INFERNAL1/a [1.1.5 | Sep 2023] NAME SECIS_5 ACC RF01991 DESC Selenocysteine insertion sequence 5 STATES 202 NODES 48 CLEN 66 W 95 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 17:18:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01991/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.754883 CKSUM 1443977380 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 61.40 NC 39.00 EFP7GF -8.8374 0.71913 ECMLC 0.62315 -4.70435 3.95214 1600000 264168 0.004543 ECMGC 0.41966 -14.77465 -1.16869 1600000 120730 0.003313 ECMLI 0.61102 -2.98326 5.37592 1600000 198332 0.006050 ECMGI 0.45148 -9.95519 1.95474 1600000 86558 0.004621 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 95 131 -6.875 -7.082 -0.056 -5.496 IL 1 1 2 1 4 1 18 97 133 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 97 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 18 95 131 -8.291 -0.020 -6.609 1.688 -2.235 -1.881 -1.764 D 4 2 3 5 3 0 12 93 129 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 16 95 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 70 - a - - MR 6 5 3 8 5 1 18 94 130 -7.034 -0.041 -6.850 -7.062 -7.954 0.822 -0.899 -1.024 0.268 D 7 5 3 8 5 0 10 92 128 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 15 94 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 69 g c - - MP 9 8 3 13 6 2 19 93 129 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -2.599 -1.982 -2.767 1.080 -2.896 -0.328 0.947 -3.078 -2.757 2.527 -3.157 0.780 0.680 -2.757 -0.795 -1.853 ML 10 8 3 13 6 1 12 91 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 11 91 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 6 87 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 14 92 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 14 92 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 68 U A - - MP 15 14 6 19 6 2 18 91 127 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.051 -3.871 -3.904 -0.177 -2.877 -4.481 1.448 -3.562 -3.910 0.099 -4.291 -1.775 3.257 -4.207 -0.556 -2.748 ML 16 14 6 19 6 1 11 89 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 11 89 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 6 86 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 13 90 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 13 90 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 67 G C - - MP 21 20 6 25 6 2 17 89 125 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.613 -3.033 -4.701 0.285 -5.051 -4.643 -0.447 -4.933 -4.242 3.606 -4.589 -0.727 -0.836 -4.383 -2.477 -3.579 ML 22 20 6 25 6 1 11 87 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 10 87 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 5 84 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 88 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 88 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 66 a u - - MP 27 26 6 31 6 2 15 87 123 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -2.871 0.726 -2.995 2.460 -3.280 -4.001 0.649 -3.247 -2.967 1.751 -3.490 0.037 0.399 -3.237 -1.130 -1.983 ML 28 26 6 31 6 1 10 85 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 9 85 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 82 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 86 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 86 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 65 A U - - MP 33 32 6 37 6 2 14 85 121 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -3.682 -2.742 -3.708 3.256 -3.992 -5.045 0.301 -3.757 -3.605 1.197 -4.147 -0.236 -0.117 -4.251 -1.641 -2.549 ML 34 32 6 37 6 1 9 83 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 8 83 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 5 80 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 84 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 84 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 64 C G - - MP 39 38 6 43 6 2 12 83 119 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.415 -4.309 -4.127 -0.553 -2.875 -4.556 3.507 -3.672 -4.172 -0.293 -4.447 -2.254 0.652 -4.493 -0.579 -3.017 ML 40 38 6 43 6 1 8 81 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 7 81 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 4 79 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 10 82 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 10 82 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 63 g u - - MP 45 44 6 49 4 2 10 81 117 -6.875 -7.082 -0.056 -5.496 -3.532 -2.334 -3.691 1.184 -4.338 -5.063 0.040 -3.726 -3.377 1.472 -3.893 2.988 -0.320 -4.289 -1.901 -2.410 ML 46 44 6 49 4 1 7 80 116 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 5 79 115 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 4 78 114 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 9 81 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 9 81 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 51 50 6 53 3 1 9 79 115 -7.896 -0.022 -6.550 1.688 -2.235 -1.881 -1.764 D 52 50 6 53 3 0 3 77 113 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 8 80 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 54 53 3 56 3 1 8 78 114 -7.896 -0.022 -6.550 1.688 -2.235 -1.881 -1.764 D 55 53 3 56 3 0 3 76 112 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 7 79 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 57 56 3 59 3 1 7 77 113 -7.896 -0.022 -6.550 -1.361 -1.380 -2.088 1.581 D 58 56 3 59 3 0 2 75 111 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 6 78 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 60 59 3 62 3 1 6 76 112 -7.896 -0.022 -6.550 -1.435 -2.632 1.688 -2.018 D 61 59 3 62 3 0 1 74 110 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 6 77 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 63 62 3 65 3 1 6 75 111 -8.291 -0.020 -6.609 1.688 -2.235 -1.881 -1.764 D 64 62 3 65 3 0 1 73 109 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 4 75 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 62 - A - - MR 66 65 3 68 3 1 5 74 110 -8.291 -0.020 -6.609 1.688 -2.235 -1.881 -1.764 D 67 65 3 68 3 0 0 72 108 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 74 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - C - - MR 69 68 3 71 3 1 5 73 109 -8.291 -0.020 -6.609 -1.577 1.577 -2.395 -1.025 D 70 68 3 71 3 0 0 71 107 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 3 73 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 60 - A - - MR 72 71 3 74 3 1 4 72 108 -8.291 -0.020 -6.609 1.688 -2.235 -1.881 -1.764 D 73 71 3 74 3 0 0 70 106 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 2 72 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 59 - G - - MR 75 74 3 77 5 1 4 71 107 -7.034 -0.041 -6.850 -7.062 -7.954 -1.435 -2.632 1.688 -2.018 D 76 74 3 77 5 0 0 69 105 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 71 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 58 a u - - MP 78 77 3 82 6 2 5 70 106 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -2.582 -2.290 0.468 2.418 -2.744 -3.631 1.014 -2.953 -2.747 1.455 -3.285 -0.262 0.734 -2.905 -0.709 -1.799 ML 79 77 3 82 6 1 1 68 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 68 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 65 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 69 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 69 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 57 G C - - MP 84 83 6 88 6 2 4 68 104 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -3.764 -2.572 -3.804 0.928 -4.374 -4.439 0.109 -4.125 -3.722 3.142 -4.143 1.147 -0.181 -3.825 -1.857 -2.702 ML 85 83 6 88 6 1 1 66 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 66 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 64 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 67 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 67 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 56 A U - - MP 90 89 6 94 4 2 2 66 102 -6.875 -7.082 -0.056 -5.496 -3.682 -2.742 -3.708 3.256 -3.992 -5.045 0.301 -3.757 -3.605 1.197 -4.147 -0.236 -0.117 -4.251 -1.641 -2.549 ML 91 89 6 94 4 1 1 65 101 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 64 100 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 63 99 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 66 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 66 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - A - - - ML 96 95 6 98 3 1 1 64 100 -8.291 -0.020 -6.609 1.688 -2.235 -1.881 -1.764 D 97 95 6 98 3 0 0 62 98 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 64 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - c - - MR 99 98 3 101 5 1 1 63 99 -7.034 -0.041 -6.850 -7.062 -7.954 0.308 0.562 -1.155 -0.258 D 100 98 3 101 5 0 0 61 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 63 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 54 u g - - MP 102 101 3 106 6 2 2 62 98 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -3.436 -3.416 -3.350 0.188 -2.402 -3.939 1.865 -3.087 -3.380 0.422 -3.782 -1.507 2.053 -3.601 2.093 -2.299 ML 103 101 3 106 6 1 1 60 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 60 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 57 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 61 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 61 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 53 U A - - MP 108 107 6 112 6 2 2 60 96 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.051 -3.871 -3.904 -0.177 -2.877 -4.481 1.448 -3.562 -3.910 0.099 -4.291 -1.775 3.257 -4.207 -0.556 -2.748 ML 109 107 6 112 6 1 1 58 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 58 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 55 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 59 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 59 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 52 g c - - MP 114 113 6 118 6 2 2 58 94 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -3.387 -2.441 -3.436 2.328 -3.794 -4.382 0.558 -3.671 -3.413 2.577 -3.898 -0.052 0.242 -3.633 -1.389 -2.331 ML 115 113 6 118 6 1 1 56 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 56 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 53 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 57 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 57 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 51 U A - - MP 120 119 6 124 6 2 2 56 92 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.051 -3.871 -3.904 -0.177 -2.877 -4.481 1.448 -3.562 -3.910 0.099 -4.291 -1.775 3.257 -4.207 -0.556 -2.748 ML 121 119 6 124 6 1 1 54 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 54 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 51 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 55 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 55 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 50 U A - - MP 126 125 6 130 6 2 2 54 90 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.051 -3.871 -3.904 -0.177 -2.877 -4.481 1.448 -3.562 -3.910 0.099 -4.291 -1.775 3.257 -4.207 -0.556 -2.748 ML 127 125 6 130 6 1 1 52 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 52 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 49 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 53 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 53 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 49 C G - - MP 132 131 6 136 6 2 2 52 88 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.415 -4.309 -4.127 -0.553 -2.875 -4.556 3.507 -3.672 -4.172 -0.293 -4.447 -2.254 0.652 -4.493 -0.579 -3.017 ML 133 131 6 136 6 1 1 50 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 50 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 48 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 51 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 51 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 48 C G - - MP 138 137 6 142 4 2 2 50 86 -6.875 -7.082 -0.056 -5.496 -4.415 -4.309 -4.127 -0.553 -2.875 -4.556 3.507 -3.672 -4.172 -0.293 -4.447 -2.254 0.652 -4.493 -0.579 -3.017 ML 139 137 6 142 4 1 1 49 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 48 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 47 83 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 50 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 50 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - a - - - ML 144 143 6 146 3 1 1 48 84 -7.896 -0.022 -6.550 0.312 -0.803 -0.073 0.304 D 145 143 6 146 3 0 0 46 82 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 49 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - A - - - ML 147 146 3 149 3 1 1 47 83 -7.896 -0.022 -6.550 1.688 -2.235 -1.881 -1.764 D 148 146 3 149 3 0 0 45 81 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 48 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 150 149 3 152 3 1 1 46 82 -7.896 -0.022 -6.550 1.688 -2.235 -1.881 -1.764 D 151 149 3 152 3 0 0 44 80 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 47 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 153 152 3 155 3 1 1 45 81 -8.291 -0.020 -6.609 1.688 -2.235 -1.881 -1.764 D 154 152 3 155 3 0 0 43 79 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 45 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 47 - A - - MR 156 155 3 158 5 1 1 44 80 -7.034 -0.041 -6.850 -7.062 -7.954 1.688 -2.235 -1.881 -1.764 D 157 155 3 158 5 0 0 42 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 44 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 46 U A - - MP 159 158 3 163 6 2 2 43 79 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.051 -3.871 -3.904 -0.177 -2.877 -4.481 1.448 -3.562 -3.910 0.099 -4.291 -1.775 3.257 -4.207 -0.556 -2.748 ML 160 158 3 163 6 1 1 41 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 41 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 38 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 42 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 42 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 45 C G - - MP 165 164 6 169 6 2 2 41 77 -9.080 -9.019 -0.022 -7.796 -8.075 -8.471 -4.415 -4.309 -4.127 -0.553 -2.875 -4.556 3.507 -3.672 -4.172 -0.293 -4.447 -2.254 0.652 -4.493 -0.579 -3.017 ML 166 164 6 169 6 1 1 39 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 39 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 36 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 40 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 40 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 31 44 C G - - MP 171 170 6 175 4 2 2 39 75 -6.875 -2.365 -0.367 -5.496 -4.415 -4.309 -4.127 -0.553 -2.875 -4.556 3.507 -3.672 -4.172 -0.293 -4.447 -2.254 0.652 -4.493 -0.579 -3.017 ML 172 170 6 175 4 1 1 37 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 36 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 35 71 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 39 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 40 76 -0.739 -1.401 -5.481 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - u - - - ML 177 176 6 179 3 1 1 21 40 -7.896 -0.022 -6.550 -0.688 0.046 -1.440 0.985 D 178 176 6 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - G - - - ML 180 179 3 182 3 1 1 20 39 -7.896 -0.022 -6.550 -1.435 -2.632 1.688 -2.018 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - A - - - ML 183 182 3 185 3 1 1 19 37 -7.896 -0.022 -6.550 1.688 -2.235 -1.881 -1.764 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - g - - - ML 186 185 3 188 3 1 1 18 36 -7.896 -0.022 -6.550 0.389 -1.428 0.813 -0.831 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - c - - - ML 189 188 3 191 3 1 1 16 35 -7.896 -0.022 -6.550 -0.699 0.732 -1.487 0.451 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - a - - - ML 192 191 3 194 3 1 1 15 33 -7.896 -0.022 -6.550 0.882 -0.929 -1.036 0.194 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - g - - - ML 195 194 3 197 3 1 1 13 32 -7.896 -0.022 -6.550 0.389 -1.428 0.813 -0.831 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 39 - A - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 1.688 -2.235 -1.881 -1.764 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SECIS_5 ACC RF01991 DESC Selenocysteine insertion sequence 5 LENG 66 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 17:18:54 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01991/CM NSEQ 3 EFFN 2.575195 CKSUM 1443977380 STATS LOCAL MSV -8.2333 0.71913 STATS LOCAL VITERBI -8.9013 0.71913 STATS LOCAL FORWARD -3.3465 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.07752 1.64381 1.41096 1.50324 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 0.00000 * 1 0.13759 3.34929 3.06270 3.06457 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 2 1.86125 1.70455 0.64096 1.99596 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 3 3.09938 1.99766 2.86111 0.27172 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 4 2.65772 3.35316 0.15345 3.29221 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 5 0.53605 2.50284 1.44550 2.32828 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 6 0.29925 2.90805 1.92918 2.83408 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 7 3.30772 0.21460 3.09646 2.19530 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 8 1.96979 3.01005 0.28155 2.87153 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 9 0.13759 3.34929 3.06270 3.06457 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 10 0.13759 3.34929 3.06270 3.06457 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 11 2.71360 2.66004 3.23499 0.19310 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 12 2.81261 3.70539 0.13039 3.28042 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 13 0.13759 3.34929 3.06270 3.06457 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 14 0.61625 2.14249 1.56553 2.01218 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 15 2.10219 2.83179 0.28622 2.69110 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 16 0.29920 2.90823 1.92922 2.83434 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 17 0.13759 3.34929 3.06270 3.06457 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 18 2.67255 1.53151 2.45491 0.46387 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 19 3.09690 1.99749 2.85997 0.27199 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 20 0.96369 2.50370 0.81201 2.37764 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 21 3.09600 1.99743 2.85956 0.27208 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 22 3.09506 1.99737 2.85913 0.27218 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 23 3.30702 0.21466 3.09612 2.19518 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 24 3.30597 0.21477 3.09560 2.19499 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 25 1.16526 2.02016 1.40935 1.16725 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 26 0.13759 3.34929 3.06270 3.06457 26 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 27 0.13759 3.34929 3.06270 3.06457 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 28 0.13759 3.34929 3.06270 3.06457 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 29 3.09648 1.99746 2.85978 0.27203 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 30 3.31129 0.21425 3.09822 2.19594 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 31 3.31083 0.21429 3.09799 2.19585 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 32 2.04245 1.32649 2.57856 0.63677 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 33 2.81261 3.70539 0.13039 3.28042 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 34 0.13759 3.34929 3.06270 3.06457 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 35 1.11154 2.57567 0.73199 2.17245 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 36 2.05677 0.77872 2.62795 1.07612 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 37 0.71469 2.13983 2.22459 1.25573 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 38 1.11154 2.57567 0.73199 2.17245 38 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 39 0.13759 3.34929 3.06270 3.06457 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.27321 1.51862 3.90925 1.39104 0.28611 1.09861 0.40547 40 2.47636 3.26770 0.18445 3.07276 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 41 2.47796 3.26997 0.18403 3.07544 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 42 0.30744 3.05215 1.83502 2.85063 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 43 0.13759 3.34929 3.06270 3.06457 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 44 2.47292 3.26282 0.18534 3.06699 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 45 2.47348 3.26361 0.18520 3.06792 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 46 0.30863 3.04575 1.83423 2.84305 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 47 0.30845 3.04671 1.83435 2.84419 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 48 2.61238 0.92356 2.31511 0.84215 52 u - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 49 0.30791 3.04964 1.83471 2.84766 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 50 1.20905 2.62158 0.61211 2.44615 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 51 1.16984 0.89580 2.34733 1.68375 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 52 3.06344 2.23666 2.72023 0.24769 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 53 2.92736 0.50870 2.64740 1.29336 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 54 2.24306 1.78602 1.32039 0.77825 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 55 2.81261 3.70539 0.13039 3.28042 59 G - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 56 0.13759 3.34929 3.06270 3.06457 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 57 2.97972 0.17641 3.55584 2.49666 61 C - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 58 0.13759 3.34929 3.06270 3.06457 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 59 3.07856 1.99944 2.80632 0.27689 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 60 2.47374 3.26398 0.18513 3.06836 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 61 3.06011 2.23621 2.71892 0.24807 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 62 2.54957 1.13498 2.30221 0.69231 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 63 3.49619 0.18189 3.19222 2.35478 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 64 0.30779 3.05026 1.83479 2.84839 68 A - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 65 2.23276 0.73907 1.93728 1.30522 69 c - - > 1.38629 1.38629 1.38629 1.38629 0.04094 3.90925 3.90925 1.46634 0.26236 1.09861 0.40547 66 0.76053 2.11555 2.21101 1.19593 70 a - - : 1.38629 1.38629 1.38629 1.38629 0.02068 3.88899 * 1.46634 0.26236 0.00000 * //