# STOCKHOLM 1.0
#=GF ID HOTAIRM1_2
#=GF AC RF01976
#=GF DE HOX antisense intergenic RNA myeloid 1 conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 37.0
#=GF NC 36.8
#=GF TC 37.1
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.21 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 19144990
#=GF RT A myelopoiesis-associated regulatory intergenic noncoding RNA transcript
#=GF RT within the human HOXA cluster.
#=GF RA Zhang X, Lian Z, Padden C, Gerstein MB, Rozowsky J, Snyder M, Gingeras TR,
#=GF RA Kapranov P, Weissman SM, Newburger PE
#=GF RL Blood. 2009;113:2526-2534.
#=GF WK HOTAIRM1
#=GF SQ 7

AC004079.1/81295-81509     GCAUCCGCGGCUCAGCCAAGCUGUUGUUUUAAAAGAGCAAUAAAAAUGAAUUAUGACU-AAACGCCUUCUAACUUAAUGCUUUCGGACGGGGAUCCCCGG------CAAAUAACGUAAGAGGAUUUUU---AUUUGUGCAUGUGUUCCUGCAAUUGAUCU----CUUUGAUGACAUUCUCAUUCAUAGAAAGCGUUUGAU
ABRO01036369.1/2807-3020   GCAUUCGCUGCUCAGCCAAGCUGUUGUUUUUAAAGAGCAAUAAAAAUGAAUUAUGACU-AAAUGCCUUCUAACUUAAUGCCUUCGGACGGGGAUCCCCAG------CAAAUA-CGUAAGAGGAUUUUU---AUUUGUGCAUGUGUUCCUGCAAUUGAUCU----CUUUGAUGACAUUCUCAUUCAUAGAAAGCAGUUGAU
AAPN01063686.1/769-988     GCAUCCGCAGCUCAGCCAAGCUGUUAUUUUAAAAGAGCAAUAAAAAUGAAUUAUGACU-AAACGCCUCCUAACUUAAUGCUUUCGGACGGGGUUCCCCAGCCCAGGCAAAUA-CGUAAGAGGAUUUUU---AUUUGUGCAUGUGUUCCUGCAAUUGAUCU----CUUUGAUGACAUUCUCAUUCAUAGAAAGAGUUUGAU
AC163712.3/121395-121614   GCGGCCGCAGCUCAGCCAAGCUGUUGUUUUAAAGGAGCAAUAAAAAUGAAUUAUGACU-AAACGCCUUCUCACUUAAUGGUUUUAGACGGGGAUCCCCAGCCCCGGCAAAUA-CGUAAGAGGAUUUUU---AUUUGUGCAUGUGUUCCUGCAAUUGAUCU----CUUUGAUGACAUUCUCAUUCAUAGAAAGCGUUUGAU
AAFR03047697.1/31523-31302 GCAUCGGCAGCUUAUCCAAGCUGUUGUUUUAAAAGAGCAAUAAAAAUGACUUAUAGCUUAAACGCCUCCUAACUUAAUGCUUUCCGACGGGGAUCCCCAGCUCGGGCAAAUA-CGUAAGAGGACUUGU---AUUUGUGCAUGUGUUCCUGCGAUUGAUCU----CUUUGAUGACAUUCUCAUUCAUAGAAAGAGUUUGAU
AC145789.3/24347-24573     CCAGCCGCUGGAAAGCCAAGCUGUUGUUUUAAUAGAGCAAUAAAAAUGAAUUAUAGUUUAAACGCCUUCGAGCUUAGAGCUUCUGGAUGGA-AUCCCCAGUCCAGACUAAUA-CGUAAGAGGUUUUUUUUUAUUUGUGUGUGAGCUCCUGCAAUUGAUCUUCCCCCUCGAUGACAUCCUCGUUCAUAGAACGUAUUUGAU
AAWZ02022933.1/14144-13925 GCACCUGAAGCCUAGCCAAGCUGUUGUUUUAACAGCGCAAUAAAAAUGAAUUAUGACU-AACCGCCUCCUCGCUUAAUGGUUUUAGACGGGGAUCCCCAGGCCGAGCAAAUA-CGUAAGGAGAUUUUU---AUUUGUGCAUGUGUUCCUGCCAUUGAUUU----CUUCGAUGACAUUCUCAUUCACAGAAAGCGGGUGAU
#=GC SS_cons               ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::...:::::::::::::::::::::::::::::....::::::::::::::::::::::::::::::::::::
#=GC RF                    gCauCcGcaGcucAGCCAAGCUGUUGUUUUaAaaGaGCAAUAAAAAUGAaUUAUgacU.AAaCGCCUuCuaaCUUAauGcuUuugGAcGGGGaUCCCCaGccCgggCaAAUA.CGUAAGaGGauUUuU...AUUUGUGcaUGuGuUCCUGCaAUUGAUcU....CuUuGAUGACAUuCUCaUUCAuAGAAaGcguuUGAU

AC004079.1/81295-81509     UUAUGAGCG-UAGGACGAAUCGCAUCCAGG
ABRO01036369.1/2807-3020   UUAUGAGCU-UAGGACGAAUCGUAUCCAGG
AAPN01063686.1/769-988     UUAUGAGUG-UAGGAAGAAUCGCAUCUAGC
AC163712.3/121395-121614   UUAUGACUU-UAGGAAGAAUUGCGUUCAGC
AAFR03047697.1/31523-31302 UUAUGAGCACUAGGAAGAAUCUUAUCCAGC
AC145789.3/24347-24573     UUAUGAGAU-UAGGAAGAAUUGCAUCCAGC
AAWZ02022933.1/14144-13925 UUAUGGGUU-UAGGAAGAAUUGCAUCCAAC
#=GC SS_cons               :::::::::.::::::::::::::::::::
#=GC RF                    UUAUGaGuu.UAGGAaGAAUuGcaUcCAGc
//
