INFERNAL1/a [1.1.4 | Dec 2020] NAME HOTTIP_1 ACC RF02040 DESC HOXA transcript at the distal tip, conserved region 1 STATES 175 NODES 59 CLEN 57 W 133 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:45:22 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 3.934082 CKSUM 2019010261 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.80 NC 41.40 EFP7GF -9.8971 0.71900 ECMLC 0.81349 -8.16621 0.08694 1600000 988481 0.001214 ECMGC 0.33411 -25.43905 -5.75232 1600000 287509 0.001391 ECMLI 0.56743 -10.74059 0.71104 1600000 796598 0.001506 ECMGI 0.36199 -16.67366 -0.47194 1600000 140968 0.002838 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 133 214 -7.598 -7.805 -0.034 -6.219 IL 1 1 2 1 4 1 18 135 216 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 135 216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 17 133 214 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 4 2 3 5 3 0 13 130 211 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 19 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 17 132 213 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 7 5 3 8 3 0 12 129 210 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 18 139 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 16 131 212 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 10 8 3 11 3 0 11 128 208 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 18 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 15 129 210 -5.939 -0.048 -5.939 1.854 -3.136 -2.837 -2.922 D 13 11 3 14 3 0 11 126 207 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 17 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 14 128 209 -5.939 -0.048 -5.939 -0.564 -2.340 1.524 -2.002 D 16 14 3 17 3 0 10 125 205 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 16 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 14 127 207 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 19 17 3 20 3 0 9 124 204 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 15 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 13 125 206 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 22 20 3 23 3 0 8 122 202 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 14 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 12 124 204 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 25 23 3 26 3 0 8 121 201 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 14 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 11 123 203 -5.939 -0.048 -5.939 1.854 -3.136 -2.837 -2.922 D 28 26 3 29 3 0 7 120 200 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 13 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - g - - - ML 30 29 3 32 3 1 11 121 201 -5.939 -0.048 -5.939 -0.313 -0.121 0.760 -0.781 D 31 29 3 32 3 0 6 118 198 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 12 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 10 120 200 -5.939 -0.048 -5.939 -1.383 -1.898 1.450 -0.698 D 34 32 3 35 3 0 6 117 197 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 11 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 9 119 198 -5.939 -0.048 -5.939 -0.250 -0.968 -0.354 0.900 D 37 35 3 38 3 0 5 116 195 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 10 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 8 117 197 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 40 38 3 41 3 0 5 115 194 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 9 125 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 7 116 196 -5.939 -0.206 -3.102 -2.295 -3.270 1.835 -2.996 D 43 41 3 44 3 0 4 114 193 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 9 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 7 115 194 -5.786 -0.053 -5.786 -2.064 -2.949 1.797 -2.671 D 46 44 3 47 3 0 4 113 192 -13.159 -0.356 -2.193 IL 47 47 3 47 3 1 8 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 6 114 193 -5.939 -0.048 -5.939 -1.716 1.164 -1.921 0.252 D 49 47 3 50 3 0 1 110 189 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 8 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 6 112 191 -5.939 -0.048 -5.939 -1.389 -1.910 1.457 -0.720 D 52 50 3 53 3 0 1 109 188 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 7 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 5 111 190 -5.939 -0.048 -5.939 -2.674 1.787 -2.911 -1.943 D 55 53 3 56 3 0 0 108 186 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 7 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - G - - - ML 57 56 3 59 3 1 5 109 188 -5.939 -0.048 -5.939 -0.020 -2.028 1.296 -1.677 D 58 56 3 59 3 0 0 106 185 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 6 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 4 108 187 -5.939 -0.048 -5.939 -1.955 1.429 -2.179 -0.271 D 61 59 3 62 3 0 0 105 183 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 5 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 4 107 185 -5.939 -0.048 -5.939 -0.971 -0.557 1.020 -0.354 D 64 62 3 65 3 0 0 104 182 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 5 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 1 3 105 183 -3.193 -0.194 -5.939 0.346 -1.826 1.061 -1.470 D 67 65 3 68 3 0 0 102 180 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 4 105 183 -4.899 -0.049 -12.543 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - U - - - ML 69 68 3 71 3 1 3 104 182 -5.939 -0.048 -5.939 -2.413 -1.957 -2.600 1.761 D 70 68 3 71 3 0 0 101 179 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 4 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 72 71 3 74 3 1 2 103 181 -5.939 -0.048 -5.939 -1.379 -1.356 -0.563 1.349 D 73 71 3 74 3 0 0 100 177 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 3 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 75 74 3 77 3 1 2 102 179 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 76 74 3 77 3 0 0 98 176 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 3 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 78 77 3 80 3 1 2 100 178 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 79 77 3 80 3 0 0 97 174 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 3 108 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 81 80 3 83 3 1 1 99 176 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 82 80 3 83 3 0 0 95 173 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - U - - - ML 84 83 3 86 3 1 1 97 175 -5.939 -0.048 -5.939 -2.413 -1.957 -2.600 1.761 D 85 83 3 86 3 0 0 94 171 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 2 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - U - - - ML 87 86 3 89 3 1 1 96 173 -5.939 -0.048 -5.939 -2.413 -1.957 -2.600 1.761 D 88 86 3 89 3 0 0 93 169 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 2 104 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - G - - - ML 90 89 3 92 3 1 1 95 171 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 91 89 3 92 3 0 0 91 168 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - C - - - ML 93 92 3 95 3 1 1 93 170 -5.939 -0.048 -5.939 -0.480 1.377 -1.882 -1.270 D 94 92 3 95 3 0 0 90 166 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 1 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 96 95 3 98 3 1 1 92 168 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 97 95 3 98 3 0 0 88 164 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 1 90 166 -5.939 -0.048 -5.939 1.854 -3.136 -2.837 -2.922 D 100 98 3 101 3 0 0 87 163 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - C - - - ML 102 101 3 104 3 1 1 89 165 -5.939 -0.048 -5.939 -1.747 1.208 -1.954 0.180 D 103 101 3 104 3 0 0 85 161 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 105 104 3 107 3 1 1 87 163 -5.939 -0.048 -5.939 -2.674 1.787 -2.911 -1.943 D 106 104 3 107 3 0 0 84 159 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 108 107 3 110 3 1 1 86 161 -5.939 -0.048 -5.939 -1.673 -0.308 -1.872 1.382 D 109 107 3 110 3 0 0 82 158 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 111 110 3 113 3 1 1 84 160 -5.939 -0.048 -5.939 -0.564 -2.340 1.524 -2.002 D 112 110 3 113 3 0 0 81 156 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - a - - - ML 114 113 3 116 3 1 1 83 158 -5.939 -0.048 -5.939 0.608 -1.002 0.112 -0.159 D 115 113 3 116 3 0 0 79 154 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - G - - - ML 117 116 3 119 3 1 1 81 156 -5.939 -0.048 -5.939 -0.125 -2.089 1.349 -1.739 D 118 116 3 119 3 0 0 78 152 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - - - ML 120 119 3 122 3 1 1 80 154 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 121 119 3 122 3 0 0 76 151 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - C - - - ML 123 122 3 125 3 1 1 78 153 -5.939 -0.048 -5.939 -2.674 1.787 -2.911 -1.943 D 124 122 3 125 3 0 0 75 149 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - G - - - ML 126 125 3 128 3 1 1 77 151 -5.939 -0.048 -5.939 -0.498 -0.745 1.157 -1.104 D 127 125 3 128 3 0 0 73 147 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - G - - - ML 129 128 3 131 3 1 1 75 149 -5.939 -0.048 -5.939 -0.649 -2.387 1.551 -2.051 D 130 128 3 131 3 0 0 71 145 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - U - - - ML 132 131 3 134 3 1 1 73 147 -5.939 -0.048 -5.939 -1.704 -0.406 -1.905 1.418 D 133 131 3 134 3 0 0 70 143 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - G - - - ML 135 134 3 137 3 1 1 72 145 -5.939 -0.048 -5.939 -0.564 -2.340 1.524 -2.002 D 136 134 3 137 3 0 0 68 141 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - G - - - ML 138 137 3 140 3 1 1 70 143 -5.939 -0.048 -5.939 -0.573 -2.345 1.527 -2.006 D 139 137 3 140 3 0 0 66 139 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - G - - - ML 141 140 3 143 3 1 1 68 141 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 142 140 3 143 3 0 0 65 137 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 78 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - G - - - ML 144 143 3 146 3 1 1 67 139 -5.939 -0.048 -5.939 -1.404 -0.818 1.444 -1.582 D 145 143 3 146 3 0 0 63 135 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - A - - - ML 147 146 3 149 3 1 1 65 137 -5.939 -0.048 -5.939 1.854 -3.136 -2.837 -2.922 D 148 146 3 149 3 0 0 61 132 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - C - - - ML 150 149 3 152 3 1 1 63 135 -5.939 -0.048 -5.939 -2.674 1.787 -2.911 -1.943 D 151 149 3 152 3 0 0 59 130 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - A - - - ML 153 152 3 155 3 1 1 61 133 -5.939 -0.048 -5.939 1.854 -3.136 -2.837 -2.922 D 154 152 3 155 3 0 0 57 128 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - G - - - ML 156 155 3 158 3 1 1 59 130 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 157 155 3 158 3 0 0 54 125 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - G - - - ML 159 158 3 161 3 1 1 57 128 -5.939 -0.048 -5.939 -2.295 -3.270 1.835 -2.996 D 160 158 3 161 3 0 0 52 122 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - U - - - ML 162 161 3 164 3 1 1 54 125 -5.939 -0.048 -5.939 -0.403 -1.311 -1.516 1.317 D 163 161 3 164 3 0 0 48 118 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - C - - - ML 165 164 3 167 3 1 1 52 121 -5.939 -0.048 -5.939 -2.674 1.787 -2.911 -1.943 D 166 164 3 167 3 0 0 44 113 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - A - - - ML 168 167 3 170 3 1 1 48 117 -5.939 -0.048 -5.939 1.854 -3.136 -2.837 -2.922 D 169 167 3 170 3 0 0 32 101 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -2.295 -3.270 1.835 -2.996 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME HOTTIP_1 ACC RF02040 DESC HOXA transcript at the distal tip, conserved region 1 LENG 57 MAXL 133 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:45:22 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 7 EFFN 3.934082 STATS LOCAL MSV -7.5368 0.71900 STATS LOCAL VITERBI -8.7534 0.71900 STATS LOCAL FORWARD -3.6114 0.71900 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65270 1.72646 0.77488 1.77315 1.38629 1.38629 1.38629 1.38629 0.01917 5.26660 4.28142 0.39730 1.11515 0.00000 * 1 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 2 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 3 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 4 0.10136 3.56017 3.35278 3.41199 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 5 1.77753 3.00845 0.32969 2.77369 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 6 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 7 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 8 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 9 0.10136 3.56017 3.35278 3.41199 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 10 1.60345 1.47003 0.85949 1.92756 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 11 2.34504 2.70158 0.38130 1.87028 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 12 1.55976 2.05755 1.63168 0.76261 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 13 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 14 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.14250 4.11645 2.14980 1.46634 0.26236 1.09861 0.40547 15 2.81670 3.43028 0.14091 3.23773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03691 4.01086 4.01086 1.46634 0.26236 0.24674 1.52024 16 2.57584 0.57938 2.71780 1.21185 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 17 2.34908 2.71013 0.37649 1.88555 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 18 3.24007 0.14784 3.40436 2.73277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 19 1.40002 2.79218 0.48789 2.54848 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 20 2.74135 0.39578 2.89633 1.57438 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 21 2.05902 1.77256 0.67927 1.63201 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 22 1.14628 2.65217 0.65117 2.40519 - G - - : 1.38629 1.38629 1.38629 1.38629 0.13427 2.21329 4.11645 0.03409 3.39568 1.09861 0.40547 23 3.05914 2.74245 3.18847 0.16555 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 24 2.34216 2.32612 1.77681 0.45094 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 25 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 26 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 27 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 28 3.05914 2.74245 3.18847 0.16555 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 29 3.05914 2.74245 3.18847 0.16555 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 30 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 31 1.71903 0.43189 2.69104 2.26658 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 32 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 33 0.10136 3.56017 3.35278 3.41199 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 34 2.59704 0.54863 2.74058 1.26149 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 35 3.24007 0.14784 3.40436 2.73277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 36 2.54597 1.59998 2.68354 0.42866 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 37 1.77753 3.00845 0.32969 2.77369 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 38 0.96508 2.08049 1.30850 1.49631 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 39 1.47263 2.83426 0.45092 2.59190 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 40 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 41 3.24007 0.14784 3.40436 2.73277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 42 1.73160 1.90238 0.58426 2.15184 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 43 1.83625 3.04098 0.31132 2.80807 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 44 2.56776 1.66765 2.70646 0.40372 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 45 1.77753 3.00845 0.32969 2.77369 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 46 1.78319 3.01160 0.32786 2.77701 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 47 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 48 2.35919 1.95302 0.38548 2.48254 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 49 0.10136 3.56017 3.35278 3.41199 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 50 3.24007 0.14784 3.40436 2.73277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 51 0.10136 3.56017 3.35278 3.41199 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 52 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 53 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 54 1.66592 2.29531 2.43726 0.47344 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 55 3.24007 0.14784 3.40436 2.73277 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 56 0.10136 3.56017 3.35278 3.41199 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03315 4.11645 4.11645 1.46634 0.26236 1.09861 0.40547 57 2.97687 3.65318 0.11451 3.46299 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //