML 78 76 6 81 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 51 A U - - MP 83 82 6 87 6 2 2 47 66 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -4.309 -3.459 -4.255 3.558 -4.807 -5.758 -0.700 -4.350 -4.284 0.283 -4.849 -0.981 -1.019 -4.902 -2.555 -0.318 ML 84 82 6 87 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 50 A U - - MP 89 88 6 93 4 2 2 45 64 -7.507 -7.714 -0.036 -6.128 -4.222 -3.054 -4.312 3.472 -5.458 -6.277 -1.106 -4.418 -4.088 0.646 -4.696 0.839 -1.287 -5.123 -2.995 -3.061 ML 90 88 6 93 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 92 88 6 93 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 93 93 5 93 4 1 1 47 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 94 94 6 94 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - A - - - ML 95 94 6 97 3 1 1 43 62 -8.490 -0.014 -7.144 1.194 -0.879 -1.437 -0.325 D 96 94 6 97 3 0 0 42 61 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - u - - - ML 98 97 3 100 3 1 1 42 60 -8.490 -0.014 -7.144 -0.031 -0.564 -1.405 0.976 D 99 97 3 100 3 0 0 41 60 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - u - - - ML 101 100 3 103 3 1 1 41 59 -8.851 -0.013 -7.169 0.130 -0.964 -1.241 0.978 D 102 100 3 103 3 0 0 39 58 -5.620 -0.734 -1.403 IL 103 103 3 103 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 49 - U - - MR 104 103 3 106 5 1 1 40 58 -7.561 -0.028 -7.377 -7.589 -8.481 -1.081 -1.359 -0.873 1.374 D 105 103 3 106 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 106 106 3 106 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 48 a u - - MP 107 106 3 111 6 2 2 39 57 -9.347 -9.286 -0.058 -5.024 -8.342 -8.737 -3.827 -2.745 -3.889 2.808 -4.703 -5.108 -0.329 -4.165 -3.831 2.046 -4.349 1.290 -0.554 -4.224 -2.233 -2.735 ML 108 106 3 111 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 3 111 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 3 111 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 47 C G - - MP 113 112 6 117 6 2 2 37 55 -9.307 -9.247 -0.018 -8.023 -8.303 -8.698 -4.494 -4.506 -4.201 -0.687 -2.880 -4.619 3.305 -3.680 -4.228 -0.523 -4.529 -2.512 0.690 -4.549 1.235 -3.059 ML 114 112 6 117 6 1 1 35 54 -6.760 -7.106 -0.784 -1.515 -6.956 -4.485 -0.137 -0.470 -0.751 0.827 MR 115 112 6 117 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 46 C G - - MP 119 118 6 123 6 2 2 35 53 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -4.857 -4.858 -4.486 -0.992 -3.080 -4.849 3.530 -3.912 -4.523 -0.827 -4.780 -2.831 1.071 -4.874 -0.751 -3.333 ML 120 118 6 123 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 45 G C - - MP 125 124 6 129 6 2 2 33 51 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -4.909 -3.266 -4.977 0.012 -5.595 -4.802 -0.939 -5.394 -4.577 3.648 -1.046 -1.006 -1.254 -4.529 -2.949 -3.923 ML 126 124 6 129 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 44 G C - - MP 131 130 6 135 6 2 2 31 49 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -5.175 -3.337 -5.287 -0.069 -6.216 -4.981 -1.335 -5.692 -4.704 3.691 -5.014 -0.098 -1.615 -4.775 -3.394 -4.167 ML 132 130 6 135 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 43 c g - - MP 137 136 6 141 6 2 2 29 47 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -4.300 -4.251 -4.109 -0.398 -2.898 -4.629 2.764 -3.652 -4.108 -0.213 -4.469 -2.175 2.581 -4.408 -0.547 -2.941 ML 138 136 6 141 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 42 u a - - MP 143 142 6 147 6 2 2 27 45 -9.347 -9.286 -0.018 -8.063 -8.342 -8.737 -4.010 -3.966 -3.907 -0.154 -2.829 -4.510 2.483 -3.539 -3.897 0.024 -4.307 -1.910 2.615 -4.164 0.397 -2.756 ML 144 142 6 147 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 41 C G - - MP 149 148 6 153 4 2 2 25 43 -7.507 -7.714 -0.036 -6.128 -5.491 -5.530 -5.131 -1.738 -1.164 -5.482 3.750 -4.703 -5.241 -1.598 -5.405 -3.572 -0.349 -5.556 -1.581 -4.082 ML 150 148 6 153 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 152 148 6 153 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 153 153 5 153 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 155 154 6 157 3 1 1 22 40 -8.490 -0.014 -7.144 1.872 -3.424 -2.958 -3.075 D 156 154 6 157 3 0 0 21 40 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - c - - - ML 158 157 3 160 3 1 1 20 39 -8.490 -0.014 -7.144 0.082 0.710 -0.816 -0.439 D 159 157 3 160 3 0 0 20 39 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - u - - - ML 161 160 3 163 3 1 1 19 38 -8.490 -0.014 -7.144 -0.562 0.208 -1.601 0.878 D 162 160 3 163 3 0 0 19 37 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - u - - - ML 164 163 3 166 3 1 1 18 36 -2.642 -0.264 -7.144 -0.470 -0.216 0.041 0.473 D 165 163 3 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 18 36 -2.052 -0.471 -4.752 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - C - - - ML 167 166 3 169 3 1 1 16 35 -2.071 -0.406 -7.144 -3.005 1.842 -3.810 -2.185 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 16 34 -2.279 -0.392 -4.979 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - U - - - ML 170 169 3 172 3 1 1 14 33 -8.490 -0.014 -7.144 -1.537 -0.665 -2.294 1.496 D 171 169 3 172 3 0 0 15 33 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - u - - - ML 173 172 3 175 3 1 1 13 31 -8.490 -0.014 -7.144 0.390 -1.135 -1.403 0.892 D 174 172 3 175 3 0 0 13 32 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - C - - - ML 176 175 3 178 2 1 1 1 1 * 0.000 -3.005 1.842 -3.810 -2.185 D 177 175 3 178 2 0 0 0 0 * 0.000 IL 178 178 3 178 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 179 178 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME STnc450 ACC RF02051 DESC Enterobacterial sRNA STnc450 LENG 57 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:46:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 12 EFFN 5.153320 CKSUM 4086404259 STATS LOCAL MSV -7.6450 0.71935 STATS LOCAL VITERBI -8.2482 0.71935 STATS LOCAL FORWARD -3.2842 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49556 1.28594 1.51276 1.27588 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 0.00000 * 1 3.98108 0.06714 4.48462 3.35281 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 2 3.25863 4.20141 0.07151 4.16041 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 3 3.67025 0.15248 3.50738 2.45370 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 4 4.25859 2.95997 4.13607 0.08550 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 5 0.10582 4.03426 2.77472 3.89490 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 6 3.56119 3.37799 4.10314 0.08234 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 7 0.05507 4.22259 3.86743 4.01683 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 8 3.98108 0.06714 4.48462 3.35281 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 9 4.09314 3.16817 3.83357 0.08382 9 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 10 0.09832 4.32183 2.78771 3.97365 10 A - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 11 2.73312 2.14224 0.24197 3.42625 11 G - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 12 4.23246 0.09013 4.02800 2.92138 12 C - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 13 2.00135 0.90851 1.91741 1.15602 13 c - - - 1.38629 1.38629 1.38629 1.38629 0.16350 4.41773 1.97491 1.46634 0.26236 1.09861 0.40547 14 0.87575 2.19028 1.64228 1.28003 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.02801 4.28224 4.28224 1.46634 0.26236 0.16027 1.90995 15 2.94348 0.23564 2.54272 2.54335 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 16 3.17004 2.17520 2.98127 0.23107 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 17 2.85260 3.78916 0.11204 3.66191 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 18 0.20299 3.70969 2.55718 2.50465 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 19 0.26895 3.88531 1.67380 3.58476 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 20 0.48892 2.06855 2.58084 1.68940 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 21 1.42524 1.82911 2.50697 0.65879 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 22 1.29778 2.18622 2.36501 0.65282 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 23 0.67338 3.28958 0.90046 3.07116 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 24 3.25132 0.40836 3.14331 1.37281 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 25 3.45832 0.25624 3.31989 1.84261 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 26 2.92214 3.72137 0.11066 3.62176 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 27 2.92569 3.86612 0.10343 3.74252 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 28 3.13426 0.79062 2.92048 0.80074 28 c - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 29 2.92013 1.00366 2.69595 0.66932 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 30 4.12852 0.09083 4.00199 2.94799 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 31 0.05507 4.22259 3.86743 4.01683 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 32 1.35215 0.80890 2.00152 1.82735 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 33 1.88658 1.19271 2.69082 0.73984 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 34 1.83296 1.52070 1.30864 1.04607 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.22278 1.67319 4.41773 0.12394 2.14929 1.09861 0.40547 35 3.98108 0.06714 4.48462 3.35281 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.33768 1.29276 4.41773 0.08567 2.49977 1.09861 0.40547 36 2.77789 1.91088 3.30625 0.28339 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 37 1.09368 2.35527 2.53822 0.71102 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 38 3.98108 0.06714 4.48462 3.35281 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 39 2.71292 4.15664 0.10715 3.93198 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 40 0.83493 2.86797 0.81833 2.68660 42 g - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 41 0.86917 3.09110 0.73350 2.90002 43 g - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 42 3.94367 0.16201 3.72394 2.24386 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 43 3.85493 0.16856 2.76642 2.64428 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 44 2.02760 3.52618 0.22048 3.30238 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.08798 4.41773 2.62891 1.46634 0.26236 1.09861 0.40547 45 2.43619 3.36459 0.18036 3.14753 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02600 4.35576 4.35576 1.46634 0.26236 0.28842 1.38409 46 3.30484 1.41443 3.08662 0.39367 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 47 2.42124 2.57958 2.03711 0.34959 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 48 3.75966 2.59121 3.65475 0.13249 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 49 3.75511 2.90240 3.50693 0.11460 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 50 3.83015 0.19497 3.61031 2.05268 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 51 0.40072 3.16511 2.00851 1.87232 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 52 0.50867 2.48998 2.08036 1.65596 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 53 2.64118 2.69537 2.51152 0.24838 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 54 2.29475 3.75416 0.17197 3.38768 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 55 1.29406 2.40436 2.63912 0.57253 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 56 0.89677 3.06289 0.73781 2.70000 58 g - - : 1.38629 1.38629 1.38629 1.38629 0.02442 4.41773 4.41773 1.46634 0.26236 1.09861 0.40547 57 2.89797 2.20492 3.41866 0.22083 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.01228 4.40560 * 1.46634 0.26236 0.00000 * //