INFERNAL1/a [1.1.4 | Dec 2020] NAME HOTAIRM1_3 ACC RF01977 DESC HOX antisense intergenic RNA myeloid 1 conserved region 3 STATES 181 NODES 61 CLEN 59 W 135 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:57:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 3.945068 CKSUM 980493524 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 43.90 NC 32.90 EFP7GF -10.5904 0.71895 ECMLC 0.78272 -8.24111 0.12790 1600000 839580 0.001429 ECMGC 0.39373 -19.15917 -4.87035 1600000 111018 0.003603 ECMLI 0.65371 -8.46280 0.98593 1600000 577703 0.002077 ECMGI 0.43135 -12.30675 -0.15217 1600000 75686 0.005285 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 135 217 -7.601 -7.808 -0.034 -6.222 IL 1 1 2 1 4 1 20 138 219 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 137 219 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 19 136 217 -5.941 -0.048 -5.941 -2.299 -3.276 1.835 -3.001 D 4 2 3 5 3 0 16 133 214 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 21 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 134 216 -5.941 -0.048 -5.941 -2.299 -3.276 1.835 -3.001 D 7 5 3 8 3 0 15 131 213 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 20 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 18 133 214 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 10 8 3 11 3 0 15 130 211 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 19 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 17 132 213 -5.941 -0.048 -5.941 -2.680 1.787 -2.917 -1.947 D 13 11 3 14 3 0 14 129 210 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 18 139 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 16 130 212 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 16 14 3 17 3 0 14 128 209 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 17 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 15 129 210 -5.941 -0.570 -1.689 -1.470 -1.144 1.531 -1.749 D 19 17 3 20 3 0 13 127 208 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 17 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 15 128 209 -5.439 -0.068 -5.439 -1.003 -0.123 -1.164 1.095 D 22 20 3 23 3 0 13 127 207 -14.362 -0.144 -3.397 IL 23 23 3 23 3 1 16 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 14 127 208 -5.941 -0.048 -5.941 -1.546 -1.454 -0.885 1.460 D 25 23 3 26 3 0 9 124 204 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 16 134 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 14 126 206 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 28 26 3 29 3 0 9 122 203 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 15 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 13 124 205 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 31 29 3 32 3 0 8 121 201 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 14 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 12 123 203 -5.941 -0.048 -5.941 -1.504 -2.143 1.569 -1.138 D 34 32 3 35 3 0 7 120 200 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 14 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 12 122 202 -5.941 -0.048 -5.941 -2.680 1.787 -2.917 -1.947 D 37 35 3 38 3 0 7 118 198 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 13 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 11 120 200 -5.941 -0.048 -5.941 -2.680 1.787 -2.917 -1.947 D 40 38 3 41 3 0 6 117 197 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 12 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 10 119 199 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 43 41 3 44 3 0 6 116 195 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 12 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 10 118 197 -5.941 -0.048 -5.941 -2.299 -3.276 1.835 -3.001 D 46 44 3 47 3 0 5 114 194 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 11 125 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - g - - - ML 48 47 3 50 3 1 9 116 196 -5.941 -0.048 -5.941 0.649 -1.700 0.790 -1.343 D 49 47 3 50 3 0 5 113 192 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 11 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 8 115 194 -5.941 -0.048 -5.941 1.523 -2.060 -0.770 -1.741 D 52 50 3 53 3 0 4 112 191 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 10 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 8 114 193 -5.941 -0.048 -5.941 -2.119 1.546 -2.356 -0.614 D 55 53 3 56 3 0 3 110 189 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 9 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 7 112 191 -5.941 -0.048 -5.941 -2.144 1.562 -2.384 -0.669 D 58 56 3 59 3 0 3 109 188 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 9 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 6 111 190 -5.941 -0.048 -5.941 -2.135 1.557 -2.374 -0.649 D 61 59 3 62 3 0 2 108 186 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 8 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 6 110 188 -5.941 -0.048 -5.941 1.854 -3.143 -2.843 -2.930 D 64 62 3 65 3 0 2 106 185 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 7 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 5 108 187 -5.941 -0.140 -3.716 -2.419 -1.961 -2.606 1.762 D 67 65 3 68 3 0 1 105 183 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 7 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 5 107 185 -5.852 -0.051 -5.852 -2.499 1.758 -2.728 -1.791 D 70 68 3 71 3 0 1 103 181 -12.705 -2.739 -0.234 IL 71 71 3 71 3 1 7 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - a - - - ML 72 71 3 74 3 1 5 106 184 -5.852 -0.051 -5.852 0.802 -0.245 -0.411 -0.597 D 73 71 3 74 3 0 0 102 180 -12.705 -2.739 -0.234 IL 74 74 3 74 3 1 6 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 75 74 3 77 3 1 4 104 182 -5.852 -0.051 -5.852 1.425 -1.827 -0.559 -1.500 D 76 74 3 77 3 0 0 102 180 -12.705 -0.514 -1.739 IL 77 77 3 77 3 1 5 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 4 103 181 -5.941 -0.048 -5.941 -2.680 1.787 -2.917 -1.947 D 79 77 3 80 3 0 0 100 177 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 3 101 179 -5.941 -0.048 -5.941 1.854 -3.143 -2.843 -2.930 D 82 80 3 83 3 0 0 98 176 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 4 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 3 100 178 -5.941 -0.048 -5.941 -1.487 -1.226 1.549 -1.791 D 85 83 3 86 3 0 0 97 174 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 4 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 3 1 2 99 176 -5.941 -0.048 -5.941 -2.680 1.787 -2.917 -1.947 D 88 86 3 89 3 0 0 95 172 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 4 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 2 97 174 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 91 89 3 92 3 0 0 94 171 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - G - - - ML 93 92 3 95 3 1 2 96 173 -5.941 -0.048 -5.941 -2.299 -3.276 1.835 -3.001 D 94 92 3 95 3 0 0 92 169 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 3 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 96 95 3 98 3 1 1 94 171 -5.941 -0.048 -5.941 -0.945 -2.551 1.631 -2.226 D 97 95 3 98 3 0 0 91 168 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 2 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - G - - - ML 99 98 3 101 3 1 1 93 170 -5.941 -0.048 -5.941 -2.299 -3.276 1.835 -3.001 D 100 98 3 101 3 0 0 90 166 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 1 92 168 -5.941 -0.048 -5.941 1.854 -3.143 -2.843 -2.930 D 103 101 3 104 3 0 0 88 164 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 2 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - G - - - ML 105 104 3 107 3 1 1 90 166 -5.941 -0.048 -5.941 -1.466 -2.067 1.535 -0.998 D 106 104 3 107 3 0 0 87 163 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 2 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 1 89 165 -5.941 -0.048 -5.941 1.854 -3.143 -2.843 -2.930 D 109 107 3 110 3 0 0 85 161 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - u - - - ML 111 110 3 113 3 1 1 87 163 -5.941 -0.048 -5.941 -1.542 0.634 -1.734 0.851 D 112 110 3 113 3 0 0 84 159 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 114 113 3 116 3 1 1 86 161 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 115 113 3 116 3 0 0 82 158 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 117 116 3 119 3 1 1 84 160 -5.941 -0.048 -5.941 1.513 -2.042 -0.736 -1.722 D 118 116 3 119 3 0 0 81 156 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - A - - - ML 120 119 3 122 3 1 1 83 158 -5.941 -0.048 -5.941 1.854 -3.143 -2.843 -2.930 D 121 119 3 122 3 0 0 79 154 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 123 122 3 125 3 1 1 81 156 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 124 122 3 125 3 0 0 78 152 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - C - - - ML 126 125 3 128 3 1 1 80 154 -5.941 -0.048 -5.941 -1.836 1.483 -0.883 -1.387 D 127 125 3 128 3 0 0 76 150 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 129 128 3 131 3 1 1 78 153 -5.941 -0.048 -5.941 1.257 -1.752 -0.094 -1.409 D 130 128 3 131 3 0 0 75 149 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - A - - - ML 132 131 3 134 3 1 1 77 151 -5.941 -0.048 -5.941 1.547 -2.103 -0.850 -1.788 D 133 131 3 134 3 0 0 73 147 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - C - - - ML 135 134 3 137 3 1 1 75 149 -5.941 -0.048 -5.941 -2.680 1.787 -2.917 -1.947 D 136 134 3 137 3 0 0 71 145 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 84 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - C - - - ML 138 137 3 140 3 1 1 73 147 -5.941 -0.135 -3.771 -2.680 1.787 -2.917 -1.947 D 139 137 3 140 3 0 0 70 143 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - A - - - ML 141 140 3 143 3 1 1 72 145 -5.857 -0.051 -5.857 1.348 -1.408 -1.473 -0.480 D 142 140 3 143 3 0 0 68 141 -12.667 -2.701 -0.241 IL 143 143 3 143 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - C - - - ML 144 143 3 146 3 1 1 70 143 -5.857 -0.051 -5.857 -2.508 1.760 -2.737 -1.799 D 145 143 3 146 3 0 0 68 140 -12.667 -0.531 -1.701 IL 146 146 3 146 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - a - - - ML 147 146 3 149 3 1 1 68 141 -5.941 -0.048 -5.941 0.829 -1.042 -0.085 -0.330 D 148 146 3 149 3 0 0 65 137 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - C - - - ML 150 149 3 152 3 1 1 67 139 -5.941 -0.048 -5.941 -1.263 1.147 -0.711 -0.398 D 151 149 3 152 3 0 0 63 135 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 65 137 -5.941 -0.048 -5.941 -1.494 -1.424 -0.787 1.429 D 154 152 3 155 3 0 0 61 133 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 1 63 135 -5.941 -0.140 -3.716 -2.299 -3.276 1.835 -3.001 D 157 155 3 158 3 0 0 59 131 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - A - - - ML 159 158 3 161 3 1 1 61 133 -5.852 -0.051 -5.852 1.425 -1.827 -0.559 -1.500 D 160 158 3 161 3 0 0 58 129 -12.705 -0.514 -1.739 IL 161 161 3 161 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 162 161 3 164 3 1 1 59 130 -5.941 -0.048 -5.941 1.854 -3.143 -2.843 -2.930 D 163 161 3 164 3 0 0 54 125 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - A - - - ML 165 164 3 167 3 1 1 57 128 -5.941 -0.048 -5.941 1.854 -3.143 -2.843 -2.930 D 166 164 3 167 3 0 0 52 122 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 168 167 3 170 3 1 1 54 125 -5.941 -0.048 -5.941 1.438 -0.791 -1.697 -1.309 D 169 167 3 170 3 0 0 48 118 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - - - ML 171 170 3 173 3 1 1 52 121 -5.941 -0.048 -5.941 -2.419 -1.961 -2.606 1.762 D 172 170 3 173 3 0 0 44 113 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - G - - - ML 174 173 3 176 3 1 1 48 117 -5.941 -0.048 -5.941 -0.915 -2.535 1.623 -2.209 D 175 173 3 176 3 0 0 32 101 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - u - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -0.403 -0.208 -0.552 0.762 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME HOTAIRM1_3 ACC RF01977 DESC HOX antisense intergenic RNA myeloid 1 conserved region 3 LENG 59 MAXL 135 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Mar 5 13:57:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 11 EFFN 3.945068 STATS LOCAL MSV -7.4864 0.71895 STATS LOCAL VITERBI -8.3382 0.71895 STATS LOCAL FORWARD -3.8828 0.71895 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33169 1.39412 1.43409 1.38795 1.38629 1.38629 1.38629 1.38629 0.01913 5.26858 4.28341 0.39730 1.11515 0.00000 * 1 2.97955 3.65688 0.11412 3.46672 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 2 2.97955 3.65688 0.11412 3.46672 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 3 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 4 3.24367 0.14730 3.40812 2.73588 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 5 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 6 2.40530 2.17931 0.32534 2.59887 - G - - : 1.38629 1.38629 1.38629 1.38629 0.39525 4.11824 1.17049 1.46634 0.26236 1.09861 0.40547 7 2.08160 1.47147 2.19333 0.62710 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04719 3.77018 3.77018 1.46634 0.26236 0.09977 2.35436 8 2.45784 2.39436 1.99963 0.37431 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 9 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 10 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 11 2.42892 2.87189 0.29884 2.17511 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 12 3.24367 0.14730 3.40812 2.73588 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 13 3.24367 0.14730 3.40812 2.73588 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 14 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 15 2.97955 3.65688 0.11412 3.46672 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 16 0.93631 2.56472 0.83837 2.31696 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 17 0.33032 2.81427 1.92010 2.59339 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 18 2.85509 0.31437 3.01953 1.81168 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 19 2.87271 0.30332 3.03862 1.85029 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 20 2.86622 0.30734 3.03160 1.83604 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 21 0.10087 3.56489 3.35710 3.41688 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 22 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.09691 4.11823 2.57580 1.46634 0.26236 1.09861 0.40547 23 3.11829 0.16747 3.27715 2.62791 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03523 4.05655 4.05655 1.46634 0.26236 1.89851 0.16227 24 0.83049 1.55646 1.67113 1.80030 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03523 4.05655 4.05655 1.46634 0.26236 1.89851 0.16227 25 0.39837 2.65255 1.77373 2.42570 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03523 4.05655 4.05655 1.46634 0.26236 0.35608 1.20537 26 3.24367 0.14730 3.40812 2.73588 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 27 0.10087 3.56489 3.35710 3.41688 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 28 2.41713 2.23634 0.31234 2.62772 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 29 3.24367 0.14730 3.40812 2.73588 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 30 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 31 2.97955 3.65688 0.11412 3.46672 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 32 2.04154 3.15482 0.25606 2.92936 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 33 2.97955 3.65688 0.11412 3.46672 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 34 0.10087 3.56489 3.35710 3.41688 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 35 2.40213 2.81882 0.32211 2.07803 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 36 0.10087 3.56489 3.35710 3.41688 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 37 2.45489 0.94686 2.58805 0.79628 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 38 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 39 0.33770 2.80178 1.89641 2.57985 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 40 0.10087 3.56489 3.35710 3.41688 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 41 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 42 2.65909 0.35843 1.99808 2.34737 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 43 0.51529 2.60100 1.45114 2.36268 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 44 0.31376 2.84381 1.97547 2.62547 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 45 3.24367 0.14730 3.40812 2.73588 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 46 3.24367 0.14730 3.40812 2.73588 - C - - : 1.38629 1.38629 1.38629 1.38629 0.09378 4.11824 2.61394 1.46634 0.26236 1.09861 0.40547 47 0.45172 2.36226 2.40762 1.71908 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03512 4.05958 4.05958 1.46634 0.26236 1.87195 0.16703 48 3.12449 0.16640 3.28365 2.63323 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03512 4.05958 4.05958 1.46634 0.26236 0.36766 1.17880 49 0.81164 2.10881 1.44555 1.61510 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 50 2.26208 0.59155 1.87928 1.66231 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 51 2.42194 2.37349 1.93151 0.39576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 52 2.97955 3.65688 0.11412 3.46672 - G - - : 1.38629 1.38629 1.38629 1.38629 0.09691 4.11823 2.57580 1.46634 0.26236 1.09861 0.40547 53 0.39837 2.65255 1.77373 2.42570 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03523 4.05655 4.05655 1.46634 0.26236 0.35608 1.20537 54 0.10087 3.56489 3.35710 3.41688 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 55 0.10087 3.56489 3.35710 3.41688 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 56 0.38924 1.93488 2.56285 2.29362 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 57 3.06292 2.74558 3.19235 0.16492 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 58 2.02041 3.14350 0.26113 2.91720 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03309 4.11824 4.11824 1.46634 0.26236 1.09861 0.40547 59 1.66597 1.53067 1.76888 0.85784 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //