INFERNAL1/a [1.1.4 | Dec 2020] NAME SECIS_5 ACC RF01991 DESC Selenocysteine insertion sequence 5 STATES 202 NODES 48 CLEN 66 W 95 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:53:31 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.760742 CKSUM 1443977380 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 61.50 NC 35.30 EFP7GF -8.8163 0.71914 ECMLC 0.61719 -4.78581 3.94477 1600000 262628 0.004569 ECMGC 0.41352 -14.96764 -1.15232 1600000 121100 0.003303 ECMLI 0.61202 -2.95839 5.38493 1600000 198069 0.006058 ECMGI 0.45141 -9.91044 2.00268 1600000 86610 0.004618 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 95 132 -6.877 -7.084 -0.056 -5.498 IL 1 1 2 1 4 1 18 98 134 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 97 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 18 95 132 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 4 2 3 5 3 0 12 94 131 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 16 96 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 70 - a - - MR 6 5 3 8 5 1 18 94 131 -7.036 -0.041 -6.852 -7.064 -7.956 0.778 -0.881 -1.019 0.320 D 7 5 3 8 5 0 10 93 129 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 15 94 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 69 g c - - MP 9 8 3 13 6 2 19 93 130 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -2.588 -1.958 -2.761 1.084 -2.891 -0.371 0.952 -3.068 -2.743 2.509 -3.137 0.831 0.684 -2.749 -0.790 -1.845 ML 10 8 3 13 6 1 12 91 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 11 91 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 6 88 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 93 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 92 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 68 U A - - MP 15 14 6 19 6 2 18 91 128 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 16 14 6 19 6 1 11 90 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 11 89 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 6 86 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 91 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 13 90 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 67 G C - - MP 21 20 6 25 6 2 17 89 126 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 22 20 6 25 6 1 11 88 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 10 87 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 5 84 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 89 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 88 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 66 a u - - MP 27 26 6 31 6 2 15 87 124 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -2.875 0.681 -2.998 2.477 -3.284 -4.005 0.646 -3.251 -2.971 1.750 -3.495 0.034 0.397 -3.240 -1.133 -1.987 ML 28 26 6 31 6 1 10 86 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 9 85 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 82 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 87 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 87 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 65 A U - - MP 33 32 6 37 6 2 14 85 122 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.685 -2.745 -3.712 3.259 -3.998 -5.051 0.295 -3.760 -3.608 1.193 -4.150 -0.239 -0.123 -4.256 -1.646 -2.552 ML 34 32 6 37 6 1 9 84 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 8 83 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 5 81 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 85 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 85 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 64 C G - - MP 39 38 6 43 6 2 12 83 120 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 40 38 6 43 6 1 8 82 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 7 82 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 4 79 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 10 83 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 10 83 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 63 g u - - MP 45 44 6 49 4 2 10 81 118 -6.877 -7.084 -0.056 -5.498 -3.534 -2.335 -3.694 1.183 -4.343 -5.069 0.035 -3.729 -3.379 1.468 -3.896 2.992 -0.325 -4.294 -1.906 -2.412 ML 46 44 6 49 4 1 7 81 117 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 5 80 117 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 4 79 115 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 9 82 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 9 81 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 6 53 3 1 9 79 116 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 52 50 6 53 3 0 3 77 114 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 8 80 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 54 53 3 56 3 1 8 78 115 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 55 53 3 56 3 0 3 76 113 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 7 79 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 57 56 3 59 3 1 7 77 114 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 58 56 3 59 3 0 2 75 112 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 6 78 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 60 59 3 62 3 1 6 76 113 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 61 59 3 62 3 0 1 75 111 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 6 77 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 63 62 3 65 3 1 6 75 112 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 64 62 3 65 3 0 1 74 111 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 4 76 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 62 - A - - MR 66 65 3 68 3 1 5 74 111 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 67 65 3 68 3 0 0 72 109 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 75 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - C - - MR 69 68 3 71 3 1 5 73 110 -8.293 -0.019 -6.611 -1.583 1.579 -2.401 -1.029 D 70 68 3 71 3 0 0 71 108 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 3 74 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 60 - A - - MR 72 71 3 74 3 1 4 72 109 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 73 71 3 74 3 0 0 71 107 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 2 73 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 59 - G - - MR 75 74 3 77 5 1 4 71 108 -7.036 -0.041 -6.852 -7.064 -7.956 -1.440 -2.638 1.689 -2.024 D 76 74 3 77 5 0 0 70 106 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 72 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 58 a u - - MP 78 77 3 82 6 2 5 70 107 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -2.567 -2.276 0.579 2.365 -2.728 -3.619 1.029 -2.939 -2.731 1.462 -3.270 -0.246 0.748 -2.892 -0.694 -1.784 ML 79 77 3 82 6 1 1 69 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 68 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 66 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 70 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 70 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 57 G C - - MP 84 83 6 88 6 2 4 68 105 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.741 -2.559 -3.782 0.944 -4.353 -4.440 0.122 -4.100 -3.704 3.113 -4.128 1.222 -0.166 -3.817 -1.841 -2.679 ML 85 83 6 88 6 1 1 67 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 67 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 65 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 68 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 68 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 56 A U - - MP 90 89 6 94 4 2 2 66 103 -6.877 -7.084 -0.056 -5.498 -3.685 -2.745 -3.712 3.259 -3.998 -5.051 0.295 -3.760 -3.608 1.193 -4.150 -0.239 -0.123 -4.256 -1.646 -2.552 ML 91 89 6 94 4 1 1 66 102 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 65 102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 64 101 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 67 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 66 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - A - - - ML 96 95 6 98 3 1 1 64 101 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 97 95 6 98 3 0 0 63 100 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 65 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - c - - MR 99 98 3 101 5 1 1 63 100 -7.036 -0.041 -6.852 -7.064 -7.956 0.361 0.511 -1.137 -0.258 D 100 98 3 101 5 0 0 62 98 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 64 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 54 u a - - MP 102 101 3 106 6 2 2 62 99 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.423 -3.403 -3.342 0.201 -2.402 -3.937 1.865 -3.084 -3.371 0.434 -3.776 -1.494 2.093 -3.590 2.043 -2.291 ML 103 101 3 106 6 1 1 61 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 60 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 57 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 62 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 62 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 53 U A - - MP 108 107 6 112 6 2 2 60 97 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 109 107 6 112 6 1 1 59 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 58 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 55 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 60 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 60 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 52 g c - - MP 114 113 6 118 6 2 2 58 95 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.400 -2.446 -3.447 2.284 -3.810 -4.375 0.549 -3.688 -3.428 2.620 -3.908 -0.060 0.234 -3.631 -1.399 -2.343 ML 115 113 6 118 6 1 1 57 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 56 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 53 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 58 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 58 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 51 U A - - MP 120 119 6 124 6 2 2 56 93 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 121 119 6 124 6 1 1 55 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 54 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 51 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 56 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 56 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 50 U A - - MP 126 125 6 130 6 2 2 54 91 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 127 125 6 130 6 1 1 53 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 52 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 50 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 54 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 54 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 49 C G - - MP 132 131 6 136 6 2 2 52 89 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 133 131 6 136 6 1 1 51 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 51 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 48 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 52 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 52 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 48 C G - - MP 138 137 6 142 4 2 2 50 87 -6.877 -7.084 -0.056 -5.498 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 139 137 6 142 4 1 1 50 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 49 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 48 84 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 51 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 50 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - u - - - ML 144 143 6 146 3 1 1 48 85 -7.899 -0.022 -6.553 0.292 -0.795 -0.103 0.343 D 145 143 6 146 3 0 0 46 83 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 49 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - A - - - ML 147 146 3 149 3 1 1 47 84 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 148 146 3 149 3 0 0 45 82 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 48 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 150 149 3 152 3 1 1 46 83 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 151 149 3 152 3 0 0 45 81 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 47 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 153 152 3 155 3 1 1 45 82 -8.293 -0.019 -6.611 1.689 -2.240 -1.885 -1.769 D 154 152 3 155 3 0 0 44 81 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 46 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 47 - A - - MR 156 155 3 158 5 1 1 44 81 -7.036 -0.041 -6.852 -7.064 -7.956 1.689 -2.240 -1.885 -1.769 D 157 155 3 158 5 0 0 43 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 45 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 46 U A - - MP 159 158 3 163 6 2 2 43 80 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 160 158 3 163 6 1 1 42 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 41 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 38 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 43 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 43 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 45 C G - - MP 165 164 6 169 6 2 2 41 78 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 166 164 6 169 6 1 1 39 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 39 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 37 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 41 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 41 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 31 44 C G - - MP 171 170 6 175 4 2 2 39 76 -6.877 -2.277 -0.390 -5.498 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 172 170 6 175 4 1 1 37 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 37 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 35 72 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 40 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 41 77 -0.725 -1.421 -5.539 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - U - - - ML 177 176 6 179 3 1 1 21 40 -7.899 -0.022 -6.553 -0.696 0.017 -1.447 1.003 D 178 176 6 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - G - - - ML 180 179 3 182 3 1 1 20 39 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - A - - - ML 183 182 3 185 3 1 1 19 37 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - g - - - ML 186 185 3 188 3 1 1 18 36 -7.899 -0.022 -6.553 0.443 -1.409 0.761 -0.813 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - c - - - ML 189 188 3 191 3 1 1 16 35 -7.899 -0.022 -6.553 -0.688 0.686 -1.474 0.496 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - a - - - ML 192 191 3 194 3 1 1 15 33 -7.899 -0.022 -6.553 0.906 -0.943 -1.044 0.164 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - g - - - ML 195 194 3 197 3 1 1 13 32 -7.899 -0.022 -6.553 0.443 -1.409 0.761 -0.813 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 39 - A - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 1.689 -2.240 -1.885 -1.769 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SECIS_5 ACC RF01991 DESC Selenocysteine insertion sequence 5 LENG 66 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Mar 5 13:53:31 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 2.581055 CKSUM 1443977380 STATS LOCAL MSV -8.2394 0.71914 STATS LOCAL VITERBI -8.8851 0.71914 STATS LOCAL FORWARD -3.3481 0.71914 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.07609 1.64703 1.41260 1.50084 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 0.00000 * 1 0.13720 3.35196 3.06511 3.06752 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 2 1.85522 1.71177 0.64182 1.98996 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 3 3.10254 2.00004 2.86459 0.27085 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 4 2.65945 3.35584 0.15308 3.29488 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 5 0.53585 2.50322 1.44576 2.32852 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 6 0.29827 2.91140 1.93159 2.83729 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 7 3.31048 0.21400 3.09955 2.19746 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 8 1.97104 3.01273 0.28096 2.87399 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 9 0.13720 3.35196 3.06511 3.06752 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 10 0.13720 3.35196 3.06511 3.06752 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 11 2.71613 2.66215 3.23761 0.19260 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 12 2.81531 3.70844 0.13000 3.28345 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 13 0.13720 3.35196 3.06511 3.06752 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 14 0.62029 2.13665 1.56135 2.00760 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 15 2.08895 2.82169 0.29022 2.67978 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 16 0.29823 2.91159 1.93163 2.83755 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 17 0.13720 3.35196 3.06511 3.06752 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 18 2.65819 1.52946 2.44035 0.46818 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 19 3.10006 1.99987 2.86345 0.27111 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 20 0.99760 2.50610 0.78284 2.38006 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 21 3.09914 1.99981 2.86303 0.27121 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 22 3.09820 1.99975 2.86260 0.27131 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 23 3.30979 0.21407 3.09921 2.19734 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 24 3.30872 0.21417 3.09869 2.19715 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 25 1.18063 2.01394 1.43240 1.13719 25 u - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 26 0.13720 3.35196 3.06511 3.06752 26 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 27 0.13720 3.35196 3.06511 3.06752 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 28 0.13720 3.35196 3.06511 3.06752 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 29 3.09966 1.99985 2.86327 0.27116 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 30 3.31409 0.21365 3.10133 2.19810 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 31 3.31361 0.21370 3.10109 2.19802 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 32 2.04960 1.35052 2.58459 0.62235 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 33 2.81531 3.70844 0.13000 3.28345 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 34 0.13720 3.35196 3.06511 3.06752 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 35 1.06660 2.55913 0.77081 2.15578 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 36 2.04491 0.81365 2.61375 1.03815 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 37 0.69666 2.15114 2.23179 1.27990 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 38 1.06660 2.55913 0.77081 2.15578 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 39 0.13720 3.35196 3.06511 3.06752 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.29034 1.46120 3.91042 1.39076 0.28620 1.09861 0.40547 40 2.47856 3.27080 0.18393 3.07558 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 41 2.48016 3.27308 0.18351 3.07827 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 42 0.30645 3.05570 1.83740 2.85377 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 43 0.13720 3.35196 3.06511 3.06752 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 44 2.47510 3.26590 0.18482 3.06979 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 45 2.47566 3.26670 0.18468 3.07072 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 46 0.30764 3.04927 1.83661 2.84615 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 47 0.30746 3.05023 1.83673 2.84730 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 48 2.61554 0.89008 2.31773 0.87287 52 u - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 49 0.30692 3.05318 1.83709 2.85079 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 50 1.17685 2.60725 0.63455 2.43222 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 51 1.12515 0.93637 2.32937 1.68207 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 52 3.06663 2.23939 2.72356 0.24685 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 53 2.91603 0.53015 2.63666 1.25270 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 54 2.23849 1.78377 1.27670 0.80649 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 55 2.81531 3.70844 0.13000 3.28345 59 G - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 56 0.13720 3.35196 3.06511 3.06752 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 57 2.98296 0.17585 3.55906 2.49928 61 C - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 58 0.13720 3.35196 3.06511 3.06752 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 59 3.08094 2.00165 2.80894 0.27614 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 60 2.47592 3.26706 0.18461 3.07116 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 61 3.06328 2.23894 2.72224 0.24722 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 62 2.54989 1.15016 2.30258 0.68256 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 63 3.49873 0.18147 3.19497 2.35647 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 64 0.30680 3.05380 1.83717 2.85152 68 A - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 65 2.22629 0.75605 1.92926 1.28266 69 c - - > 1.38629 1.38629 1.38629 1.38629 0.04089 3.91042 3.91042 1.46634 0.26236 1.09861 0.40547 66 0.79449 2.10084 2.20428 1.15357 70 a - - : 1.38629 1.38629 1.38629 1.38629 0.02065 3.89018 * 1.46634 0.26236 0.00000 * //