INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1827 ACC RF02028 DESC microRNA mir-1827 STATES 202 NODES 47 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 18:49:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF02028/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.338867 CKSUM 3736903992 NULL 0.000 0.000 0.000 0.000 GA 82.00 TC 82.40 NC 81.70 EFP7GF -7.3330 0.71915 ECMLC 0.70141 -4.55353 3.54408 1600000 351445 0.003414 ECMGC 0.44230 -15.15797 -2.46974 1600000 109474 0.003654 ECMLI 0.68575 -2.75324 4.88070 1600000 225261 0.005327 ECMGI 0.50047 -9.65309 0.75582 1600000 73187 0.005465 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.683 -6.890 -0.318 -2.476 IL 1 1 2 1 4 1 22 86 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 21 83 103 -7.500 -0.029 -6.154 -0.690 -0.842 -1.365 1.283 D 4 2 3 5 3 0 18 81 101 -7.247 -0.573 -1.638 IL 5 5 3 5 3 1 21 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 20 81 101 -7.720 -0.024 -6.374 -1.170 1.425 -1.967 -0.703 D 7 5 3 8 3 0 16 80 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 83 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 19 80 100 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 10 8 3 11 3 0 15 79 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 18 79 99 -8.128 -0.022 -6.446 -1.061 -2.191 1.569 -1.576 D 13 11 3 14 3 0 14 78 98 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 18 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 66 - U - - MR 15 14 3 17 3 1 18 78 98 -8.128 -0.022 -6.446 -1.050 -1.127 -1.757 1.466 D 16 14 3 17 3 0 12 77 97 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - A - - MR 18 17 3 20 3 1 17 77 97 -8.128 -0.022 -6.446 1.590 -1.887 -1.568 -1.386 D 19 17 3 20 3 0 11 76 96 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 64 - A - - MR 21 20 3 23 5 1 16 76 96 -6.883 -0.045 -6.698 -6.910 -7.802 1.590 -1.887 -1.568 -1.386 D 22 20 3 23 5 0 11 75 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 23 23 3 23 5 1 14 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 63 C G - - MP 24 23 3 28 6 2 15 75 95 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 25 23 3 28 6 1 12 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 3 28 6 1 12 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 7 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 13 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 13 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 62 A U - - MP 30 29 6 34 6 2 14 73 93 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.422 -2.555 -3.463 3.020 -3.620 -4.657 0.658 -3.525 -3.374 1.482 -3.903 -0.098 0.238 -3.905 -1.286 -2.322 ML 31 29 6 34 6 1 10 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 11 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 7 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 12 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 12 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 61 g u - - MP 36 35 6 40 4 2 12 71 91 -6.623 -7.868 -0.096 -4.322 -3.322 -2.220 -3.460 1.295 -3.934 -4.677 0.399 -3.529 -3.213 1.752 -3.721 2.685 0.037 -3.935 -1.540 -2.232 ML 37 35 6 40 4 1 9 71 91 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 10 70 90 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 6 69 88 -12.737 -14.007 -2.036 -0.404 IL 40 40 5 40 4 1 10 71 91 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 11 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 60 - A - - MR 42 41 6 44 5 1 10 69 89 -6.883 -0.045 -6.698 -6.910 -7.802 1.590 -1.887 -1.568 -1.386 D 43 41 6 44 5 0 6 68 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 9 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 59 C G - - MP 45 44 3 49 4 2 9 68 88 -6.623 -7.868 -0.096 -4.322 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 46 44 3 49 4 1 5 68 88 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 4 1 7 67 87 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 48 44 3 49 4 0 3 65 85 -12.737 -14.007 -2.036 -0.404 IL 49 49 5 49 4 1 7 68 88 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 8 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 58 - a - - MR 51 50 6 53 5 1 8 66 86 -6.883 -0.045 -6.698 -6.910 -7.802 0.835 -0.186 -0.946 -0.289 D 52 50 6 53 5 0 3 65 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 6 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 57 A U - - MP 54 53 3 58 6 2 8 65 85 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.422 -2.555 -3.463 3.020 -3.620 -4.657 0.658 -3.525 -3.374 1.482 -3.903 -0.098 0.238 -3.905 -1.286 -2.322 ML 55 53 3 58 6 1 4 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 3 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 1 62 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 5 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 5 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 56 C G - - MP 60 59 6 64 4 2 6 63 83 -6.683 -6.890 -0.064 -5.304 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 61 59 6 64 4 1 3 63 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 2 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 1 62 82 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 5 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 4 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - A - - - ML 66 65 6 68 3 1 5 61 81 -8.128 -0.022 -6.446 1.590 -1.887 -1.568 -1.386 D 67 65 6 68 3 0 0 60 79 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 3 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 55 - A - - MR 69 68 3 71 5 1 4 60 80 -6.883 -0.045 -6.698 -6.910 -7.802 1.590 -1.887 -1.568 -1.386 D 70 68 3 71 5 0 0 59 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 2 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 54 G C - - MP 72 71 3 76 6 2 6 59 79 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 73 71 3 76 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 53 C G - - MP 78 77 6 82 6 2 5 57 77 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 79 77 6 82 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 2 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 52 C G - - MP 84 83 6 88 6 2 4 55 75 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 85 83 6 88 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 51 U A - - MP 90 89 6 94 4 2 2 53 73 -6.683 -6.890 -0.064 -5.304 -3.721 -3.524 -3.608 0.143 -2.658 -4.213 1.657 -3.318 -3.619 0.483 -4.014 -1.436 3.043 -3.887 -0.346 -2.485 ML 91 89 6 94 4 1 1 53 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 53 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 52 72 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 54 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - U - - - ML 96 95 6 98 5 1 1 50 70 -6.883 -0.045 -6.698 -6.910 -7.802 -1.050 -1.127 -1.757 1.466 D 97 95 6 98 5 0 0 49 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 1 51 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 50 C G - - MP 99 98 3 103 6 2 2 49 69 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 100 98 3 103 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 49 a u - - MP 105 104 6 109 6 2 2 47 67 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.097 -2.243 -3.198 2.457 -3.570 -4.337 0.638 -3.386 -3.117 1.835 -3.648 1.326 0.353 -3.523 -1.260 -2.084 ML 106 104 6 109 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 48 G C - - MP 111 110 6 115 6 2 2 45 65 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 112 110 6 115 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 47 c g - - MP 117 116 6 121 6 2 2 43 63 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -2.849 -2.763 -2.927 0.506 -2.411 -3.614 2.819 -2.945 -2.948 0.787 0.035 -0.994 1.092 -3.099 -0.275 -1.992 ML 118 116 6 121 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 46 C G - - MP 123 122 6 127 6 2 2 41 61 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 124 122 6 127 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 45 U A - - MP 129 128 6 133 4 2 2 39 59 -6.683 -6.890 -0.064 -5.304 -3.721 -3.524 -3.608 0.143 -2.658 -4.213 1.657 -3.318 -3.619 0.483 -4.014 -1.436 3.043 -3.887 -0.346 -2.485 ML 130 128 6 133 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - A - - - ML 135 134 6 137 3 1 1 37 56 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 136 134 6 137 3 0 0 36 55 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - A - - - ML 138 137 3 140 3 1 1 36 55 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 139 137 3 140 3 0 0 35 54 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - a - - - ML 141 140 3 143 3 1 1 35 54 -7.720 -0.024 -6.374 0.918 -1.196 0.033 -0.619 D 142 140 3 143 3 0 0 33 53 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - G - - - ML 144 143 3 146 3 1 1 34 53 -8.128 -0.022 -6.446 -1.061 -2.191 1.569 -1.576 D 145 143 3 146 3 0 0 32 52 -5.620 -0.734 -1.403 IL 146 146 3 146 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 44 - A - - MR 147 146 3 149 3 1 1 33 52 -8.128 -0.022 -6.446 1.590 -1.887 -1.568 -1.386 D 148 146 3 149 3 0 0 31 50 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 43 - A - - MR 150 149 3 152 5 1 1 32 51 -6.883 -0.045 -6.698 -6.910 -7.802 1.590 -1.887 -1.568 -1.386 D 151 149 3 152 5 0 0 30 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 27 42 C G - - MP 153 152 3 157 6 2 2 31 50 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.072 -3.929 -3.839 -0.212 -2.672 -4.311 3.370 -3.432 -3.876 0.112 -4.184 -1.872 0.885 -4.170 -0.371 -2.734 ML 154 152 3 157 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 41 A U - - MP 159 158 6 163 4 2 2 29 48 -6.683 -6.890 -0.064 -5.304 -3.422 -2.555 -3.463 3.020 -3.620 -4.657 0.658 -3.525 -3.374 1.482 -3.903 -0.098 0.238 -3.905 -1.286 -2.322 ML 160 158 6 163 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - A - - - ML 165 164 6 167 3 1 1 26 45 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 166 164 6 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - U - - - ML 168 167 3 170 5 1 1 25 44 -6.883 -0.045 -6.698 -6.910 -7.802 -1.050 -1.127 -1.757 1.466 D 169 167 3 170 5 0 0 24 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 170 170 3 170 5 1 1 25 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 31 40 G C - - MP 171 170 3 175 6 2 2 24 43 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 172 170 3 175 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 32 39 A U - - MP 177 176 6 181 6 2 2 22 41 -9.012 -8.951 -0.023 -7.728 -8.008 -8.403 -3.422 -2.555 -3.463 3.020 -3.620 -4.657 0.658 -3.525 -3.374 1.482 -3.903 -0.098 0.238 -3.905 -1.286 -2.322 ML 178 176 6 181 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 33 38 G C - - MP 183 182 6 187 4 2 2 20 39 -6.683 -6.890 -0.064 -5.304 -4.270 -2.872 -4.337 0.504 -4.568 -4.500 -0.046 -4.537 -4.003 3.501 -4.376 -0.559 -0.446 -4.154 -2.060 -3.222 ML 184 182 6 187 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 187 187 5 187 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 189 188 6 191 3 1 1 16 35 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 190 188 6 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - A - - - ML 192 191 3 194 3 1 1 15 33 -7.720 -0.024 -6.374 1.590 -1.887 -1.568 -1.386 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 36 - G - - - ML 195 194 3 197 3 1 1 13 32 -7.720 -0.024 -6.374 -1.061 -2.191 1.569 -1.576 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 37 - C - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -1.170 1.425 -1.967 -0.703 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1827 ACC RF02028 DESC microRNA mir-1827 LENG 66 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 18:49:19 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF02028/CM NSEQ 3 EFFN 2.018555 CKSUM 3736903992 STATS LOCAL MSV -8.1646 0.71915 STATS LOCAL VITERBI -8.9291 0.71915 STATS LOCAL FORWARD -3.4361 0.71915 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22853 1.46029 1.30542 1.58939 1.38629 1.38629 1.38629 1.38629 0.24725 3.82212 1.62367 1.46634 0.26236 0.00000 * 1 2.11293 2.16607 2.60259 0.37047 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.05452 3.62940 3.62940 1.46634 0.26236 0.20045 1.70576 2 2.65000 0.24566 3.22267 2.23203 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 3 0.18494 3.07723 2.81738 2.76469 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 4 2.53160 3.38505 0.18058 2.96024 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 5 3.02790 0.28443 2.78485 1.98482 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 6 0.41530 2.58022 1.69514 2.51919 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 7 1.84911 2.73236 0.35040 2.61526 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 8 3.00619 0.28733 2.77503 1.98118 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 9 0.41783 2.57270 1.69419 2.50782 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 10 3.01807 0.28574 2.78042 1.98318 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 11 0.18494 3.07723 2.81738 2.76469 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 12 2.47996 3.07015 0.19769 3.01155 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 13 3.03284 0.28379 2.78707 1.98564 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 14 3.03377 0.28366 2.78749 1.98579 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 15 2.79504 1.77523 2.52467 0.37200 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 16 2.45936 2.44927 2.97006 0.25250 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 17 3.03341 0.28371 2.78732 1.98573 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 18 0.84138 2.48665 0.94582 2.32960 18 a - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 19 2.48194 3.07233 0.19718 3.01463 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 20 2.30813 0.73013 1.50490 1.62625 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 21 3.03197 0.28390 2.78668 1.98550 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 22 2.79332 1.77518 2.52397 0.37224 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 23 0.18494 3.07723 2.81738 2.76469 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 24 0.18494 3.07723 2.81738 2.76469 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 25 0.68401 2.37608 1.32865 1.98297 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 26 2.53160 3.38505 0.18058 2.96024 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 27 3.02993 0.28417 2.78576 1.98516 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 28 0.41519 2.58054 1.69518 2.51967 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 29 0.18494 3.07723 2.81738 2.76469 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 30 2.45936 2.44927 2.97006 0.25250 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 31 2.48268 3.07313 0.19699 3.01577 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 32 0.41505 2.58096 1.69524 2.52031 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 33 2.48233 3.07274 0.19708 3.01523 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 34 0.18494 3.07723 2.81738 2.76469 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 35 0.18494 3.07723 2.81738 2.76469 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 36 2.53160 3.38505 0.18058 2.96024 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 37 2.65000 0.24566 3.22267 2.23203 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 38 3.21993 0.23264 2.90246 2.18289 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 39 2.74398 1.97031 2.39250 0.34974 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 40 3.20809 0.23392 2.89743 2.18059 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 41 2.75385 1.97123 2.39592 0.34822 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 42 2.26543 2.95947 0.24413 2.79710 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 43 0.18494 3.07723 2.81738 2.76469 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 44 0.18494 3.07723 2.81738 2.76469 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 45 0.42298 2.70444 1.61202 2.54449 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 46 2.26030 2.95292 0.24589 2.78890 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 47 1.87628 2.24281 0.48308 2.08906 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 48 3.21776 0.23287 2.90154 2.18247 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 49 2.54387 1.59323 2.28800 0.48337 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 50 2.25500 2.94617 0.24772 2.78046 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 51 0.42248 2.70625 1.61212 2.54683 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 52 2.26310 2.95649 0.24493 2.79337 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 53 2.26408 2.95774 0.24460 2.79494 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 54 3.23776 0.23075 2.90996 2.18631 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 55 0.18494 3.07723 2.81738 2.76469 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 56 2.26132 2.95422 0.24554 2.79053 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 57 2.74960 1.97083 2.39445 0.34887 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 58 0.73647 1.49035 2.16933 1.70566 58 a - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 59 2.26221 2.95535 0.24524 2.79195 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 60 0.18494 3.07723 2.81738 2.76469 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 61 2.83307 1.77276 2.53582 0.36801 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 62 2.75342 1.97119 2.39577 0.34829 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 63 2.26516 2.95912 0.24423 2.79667 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 64 0.18494 3.07723 2.81738 2.76469 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 65 0.18494 3.07723 2.81738 2.76469 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.04475 3.82212 3.82212 1.46634 0.26236 1.09861 0.40547 66 2.45936 2.44927 2.97006 0.25250 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02262 3.80000 * 1.46634 0.26236 0.00000 * //