# STOCKHOLM 1.0
#=GF ID mir-25
#=GF AC RF02020
#=GF DE mir-25 microRNA precursor family
#=GF AU Boursnell C; 0000-0002-3494-4451
#=GF GA 40.5
#=GF NC 40.1
#=GF TC 40.5
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR MIPF; MIPF0000013;
#=GF DR URL; http://www.mirbase.org;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 20403161
#=GF RT Small RNA expression and strain specificity in the rat
#=GF RA Linsen SE, de Wit E, de Bruijn E, Cuppen E
#=GF RL BMC Genomics. 2010;11:249.
#=GF RN [2]
#=GF RM 17604727
#=GF RT A mammalian microRNA expression atlas based on small RNA library
#=GF RT sequencing
#=GF RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
#=GF RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
#=GF RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
#=GF RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
#=GF RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
#=GF RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
#=GF RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
#=GF RA JJ, Sander C, Zavolan M, Tuschl T
#=GF RL Cell. 2007;129:1401-1414.
#=GF RN [3]
#=GF RM 18392026
#=GF RT Discovering microRNAs from deep sequencing data using miRDeep
#=GF RA Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S,
#=GF RA Rajewsky N
#=GF RL Nat Biotechnol. 2008;26:407-415.
#=GF RN [4]
#=GF RM 15652478
#=GF RT Phylogenetic shadowing and computational identification of human microRNA
#=GF RT genes
#=GF RA Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E
#=GF RL Cell. 2005;120:21-24.
#=GF RN [5]
#=GF RM 16766679
#=GF RT Identification and characterization of two novel classes of small RNAs in
#=GF RT the mouse germline: retrotransposon-derived siRNAs in oocytes and germline
#=GF RT small RNAs in testes
#=GF RA Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N,
#=GF RA Imai H
#=GF RL Genes Dev. 2006;20:1732-1743.
#=GF RN [6]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC Family represents the microRNA (miRNA) precursor mir-412 imported from
#=GF CC miRBase [6].
#=GF WK Mir-25_microRNA_precursor_family
#=GF SQ 3

AADA01162939.1/2400-2483   GGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGG-CUGAGACGCGCCCGCC
URS00000C85B2_9606/1-84    GGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACA-GUGCCGGCC
AABR05031162.1/12939-12856 GGCCAGUGUUGAGAGGCGGAGACACGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACA-GUGCCGGCC
#=GC SS_cons               <<<<-<<<<----<<<<-<<<<<----<<<<<-<<<<<______>>--->>>>>>>>---->>>>>->>>>----.>>>>->>>>
#=GC RF                    GGCcAGuguUGAGaGgCGGaGaCuuGGGCaauUGCuGGACGCUGCCCUGgGCauuGCACUUGuCuCGGcCuGAcA.gcgCCgGCC
//
