INFERNAL1/a [1.1.5 | Sep 2023] NAME ZEB2_AS1_2 ACC RF01985 DESC ZEB2 antisense RNA 1 conserved region 2 STATES 187 NODES 63 CLEN 61 W 139 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 14:17:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01985/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 3.574463 CKSUM 3272946933 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 70.00 NC 51.40 EFP7GF -10.0886 0.71891 ECMLC 0.70952 -8.89369 0.14672 1600000 732680 0.001638 ECMGC 0.42971 -18.03503 -4.82159 1600000 116936 0.003421 ECMLI 0.63666 -8.03997 1.26944 1600000 450019 0.002667 ECMGI 0.49303 -10.52665 0.12993 1600000 76535 0.005226 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 139 222 -7.501 -7.708 -0.036 -6.122 IL 1 1 2 1 4 1 20 141 224 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 141 223 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 19 140 222 -5.852 -0.051 -5.852 -2.497 1.758 -2.726 -1.790 D 4 2 3 5 3 0 14 136 219 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 21 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 18 138 220 -5.852 -0.051 -5.852 -1.452 0.093 -1.640 1.168 D 7 5 3 8 3 0 14 135 217 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 20 145 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 18 137 219 -5.852 -0.051 -5.852 -1.991 1.530 -2.222 -0.629 D 10 8 3 11 3 0 13 134 216 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 19 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 17 136 218 -5.852 -0.051 -5.852 1.275 -1.671 -0.203 -1.330 D 13 11 3 14 3 0 12 133 214 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 19 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 16 134 216 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 16 14 3 17 3 0 11 131 213 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 18 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 16 133 215 -5.852 -0.051 -5.852 -0.784 -1.335 -1.628 1.433 D 19 17 3 20 3 0 11 130 211 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 17 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 15 132 213 -5.852 -0.051 -5.852 1.358 -0.661 -1.510 -1.140 D 22 20 3 23 3 0 10 129 210 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 16 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 14 130 212 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 25 23 3 26 3 0 9 127 208 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 16 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 13 129 210 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 28 26 3 29 3 0 9 126 207 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 15 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 13 128 209 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 31 29 3 32 3 0 8 125 206 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 14 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 12 127 207 -5.852 -0.051 -5.852 -2.497 1.758 -2.726 -1.790 D 34 32 3 35 3 0 7 123 204 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 14 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 11 125 206 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 37 35 3 38 3 0 7 122 203 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 13 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 11 124 205 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 40 38 3 41 3 0 6 121 201 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 12 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 10 123 203 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 43 41 3 44 3 0 5 119 200 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 12 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 10 121 202 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 46 44 3 47 3 0 5 118 198 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 11 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 9 120 200 -5.852 -0.051 -5.852 -1.695 1.444 -0.855 -1.259 D 49 47 3 50 3 0 4 117 197 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 10 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 8 119 199 -5.852 -0.051 -5.852 -1.951 1.502 -2.178 -0.541 D 52 50 3 53 3 0 3 115 195 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 10 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 8 117 197 -5.852 -0.051 -5.852 -1.507 -0.154 -1.698 1.287 D 55 53 3 56 3 0 3 114 194 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 9 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 7 116 196 -5.852 -0.051 -5.852 1.492 -1.922 -0.751 -1.603 D 58 56 3 59 3 0 2 113 192 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 9 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 6 114 194 -5.852 -0.051 -5.852 -0.340 -2.086 1.420 -1.741 D 61 59 3 62 3 0 1 111 191 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 8 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 6 113 193 -5.852 -0.051 -5.852 -0.671 -1.002 1.291 -1.233 D 64 62 3 65 3 0 1 110 189 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 7 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 5 112 191 -5.852 -0.051 -5.852 -1.951 1.502 -2.178 -0.541 D 67 65 3 68 3 0 0 109 188 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 7 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 5 110 190 -5.852 -0.051 -5.852 -0.784 -1.335 -1.628 1.433 D 70 68 3 71 3 0 0 107 186 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 6 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 4 109 188 -5.852 -0.051 -5.852 -0.808 -2.351 1.578 -2.021 D 73 71 3 74 3 0 0 106 184 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 6 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 75 74 3 77 3 1 4 108 186 -5.852 -0.051 -5.852 -0.911 -2.407 1.606 -2.082 D 76 74 3 77 3 0 0 104 183 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 5 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - G - - - ML 78 77 3 80 3 1 3 106 185 -5.852 -0.051 -5.852 -0.874 -2.387 1.596 -2.060 D 79 77 3 80 3 0 0 103 181 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 81 80 3 83 3 1 3 105 183 -5.852 -0.051 -5.852 -0.495 -0.990 -0.538 1.069 D 82 80 3 83 3 0 0 102 180 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 4 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 84 83 3 86 3 1 2 104 182 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 85 83 3 86 3 0 0 100 178 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 4 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 87 86 3 89 3 1 2 102 180 -5.852 -0.051 -5.852 -2.163 -3.088 1.814 -2.812 D 88 86 3 89 3 0 0 99 177 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 3 109 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 90 89 3 92 3 1 2 101 179 -5.852 -0.051 -5.852 -1.997 1.533 -2.227 -0.640 D 91 89 3 92 3 0 0 97 175 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 93 92 3 95 3 1 1 99 177 -5.852 -0.051 -5.852 1.470 -1.889 -0.685 -1.567 D 94 92 3 95 3 0 0 96 173 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 2 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 1 98 175 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 97 95 3 98 3 0 0 95 172 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 99 98 3 101 3 1 1 96 174 -5.852 -0.051 -5.852 1.514 -1.958 -0.820 -1.643 D 100 98 3 101 3 0 0 93 170 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 1 95 172 -5.852 -0.051 -5.852 1.283 -1.677 -0.220 -1.337 D 103 101 3 104 3 0 0 92 169 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 105 104 3 107 3 1 1 94 171 -5.852 -0.051 -5.852 -2.163 -3.088 1.814 -2.812 D 106 104 3 107 3 0 0 90 167 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - g - - - ML 108 107 3 110 3 1 1 92 169 -5.852 -0.051 -5.852 -0.072 -1.320 0.999 -0.621 D 109 107 3 110 3 0 0 89 165 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - C - - - ML 111 110 3 113 3 1 1 91 167 -5.852 -0.051 -5.852 -2.497 1.758 -2.726 -1.790 D 112 110 3 113 3 0 0 87 163 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - A - - - ML 114 113 3 116 3 1 1 89 166 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 115 113 3 116 3 0 0 86 162 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - C - - - ML 117 116 3 119 3 1 1 88 164 -5.852 -0.051 -5.852 -2.497 1.758 -2.726 -1.790 D 118 116 3 119 3 0 0 84 160 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - C - - - ML 120 119 3 122 3 1 1 86 162 -5.852 -0.051 -5.852 -2.497 1.758 -2.726 -1.790 D 121 119 3 122 3 0 0 83 158 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 123 122 3 125 3 1 1 85 160 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 124 122 3 125 3 0 0 81 157 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - U - - - ML 126 125 3 128 3 1 1 83 159 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 127 125 3 128 3 0 0 80 155 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 129 128 3 131 3 1 1 82 157 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 130 128 3 131 3 0 0 78 153 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - G - - - ML 132 131 3 134 3 1 1 80 155 -5.852 -0.051 -5.852 -0.409 -2.126 1.447 -1.783 D 133 131 3 134 3 0 0 77 151 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 135 134 3 137 3 1 1 79 153 -5.852 -0.051 -5.852 -2.163 -3.088 1.814 -2.812 D 136 134 3 137 3 0 0 75 149 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - U - - - ML 138 137 3 140 3 1 1 77 152 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 139 137 3 140 3 0 0 73 147 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 141 140 3 143 3 1 1 75 150 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 142 140 3 143 3 0 0 72 146 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - A - - - ML 144 143 3 146 3 1 1 74 148 -5.852 -0.051 -5.852 1.827 -2.906 -2.624 -2.684 D 145 143 3 146 3 0 0 70 144 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - C - - - ML 147 146 3 149 3 1 1 72 146 -5.852 -0.051 -5.852 -2.497 1.758 -2.726 -1.790 D 148 146 3 149 3 0 0 68 142 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - C - - - ML 150 149 3 152 3 1 1 71 144 -5.852 -0.051 -5.852 -2.497 1.758 -2.726 -1.790 D 151 149 3 152 3 0 0 67 140 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 79 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 69 142 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 154 152 3 155 3 0 0 65 138 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 67 140 -5.852 -0.135 -3.796 -2.163 -3.088 1.814 -2.812 D 157 155 3 158 3 0 0 64 136 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - A - - - ML 159 158 3 161 3 1 1 65 138 -5.770 -0.054 -5.770 1.398 -1.719 -0.558 -1.392 D 160 158 3 161 3 0 0 62 134 -12.589 -0.567 -1.623 IL 161 161 3 161 3 1 1 75 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 162 161 3 164 3 1 1 63 135 -5.852 -0.051 -5.852 1.034 -1.553 0.235 -1.201 D 163 161 3 164 3 0 0 59 131 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - U - - - ML 165 164 3 167 3 1 1 61 133 -5.852 -0.051 -5.852 -2.230 -1.805 -2.411 1.728 D 166 164 3 167 3 0 0 57 128 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 71 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - G - - - ML 168 167 3 170 3 1 1 59 131 -5.852 -0.051 -5.852 -2.163 -3.088 1.814 -2.812 D 169 167 3 170 3 0 0 54 125 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - G - - - ML 171 170 3 173 3 1 1 57 128 -5.852 -0.133 -3.816 -0.360 -0.932 1.151 -1.074 D 172 170 3 173 3 0 0 52 122 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 174 173 3 176 3 1 1 55 125 -5.772 -0.054 -5.772 1.389 -1.709 -0.533 -1.382 D 175 173 3 176 3 0 0 46 116 -12.575 -2.609 -0.259 IL 176 176 3 176 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - C - - - ML 177 176 3 179 3 1 1 52 122 -5.772 -0.054 -5.772 -2.333 1.728 -2.554 -1.649 D 178 176 3 179 3 0 0 42 111 -12.575 -2.609 -0.259 IL 179 179 3 179 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - A - - - ML 180 179 3 182 3 1 1 48 117 -5.772 -0.054 -5.772 1.799 -2.697 -2.426 -2.468 D 181 179 3 182 3 0 0 29 98 -12.575 -2.609 -0.259 IL 182 182 3 182 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - G - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -2.041 -2.918 1.793 -2.640 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ZEB2_AS1_2 ACC RF01985 DESC ZEB2 antisense RNA 1 conserved region 2 LENG 61 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 14:17:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01985/CM NSEQ 11 EFFN 3.574463 CKSUM 3272946933 STATS LOCAL MSV -8.4089 0.71891 STATS LOCAL VITERBI -8.5504 0.71891 STATS LOCAL FORWARD -3.5567 0.71891 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26799 1.47839 1.45341 1.35935 1.38629 1.38629 1.38629 1.38629 0.02051 5.19930 4.21412 0.39730 1.11515 0.00000 * 1 3.11722 0.16765 3.27603 2.62699 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 2 2.39258 1.32161 2.52328 0.57678 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 3 2.76667 0.32595 2.92631 1.82206 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 4 0.50265 2.54438 1.52728 2.30831 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 5 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 6 1.92984 2.31138 2.51476 0.39331 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 7 0.44525 1.84449 2.43307 2.17626 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 8 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 9 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 10 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 11 3.11722 0.16765 3.27603 2.62699 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 12 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 13 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 14 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 15 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 16 2.56101 0.38559 1.97867 2.25887 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 17 2.73860 0.34488 2.89604 1.76146 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 18 2.43077 1.49279 2.56326 0.49392 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 19 0.35214 2.71863 1.90667 2.49764 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 20 1.62189 2.83241 0.40223 2.59321 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 21 1.85121 2.08078 0.49140 2.24099 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 22 2.73860 0.34488 2.89604 1.76146 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 23 1.92984 2.31138 2.51476 0.39331 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 24 1.94664 3.01564 0.29218 2.78708 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 25 2.01807 3.05483 0.27326 2.82916 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 26 1.99222 3.04068 0.27993 2.81395 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 27 1.72951 2.07258 1.75896 0.64523 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 28 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 29 2.88563 3.52671 0.12877 3.33525 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 30 2.77031 0.32358 2.93022 1.82995 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 31 0.36724 2.69540 1.86140 2.47236 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 32 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 33 0.33694 2.74358 1.95447 2.52484 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 34 0.49712 2.54883 1.53900 2.31314 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 35 2.88563 3.52671 0.12877 3.33525 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 36 1.43631 2.30159 0.69395 1.81707 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 37 3.11722 0.16765 3.27603 2.62699 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 38 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 39 3.11722 0.16765 3.27603 2.62699 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 40 3.11722 0.16765 3.27603 2.62699 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 41 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 42 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 43 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 44 1.66964 2.85992 0.38308 2.62201 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 45 2.88563 3.52671 0.12877 3.33525 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 46 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 47 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 48 0.11968 3.40080 3.20508 3.24702 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 49 3.11722 0.16765 3.27603 2.62699 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 50 3.11722 0.16765 3.27603 2.62699 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 51 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 52 2.88563 3.52671 0.12877 3.33525 - G - - : 1.38629 1.38629 1.38629 1.38629 0.09358 4.05603 2.63088 1.46634 0.26236 1.09861 0.40547 53 0.41698 2.57769 1.77323 2.35142 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03733 3.99978 3.99978 1.46634 0.26236 0.39268 1.12469 54 0.66980 2.46260 1.22345 2.21861 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 55 2.93206 2.63740 3.05777 0.18853 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 56 2.88563 3.52671 0.12877 3.33525 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03525 4.05603 4.05603 1.46634 0.26236 1.09861 0.40547 57 1.63553 2.03213 0.58819 2.13060 - G - - : 1.38629 1.38629 1.38629 1.38629 0.09246 4.05603 2.64507 1.46634 0.26236 1.09861 0.40547 58 0.42333 2.57094 1.75608 2.34391 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03729 4.00085 4.00085 1.46634 0.26236 1.80827 0.17905 59 3.00321 0.18862 3.15648 2.52952 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03729 4.00085 4.00085 1.46634 0.26236 1.80827 0.17905 60 0.13953 3.25594 3.06803 3.09712 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03729 4.00085 4.00085 1.46634 0.26236 1.80827 0.17905 61 2.80135 3.40872 0.14379 3.21592 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //