INFERNAL1/a [1.1.4 | Dec 2020] NAME H19_2 ACC RF01973 DESC H19 conserved region 2 STATES 211 NODES 71 CLEN 69 W 151 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:57:44 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 23 EFFN 2.922729 CKSUM 2393426131 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.00 NC 34.60 EFP7GF -8.1397 0.71876 ECMLC 0.72243 -9.35564 -0.82803 1600000 568438 0.002111 ECMGC 0.37319 -20.61371 -6.16323 1600000 87926 0.004549 ECMLI 0.65995 -7.79566 0.63771 1600000 313529 0.003827 ECMGI 0.45191 -11.06230 0.04776 1600000 60609 0.006600 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 235 -7.306 -7.513 -0.041 -5.928 IL 1 1 2 1 4 2 27 153 237 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 27 153 237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 2 26 151 236 -5.679 -0.057 -5.679 -0.472 1.121 -1.296 -0.521 D 4 2 3 5 3 0 23 149 232 -11.551 -1.585 -0.585 IL 5 5 3 5 3 3 28 158 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 2 25 150 234 -5.679 -0.057 -5.679 0.972 -0.949 -0.598 -0.219 D 7 5 3 8 3 0 22 147 231 -11.551 -1.585 -0.585 IL 8 8 3 8 3 2 27 157 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 24 149 233 -5.679 -0.169 -3.459 -0.607 -1.130 1.284 -1.150 D 10 8 3 11 3 0 22 146 230 -11.551 -1.585 -0.585 IL 11 11 3 11 3 2 26 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 24 148 231 -5.572 -0.109 -4.280 -1.916 1.631 -2.114 -1.296 D 13 11 3 14 3 0 21 146 229 -12.701 -0.516 -1.735 IL 14 14 3 14 3 2 25 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 23 146 230 -5.637 -0.059 -5.637 -0.316 -0.660 -1.009 1.047 D 16 14 3 17 3 0 20 143 227 -12.120 -2.154 -0.368 IL 17 17 3 17 3 2 25 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 22 145 228 -5.637 -0.059 -5.637 -2.052 1.666 -2.258 -1.411 D 19 17 3 20 3 0 19 143 226 -12.120 -0.862 -1.154 IL 20 20 3 20 3 1 24 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 21 144 227 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 22 20 3 23 3 0 18 141 224 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 23 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 20 142 226 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 25 23 3 26 3 0 17 140 223 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 22 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 19 141 224 -1.797 -0.847 -2.680 -1.810 1.527 -2.028 -0.768 D 28 26 3 29 3 0 17 139 222 -11.551 -1.585 -0.585 IL 29 29 3 29 3 2 20 141 224 -6.130 -0.021 -13.774 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - u - - - ML 30 29 3 32 3 1 19 140 223 -5.467 -0.067 -5.467 -0.656 -0.508 -0.220 0.851 D 31 29 3 32 3 0 16 138 221 -13.287 -0.322 -2.321 IL 32 32 3 32 3 1 20 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - u - - - ML 33 32 3 35 3 1 18 139 221 -5.679 -0.057 -5.679 -0.934 0.030 -0.865 0.931 D 34 32 3 35 3 0 14 136 218 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 19 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - G - - - ML 36 35 3 38 3 1 17 137 220 -5.679 -0.057 -5.679 -0.465 -1.915 1.419 -1.574 D 37 35 3 38 3 0 14 134 217 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 18 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - U - - - ML 39 38 3 41 3 1 16 136 219 -5.679 -0.057 -5.679 -1.041 -1.239 -1.593 1.464 D 40 38 3 41 3 0 13 133 215 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 18 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - C - - - ML 42 41 3 44 3 1 15 135 217 -5.679 -0.119 -4.061 -2.139 1.687 -2.349 -1.484 D 43 41 3 44 3 0 13 132 214 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 17 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 45 44 3 47 3 1 14 133 216 -5.619 -0.413 -2.130 -1.691 1.486 -1.900 -0.685 D 46 44 3 47 3 0 12 131 213 -12.308 -2.342 -0.317 IL 47 47 3 47 3 1 17 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - g - - - ML 48 47 3 50 3 1 14 132 214 -5.283 -0.076 -5.283 0.162 -1.099 0.863 -0.747 D 49 47 3 50 3 0 12 131 212 -13.901 -0.202 -2.935 IL 50 50 3 50 3 1 16 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - A - - - ML 51 50 3 53 3 1 13 131 213 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 52 50 3 53 3 0 9 128 209 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 15 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - C - - - ML 54 53 3 56 3 1 13 130 211 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 55 53 3 56 3 0 8 126 208 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 14 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - C - - - ML 57 56 3 59 3 1 12 128 210 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 58 56 3 59 3 0 7 125 206 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 14 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 60 59 3 62 3 1 11 127 208 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 61 59 3 62 3 0 7 124 205 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 13 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - G - - - ML 63 62 3 65 3 1 11 126 207 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 64 62 3 65 3 0 6 122 203 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 12 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - C - - - ML 66 65 3 68 3 1 10 124 205 -5.679 -0.057 -5.679 -1.689 1.443 -1.900 -0.508 D 67 65 3 68 3 0 5 121 202 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 12 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - C - - - ML 69 68 3 71 3 1 9 123 204 -5.679 -0.057 -5.679 -1.370 1.087 -1.560 0.200 D 70 68 3 71 3 0 5 120 200 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 11 130 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - - - ML 72 71 3 74 3 1 9 121 202 -5.679 -0.057 -5.679 -1.117 -2.280 1.622 -1.968 D 73 71 3 74 3 0 4 118 199 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 10 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - C - - - ML 75 74 3 77 3 1 8 120 201 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 76 74 3 77 3 0 3 117 197 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 10 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 78 77 3 80 3 1 7 119 199 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 79 77 3 80 3 0 3 115 196 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 9 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - A - - - ML 81 80 3 83 3 1 7 117 198 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 82 80 3 83 3 0 2 114 194 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 8 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 6 116 196 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 85 83 3 86 3 0 2 113 193 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 8 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - G - - - ML 87 86 3 89 3 1 6 115 195 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 88 86 3 89 3 0 1 111 191 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 7 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - U - - - ML 90 89 3 92 3 1 5 113 193 -5.679 -0.057 -5.679 -0.114 -0.994 -1.113 1.078 D 91 89 3 92 3 0 1 110 189 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - C - - - ML 93 92 3 95 3 1 4 112 191 -5.679 -0.057 -5.679 -1.689 1.443 -1.900 -0.508 D 94 92 3 95 3 0 0 109 188 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 6 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - C - - - ML 96 95 3 98 3 1 3 110 190 -5.679 -0.101 -4.387 -2.139 1.687 -2.349 -1.484 D 97 95 3 98 3 0 0 108 187 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 5 117 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - U - - - ML 99 98 3 101 3 1 3 109 188 -5.637 -0.059 -5.637 -1.794 -1.445 -1.959 1.626 D 100 98 3 101 3 0 0 106 185 -12.120 -0.862 -1.154 IL 101 101 3 101 3 1 5 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - G - - - ML 102 101 3 104 3 1 3 108 187 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 103 101 3 104 3 0 0 104 183 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 4 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - u - - - ML 105 104 3 107 3 1 2 106 185 -5.679 -0.057 -5.679 0.373 -0.932 -0.976 0.742 D 106 104 3 107 3 0 0 103 182 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 4 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 108 107 3 110 3 1 2 105 183 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 109 107 3 110 3 0 0 102 180 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 3 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 111 110 3 113 3 1 2 103 182 -3.736 -0.143 -5.679 1.759 -2.456 -2.193 -2.219 D 112 110 3 113 3 0 0 100 179 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 3 103 182 -3.957 -0.097 -11.601 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - C - - - ML 114 113 3 116 3 1 1 102 181 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 115 113 3 116 3 0 0 99 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 117 116 3 119 3 1 1 101 179 -5.679 -0.057 -5.679 -1.162 1.507 -1.893 -1.179 D 118 116 3 119 3 0 0 98 175 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - A - - - ML 120 119 3 122 3 1 1 99 178 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 121 119 3 122 3 0 0 96 174 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - - - ML 123 122 3 125 3 1 1 98 176 -5.679 -0.057 -5.679 1.473 -1.747 -0.844 -1.436 D 124 122 3 125 3 0 0 95 172 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 126 125 3 128 3 1 1 97 174 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 127 125 3 128 3 0 0 93 170 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - A - - - ML 129 128 3 131 3 1 1 95 173 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 130 128 3 131 3 0 0 92 169 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - g - - - ML 132 131 3 134 3 1 1 94 171 -5.679 -0.057 -5.679 -0.305 -0.689 0.567 0.122 D 133 131 3 134 3 0 0 90 167 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - - - ML 135 134 3 137 3 1 1 92 169 -5.679 -0.057 -5.679 -0.835 -1.178 -1.477 1.400 D 136 134 3 137 3 0 0 89 165 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - G - - - ML 138 137 3 140 3 1 1 91 167 -5.679 -0.057 -5.679 -0.534 -1.954 1.446 -1.615 D 139 137 3 140 3 0 0 87 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - A - - - ML 141 140 3 143 3 1 1 89 166 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 142 140 3 143 3 0 0 86 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - C - - - ML 144 143 3 146 3 1 1 88 164 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 145 143 3 146 3 0 0 84 160 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - C - - - ML 147 146 3 149 3 1 1 86 162 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 148 146 3 149 3 0 0 83 158 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - G - - - ML 150 149 3 152 3 1 1 85 160 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 151 149 3 152 3 0 0 81 156 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - G - - - ML 153 152 3 155 3 1 1 83 159 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 154 152 3 155 3 0 0 79 155 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - G - - - ML 156 155 3 158 3 1 1 81 157 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 157 155 3 158 3 0 0 78 153 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - A - - - ML 159 158 3 161 3 1 1 80 155 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 160 158 3 161 3 0 0 76 151 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - U - - - ML 162 161 3 164 3 1 1 78 153 -5.679 -0.057 -5.679 -1.876 -1.513 -2.045 1.648 D 163 161 3 164 3 0 0 74 149 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - G - - - ML 165 164 3 167 3 1 1 77 151 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 166 164 3 167 3 0 0 73 147 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - A - - - ML 168 167 3 170 3 1 1 75 149 -5.679 -0.057 -5.679 1.759 -2.456 -2.193 -2.219 D 169 167 3 170 3 0 0 71 145 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - A - - - ML 171 170 3 173 3 1 1 73 147 -5.679 -0.057 -5.679 1.544 -1.869 -1.077 -1.571 D 172 170 3 173 3 0 0 69 143 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - U - - - ML 174 173 3 176 3 1 1 72 145 -5.679 -0.057 -5.679 -1.876 -1.513 -2.045 1.648 D 175 173 3 176 3 0 0 68 141 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - G - - - ML 177 176 3 179 3 1 1 70 143 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 178 176 3 179 3 0 0 66 138 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - c - - - ML 180 179 3 182 3 1 1 68 141 -5.679 -0.057 -5.679 -1.226 0.689 -1.406 0.663 D 181 179 3 182 3 0 0 64 136 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - C - - - ML 183 182 3 185 3 1 1 66 139 -5.679 -0.057 -5.679 -2.139 1.687 -2.349 -1.484 D 184 182 3 185 3 0 0 62 134 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - U - - - ML 186 185 3 188 3 1 1 64 136 -5.679 -0.057 -5.679 -1.876 -1.513 -2.045 1.648 D 187 185 3 188 3 0 0 60 131 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 73 146 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - G - - - ML 189 188 3 191 3 1 1 62 134 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 190 188 3 191 3 0 0 58 129 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - G - - - ML 192 191 3 194 3 1 1 60 131 -5.679 -0.057 -5.679 -1.898 -2.715 1.763 -2.434 D 193 191 3 194 3 0 0 55 126 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - C - - - ML 195 194 3 197 3 1 1 58 129 -5.679 -0.057 -5.679 -1.817 1.532 -2.036 -0.785 D 196 194 3 197 3 0 0 52 123 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - U - - - ML 198 197 3 200 3 1 1 55 126 -5.679 -0.057 -5.679 -0.937 -0.710 -1.355 1.308 D 199 197 3 200 3 0 0 49 119 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - C - - - ML 201 200 3 203 3 1 1 52 122 -5.679 -0.057 -5.679 -1.295 1.278 -0.942 -0.627 D 202 200 3 203 3 0 0 44 114 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - C - - - ML 204 203 3 206 3 1 1 48 117 -5.679 -0.057 -5.679 -1.000 1.463 -1.806 -1.127 D 205 203 3 206 3 0 0 32 101 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 71 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -1.816 1.531 -2.035 -0.783 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME H19_2 ACC RF01973 DESC H19 conserved region 2 LENG 69 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Mar 5 13:57:44 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 23 EFFN 2.922729 STATS LOCAL MSV -8.6510 0.71876 STATS LOCAL VITERBI -8.9101 0.71876 STATS LOCAL FORWARD -3.6210 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41081 1.12120 1.45614 1.62439 1.38629 1.38629 1.38629 1.38629 0.02351 5.06444 4.07926 0.39730 1.11515 0.00000 * 1 1.71377 0.60936 2.28429 1.74715 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 2 0.71225 2.04390 1.80070 1.53826 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 3 1.80720 2.16931 0.49597 2.18347 - G - - : 1.38629 1.38629 1.38629 1.38629 0.11704 3.93627 2.39764 1.46634 0.26236 1.09861 0.40547 4 2.71455 0.25592 2.85154 2.28465 - C - - : 1.38629 1.38629 1.38629 1.38629 0.07527 3.86218 2.96645 1.46634 0.26236 0.35722 1.20270 5 1.60558 1.84362 2.08534 0.66026 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04101 3.90758 3.90758 1.46634 0.26236 1.49271 0.25459 6 2.80882 0.23135 2.95152 2.36440 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04101 3.90758 3.90758 1.46634 0.26236 0.59698 0.79956 7 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 8 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 9 2.64067 0.32768 2.79170 1.91885 - C - - : 1.38629 1.38629 1.38629 1.38629 0.58683 1.24532 1.85750 0.01438 4.24891 1.09861 0.40547 10 1.84118 1.73859 1.53864 0.79645 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04627 3.78946 3.78946 1.46634 0.26236 0.22328 1.60890 11 2.03359 1.36520 1.98601 0.74116 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 12 1.70878 2.71333 0.40255 2.47712 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 13 2.10796 2.24490 2.49059 0.37148 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 14 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.08276 3.93627 2.81495 1.46634 0.26236 1.09861 0.40547 15 2.55838 0.35646 2.70352 1.86141 - C - - : 1.38629 1.38629 1.38629 1.38629 0.28604 3.89505 1.47654 1.46634 0.26236 1.62313 0.21975 16 1.27428 2.14776 0.78812 1.90433 - g - - : 1.38629 1.38629 1.38629 1.38629 0.05274 3.66175 3.66175 1.46634 0.26236 0.14011 2.03458 17 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 18 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 19 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 20 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 21 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 22 2.55714 0.38608 2.70326 1.73857 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 23 2.33604 0.63260 2.46731 1.24734 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 24 2.16082 2.96692 0.26216 2.75011 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 25 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 26 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 27 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 28 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 29 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 30 1.46532 2.07541 2.15758 0.63887 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 31 2.55714 0.38608 2.70326 1.73857 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 32 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.06970 3.93627 3.04054 1.46634 0.26236 1.09861 0.40547 33 2.62961 2.38777 2.74435 0.25907 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04101 3.90758 3.90758 1.46634 0.26236 0.59698 0.79956 34 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 35 1.12746 2.03233 2.06258 0.87230 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 36 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 37 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09935 2.58956 3.93627 0.06659 2.74238 1.09861 0.40547 38 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 39 2.19183 0.34165 2.69835 2.20385 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 40 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 41 0.36555 2.59716 1.97107 2.38172 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 42 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 43 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 44 1.59766 1.86363 0.99297 1.30178 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 45 1.96534 2.20277 2.40987 0.41617 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 46 1.75633 2.74047 0.38393 2.50592 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 47 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 48 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 49 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 50 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 51 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 52 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 53 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 54 2.68652 2.43478 2.80363 0.24376 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 55 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 56 0.16715 3.08877 2.90659 2.92427 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 57 0.31618 2.68180 2.13306 2.47503 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 58 2.68652 2.43478 2.80363 0.24376 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 59 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 60 2.23618 0.90880 2.36104 0.92684 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 61 2.86865 0.21715 3.01477 2.41512 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 62 2.68652 2.43478 2.80363 0.24376 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 63 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 64 2.70155 3.26813 0.16421 3.07359 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 65 2.64594 0.32438 2.79722 1.93031 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 66 2.03593 1.87821 2.32552 0.47990 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 67 2.28425 0.50059 2.03908 1.82120 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 68 2.07953 0.37243 2.63827 2.16748 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03982 3.93627 3.93627 1.46634 0.26236 1.09861 0.40547 69 2.64528 0.32478 2.79653 1.92889 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99936 0.00000 * //