INFERNAL1/a [1.1.5 | Sep 2023] NAME SECIS_2 ACC RF01988 DESC Selenocysteine insertion sequence 2 STATES 169 NODES 37 CLEN 55 W 71 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 21:11:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01988/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.191406 CKSUM 1568378243 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 73.30 NC 69.30 EFP7GF -9.9859 0.71940 ECMLC 0.62593 -5.51292 3.89651 1600000 433516 0.002768 ECMGC 0.43047 -15.93700 -2.32460 1600000 140244 0.002852 ECMLI 0.62731 -3.96811 5.10359 1600000 355330 0.003377 ECMGI 0.45460 -11.65967 0.40091 1600000 96202 0.004158 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 71 91 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 IL 1 1 2 1 6 1 12 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 13 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 55 G C - - MP 3 2 3 7 6 2 16 71 91 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.934 -3.186 -5.054 0.070 -5.503 -4.768 -0.820 -5.308 -4.451 3.681 -4.775 -0.893 -1.200 -4.593 -2.868 -3.927 ML 4 2 3 7 6 1 10 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 9 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 5 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 12 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 12 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 54 c g - - MP 9 8 6 13 6 2 15 69 89 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -3.875 -3.877 -3.690 -0.182 -2.546 -4.190 2.760 -3.296 -3.720 0.013 -4.070 -1.943 1.027 -3.988 2.047 -2.598 ML 10 8 6 13 6 1 9 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 8 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 11 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 11 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 53 G C - - MP 15 14 6 19 6 2 13 67 87 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.934 -3.186 -5.054 0.070 -5.503 -4.768 -0.820 -5.308 -4.451 3.681 -4.775 -0.893 -1.200 -4.593 -2.868 -3.927 ML 16 14 6 19 6 1 9 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 7 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 4 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 10 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 10 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 52 U G - - MP 21 20 6 25 6 2 11 65 85 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.293 -4.221 -3.949 -0.537 -2.645 -4.340 1.646 -3.437 -3.991 -0.378 -4.262 -2.216 0.769 -4.359 3.124 -2.852 ML 22 20 6 25 6 1 8 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 9 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 9 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 51 C G - - MP 27 26 6 31 4 2 9 63 83 -7.051 -7.258 -0.049 -5.673 -4.763 -4.687 -4.416 -0.901 -3.089 -4.800 3.612 -3.920 -4.473 -0.689 -4.711 -2.638 0.403 -4.818 -0.801 -3.306 ML 28 26 6 31 4 1 7 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 4 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 3 62 82 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 8 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 33 32 6 35 3 1 8 61 80 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 34 32 6 35 3 0 3 59 79 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 7 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 36 35 3 38 3 1 7 60 79 -8.445 -0.018 -6.763 -1.786 -3.037 1.766 -2.424 D 37 35 3 38 3 0 2 58 78 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 6 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 50 - u - - MR 39 38 3 41 3 1 6 59 78 -8.445 -0.018 -6.763 -0.785 0.513 -1.574 0.729 D 40 38 3 41 3 0 1 57 77 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 49 - A - - MR 42 41 3 44 3 1 6 58 77 -8.445 -0.018 -6.763 1.758 -2.567 -2.179 -2.129 D 43 41 3 44 3 0 0 56 76 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 4 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 48 - A - - MR 45 44 3 47 5 1 5 57 76 -7.178 -0.037 -6.993 -7.205 -8.097 1.165 -1.530 -0.143 -0.983 D 46 44 3 47 5 0 0 55 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 3 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 47 A U - - MP 48 47 3 52 6 2 5 56 75 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -3.969 -2.956 -3.973 3.435 -4.401 -5.481 -0.089 -4.003 -3.858 0.887 -4.415 -0.404 -0.506 -4.639 -2.029 -2.797 ML 49 47 3 52 6 1 2 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 2 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 2 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 46 C G - - MP 54 53 6 58 4 2 3 54 73 -7.051 -7.258 -0.049 -5.673 -4.763 -4.687 -4.416 -0.901 -3.089 -4.800 3.612 -3.920 -4.473 -0.689 -4.711 -2.638 0.403 -4.818 -0.801 -3.306 ML 55 53 6 58 4 1 1 54 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 54 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 52 72 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 2 55 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - A - - - ML 60 59 6 62 5 1 3 51 71 -7.178 -0.037 -6.993 -7.205 -8.097 1.758 -2.567 -2.179 -2.129 D 61 59 6 62 5 0 0 50 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 62 62 3 62 5 1 1 52 71 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 45 C G - - MP 63 62 3 67 6 2 4 50 70 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.763 -4.687 -4.416 -0.901 -3.089 -4.800 3.612 -3.920 -4.473 -0.689 -4.711 -2.638 0.403 -4.818 -0.801 -3.306 ML 64 62 3 67 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 44 G C - - MP 69 68 6 73 6 2 4 48 68 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.934 -3.186 -5.054 0.070 -5.503 -4.768 -0.820 -5.308 -4.451 3.681 -4.775 -0.893 -1.200 -4.593 -2.868 -3.927 ML 70 68 6 73 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 43 G U - - MP 75 74 6 79 6 2 3 46 66 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -3.741 -2.473 -3.918 1.053 -4.737 -5.465 -0.319 -3.925 -3.549 1.187 -4.077 3.204 -0.674 -4.643 -2.261 -2.594 ML 76 74 6 79 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 42 C G - - MP 81 80 6 85 6 2 3 44 64 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -3.348 -3.302 -3.368 0.069 -2.666 -4.014 3.109 -3.276 -3.391 0.263 0.331 -1.504 0.855 -3.580 -0.483 -2.397 ML 82 80 6 85 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 41 C G - - MP 87 86 6 91 4 2 2 42 62 -7.051 -7.258 -0.049 -5.673 -4.763 -4.687 -4.416 -0.901 -3.089 -4.800 3.612 -3.920 -4.473 -0.689 -4.711 -2.638 0.403 -4.818 -0.801 -3.306 ML 88 86 6 91 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 44 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - C - - - ML 93 92 6 95 3 1 1 40 59 -8.445 -0.018 -6.763 -1.978 1.682 -2.807 -1.343 D 94 92 6 95 3 0 0 39 58 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 40 - C - - MR 96 95 3 98 5 1 1 39 58 -7.178 -0.037 -6.993 -7.205 -8.097 -1.978 1.682 -2.807 -1.343 D 97 95 3 98 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 39 a u - - MP 99 98 3 103 6 2 2 38 57 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -3.029 -2.514 -3.130 2.773 -3.242 -4.162 0.708 -3.323 -3.126 1.305 -3.665 -0.284 0.397 -3.408 -1.102 0.581 ML 100 98 3 103 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 38 u a - - MP 105 104 6 109 4 2 2 36 55 -7.051 -7.258 -0.049 -5.673 -2.575 -2.632 -2.687 0.703 -2.260 -3.475 1.725 -2.763 -2.722 0.850 -3.244 -0.918 2.151 -2.850 0.818 0.269 ML 106 104 6 109 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - C - - - ML 111 110 6 113 3 1 1 33 52 -8.445 -0.018 -6.763 -1.978 1.682 -2.807 -1.343 D 112 110 6 113 3 0 0 32 51 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 37 - a - - MR 114 113 3 116 5 1 1 32 51 -7.178 -0.037 -6.993 -7.205 -8.097 0.614 -0.329 -0.189 -0.329 D 115 113 3 116 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 36 G C - - MP 117 116 3 121 6 2 2 31 50 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.934 -3.186 -5.054 0.070 -5.503 -4.768 -0.820 -5.308 -4.451 3.681 -4.775 -0.893 -1.200 -4.593 -2.868 -3.927 ML 118 116 3 121 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 35 G C - - MP 123 122 6 127 6 2 2 29 48 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -3.639 -2.700 -3.713 0.669 -3.951 -4.194 0.227 -4.033 -3.648 3.240 0.032 -0.505 -0.085 -3.655 -1.651 -2.727 ML 124 122 6 127 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 34 u a - - MP 129 128 6 133 4 2 2 27 46 -7.051 -7.258 -0.049 -5.673 -3.591 -3.568 -3.515 0.084 -2.560 -4.124 1.739 -3.243 -3.533 0.295 -3.947 -1.625 2.755 -3.761 1.205 -2.437 ML 130 128 6 133 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - U - - - ML 135 134 6 137 5 1 1 25 43 -7.178 -0.037 -6.993 -7.205 -8.097 -1.666 -1.631 -2.408 1.666 D 136 134 6 137 5 0 0 23 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 137 137 3 137 5 1 1 25 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 33 G C - - MP 138 137 3 142 6 2 2 24 42 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.934 -3.186 -5.054 0.070 -5.503 -4.768 -0.820 -5.308 -4.451 3.681 -4.775 -0.893 -1.200 -4.593 -2.868 -3.927 ML 139 137 3 142 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 32 C G - - MP 144 143 6 148 6 2 2 22 40 -9.148 -9.087 -0.021 -7.864 -8.143 -8.538 -4.763 -4.687 -4.416 -0.901 -3.089 -4.800 3.612 -3.920 -4.473 -0.689 -4.711 -2.638 0.403 -4.818 -0.801 -3.306 ML 145 143 6 148 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 31 a u - - MP 150 149 6 154 4 2 2 19 38 -7.051 -7.258 -0.049 -5.673 -3.009 -2.652 -3.102 2.862 -3.079 -4.086 0.822 0.329 -3.122 1.018 -3.660 -0.530 0.475 -3.375 -0.979 -2.152 ML 151 149 6 154 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - G - - - ML 156 155 6 158 3 1 1 16 35 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 157 155 6 158 3 0 0 16 34 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - G - - - ML 159 158 3 161 3 1 1 15 33 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 160 158 3 161 3 0 0 15 33 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - U - - - ML 162 161 3 164 3 1 1 13 31 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 163 161 3 164 3 0 0 13 32 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - C - - - ML 165 164 3 167 2 1 1 1 1 * 0.000 -1.978 1.682 -2.807 -1.343 D 166 164 3 167 2 0 0 0 0 * 0.000 IL 167 167 3 167 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 168 167 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SECIS_2 ACC RF01988 DESC Selenocysteine insertion sequence 2 LENG 55 MAXL 134 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 21:11:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01988/CM NSEQ 4 EFFN 3.167969 CKSUM 1568378243 STATS LOCAL MSV -8.2673 0.71940 STATS LOCAL VITERBI -8.2304 0.71940 STATS LOCAL FORWARD -3.6761 0.71940 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.86522 1.19953 1.10329 1.55106 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 0.00000 * 1 2.84532 3.63202 0.11923 3.58220 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 2 2.99820 0.76337 2.79049 0.86124 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 3 2.82951 3.61041 0.12187 3.55256 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 4 3.26348 1.76200 3.09301 0.29480 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 5 3.58061 0.16411 3.39540 2.40829 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 6 2.95426 2.86101 3.48330 0.15086 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 7 3.06200 3.98431 0.09869 3.55512 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 8 0.22007 3.23230 2.16339 3.14332 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 9 3.57765 0.16433 3.39385 2.40774 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 10 0.10523 3.60068 3.29091 3.34217 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 11 3.58458 0.16382 3.39747 2.40903 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 12 2.82348 3.60222 0.12289 3.54137 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 13 2.09412 3.25740 0.23176 3.09682 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 14 2.73435 0.53563 1.63120 1.87037 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 15 3.57212 0.16474 3.39095 2.40671 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 16 3.28176 0.13142 3.85051 2.74387 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 17 0.63581 2.49499 1.73301 1.55475 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 18 2.16018 1.53918 1.99394 0.62740 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 19 3.28176 0.13142 3.85051 2.74387 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 20 2.82324 3.60189 0.12293 3.54093 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 21 2.36757 2.89099 0.23657 2.78968 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 22 2.74453 1.62471 2.52919 0.41699 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 23 2.95426 2.86101 3.48330 0.15086 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 24 2.82505 3.60436 0.12262 3.54428 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 25 3.57949 0.16420 3.39481 2.40808 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 26 0.60214 1.59384 1.89600 2.31215 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 27 3.06200 3.98431 0.09869 3.55512 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 28 3.06200 3.98431 0.09869 3.55512 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 29 2.95426 2.86101 3.48330 0.15086 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 30 3.28176 0.13142 3.85051 2.74387 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 31 2.53874 2.15579 2.20092 0.36453 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 32 2.68451 3.55374 0.14219 3.33331 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 33 3.70111 0.14878 3.43306 2.51011 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 34 0.70185 2.69664 1.03294 2.51400 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 35 3.02205 0.38621 1.91321 2.08696 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 36 3.74854 0.14580 3.45551 2.51891 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 37 0.92942 1.59987 1.50288 1.71033 37 a - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 38 1.10333 2.16287 1.10368 1.50691 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 39 2.60538 1.99480 2.30409 0.37072 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 40 3.28176 0.13142 3.85051 2.74387 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 41 2.68587 3.55581 0.14192 3.33566 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 42 2.13270 2.70250 0.31061 2.50786 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 43 3.29356 2.20305 3.04555 0.21711 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 44 3.71147 0.14812 3.43801 2.51206 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 45 2.68271 3.55099 0.14256 3.33017 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 46 2.69269 3.56626 0.14056 3.34756 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 47 3.38104 2.50236 3.04708 0.17841 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 48 0.50869 2.67427 1.46602 2.31346 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 49 0.10523 3.60068 3.29091 3.34217 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 50 2.12399 0.95358 2.69269 0.85006 50 u - - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 51 2.69054 3.56296 0.14099 3.34380 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 52 2.34330 3.27706 0.20294 2.99731 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 53 3.74873 0.14579 3.45560 2.51895 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 54 2.14100 2.95174 0.26586 2.75413 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03584 4.03962 4.03962 1.46634 0.26236 1.09861 0.40547 55 3.79401 0.14308 3.47652 2.52704 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.01808 4.02186 * 1.46634 0.26236 0.00000 * //