INFERNAL1/a [1.1.4 | Dec 2020] NAME H19_1 ACC RF01972 DESC H19 conserved region 1 STATES 217 NODES 73 CLEN 71 W 154 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:59:40 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 35 EFFN 2.875366 CKSUM 2884079324 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 53.30 NC 39.80 EFP7GF -7.8175 0.71871 ECMLC 0.55273 -12.03838 -0.46547 1600000 719806 0.001667 ECMGC 0.31445 -19.93729 -1.97215 1600000 113622 0.003520 ECMLI 0.36176 -14.61231 1.79297 1600000 453570 0.002646 ECMGI 0.35874 -9.54202 4.57277 1600000 63261 0.006323 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 154 239 -7.291 -7.498 -0.094 -4.281 IL 1 1 2 1 4 3 30 156 241 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 29 156 240 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 3 29 154 239 -5.621 -0.060 -5.621 -0.521 -1.866 1.423 -1.528 D 4 2 3 5 3 0 25 151 235 -12.154 -2.188 -0.358 IL 5 5 3 5 3 4 31 161 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 2 28 153 237 -5.621 -0.060 -5.621 1.422 -1.629 -0.746 -1.315 D 7 5 3 8 3 0 24 151 235 -12.154 -0.834 -1.188 IL 8 8 3 8 3 3 30 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 2 27 152 236 -5.665 -0.058 -5.665 -1.296 -1.400 1.525 -1.570 D 10 8 3 11 3 0 23 149 232 -11.551 -1.585 -0.585 IL 11 11 3 11 3 3 29 158 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 2 27 150 234 -5.665 -0.058 -5.665 -0.786 -1.774 1.442 -1.283 D 13 11 3 14 3 0 22 147 231 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 28 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 26 149 233 -5.665 -0.058 -5.665 -1.647 1.490 -1.243 -1.156 D 16 14 3 17 3 0 22 146 230 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 28 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 25 148 232 -5.665 -0.058 -5.665 1.364 -1.591 -0.560 -1.267 D 19 17 3 20 3 0 21 145 228 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 27 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 24 146 230 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 22 20 3 23 3 0 20 143 227 -11.551 -1.585 -0.585 IL 23 23 3 23 3 2 26 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 24 145 229 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 25 23 3 26 3 0 20 142 225 -11.551 -1.585 -0.585 IL 26 26 3 26 3 2 25 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 23 144 227 -5.665 -0.058 -5.665 -1.877 -2.685 1.758 -2.404 D 28 26 3 29 3 0 19 141 224 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 24 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 22 143 226 -5.665 -0.058 -5.665 1.753 -2.422 -2.160 -2.183 D 31 29 3 32 3 0 18 139 222 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 24 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 21 141 224 -5.665 -0.058 -5.665 -1.849 -1.491 -2.017 1.641 D 34 32 3 35 3 0 18 138 221 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 23 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 20 140 223 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 37 35 3 38 3 0 17 137 220 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 22 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 1 19 139 221 -5.665 -0.221 -3.031 0.018 0.764 -1.012 -0.333 D 40 38 3 41 3 0 17 136 219 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 21 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 19 137 220 -5.509 -0.065 -5.509 -0.913 1.374 -1.543 -0.908 D 43 41 3 44 3 0 16 135 218 -13.003 -0.403 -2.038 IL 44 44 3 44 3 1 21 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 45 44 3 47 3 1 18 136 218 -5.665 -0.058 -5.665 -0.655 -0.259 0.221 0.448 D 46 44 3 47 3 0 14 133 215 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 20 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 17 135 217 -5.665 -0.083 -4.799 -1.877 -2.685 1.758 -2.404 D 49 47 3 50 3 0 13 132 214 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 19 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 17 133 215 -5.642 -0.059 -5.642 -2.061 1.668 -2.268 -1.419 D 52 50 3 53 3 0 13 131 213 -11.901 -1.069 -0.935 IL 53 53 3 53 3 1 19 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 16 132 214 -5.665 -0.058 -5.665 -1.849 -1.491 -2.017 1.641 D 55 53 3 56 3 0 12 129 211 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 18 139 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 16 131 213 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 58 56 3 59 3 0 11 127 209 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 17 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 15 129 211 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 61 59 3 62 3 0 10 126 208 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 17 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 14 128 210 -5.665 -0.058 -5.665 -0.730 -2.046 1.511 -1.716 D 64 62 3 65 3 0 10 125 206 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 16 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 14 127 208 -5.665 -0.058 -5.665 -1.552 -0.932 -1.736 1.503 D 67 65 3 68 3 0 9 123 204 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 15 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 13 125 206 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 70 68 3 71 3 0 9 122 203 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 15 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 12 124 205 -5.665 -0.058 -5.665 -0.336 -1.822 1.359 -1.477 D 73 71 3 74 3 0 8 121 201 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 14 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 12 123 203 -5.665 -0.058 -5.665 -1.047 1.079 -1.397 0.034 D 76 74 3 77 3 0 7 119 200 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 13 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 11 121 202 -5.665 -0.058 -5.665 -0.874 1.320 -1.550 -0.699 D 79 77 3 80 3 0 7 118 198 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 13 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 11 120 200 -5.665 -0.058 -5.665 -1.177 -2.295 1.633 -1.985 D 82 80 3 83 3 0 6 117 197 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 12 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 10 118 199 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 85 83 3 86 3 0 6 115 195 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 11 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 3 1 9 117 197 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 88 86 3 89 3 0 5 114 194 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 11 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 90 89 3 92 3 1 8 116 196 -3.622 -0.154 -5.665 -1.820 1.541 -2.038 -0.831 D 91 89 3 92 3 0 5 113 193 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 9 116 196 -4.081 -0.088 -11.725 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 93 92 3 95 3 1 8 115 195 -5.665 -0.058 -5.665 -0.929 -1.653 1.405 -0.975 D 94 92 3 95 3 0 4 112 192 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 9 121 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - C - - - ML 96 95 3 98 3 1 7 113 193 -2.320 -0.436 -4.052 -2.111 1.680 -2.320 -1.461 D 97 95 3 98 3 0 4 111 190 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 7 113 193 -5.559 -0.031 -13.203 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - G - - - ML 99 98 3 101 3 1 6 112 192 -5.606 -0.061 -5.606 -0.346 -0.974 1.124 -0.931 D 100 98 3 101 3 0 3 110 189 -12.305 -0.726 -1.339 IL 101 101 3 101 3 1 8 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - A - - - ML 102 101 3 104 3 1 6 111 190 -5.665 -0.058 -5.665 1.502 -1.572 -1.546 -1.030 D 103 101 3 104 3 0 2 108 187 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 7 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - G - - - ML 105 104 3 107 3 1 5 109 189 -5.665 -0.112 -4.179 -1.877 -2.685 1.758 -2.404 D 106 104 3 107 3 0 1 106 186 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 7 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - G - - - ML 108 107 3 110 3 1 5 108 187 -5.613 -0.060 -5.613 -1.795 -2.571 1.739 -2.288 D 109 107 3 110 3 0 1 105 185 -12.229 -0.778 -1.264 IL 110 110 3 110 3 1 6 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - C - - - ML 111 110 3 113 3 1 4 107 186 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 112 110 3 113 3 0 0 103 182 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 5 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - C - - - ML 114 113 3 116 3 1 3 105 184 -5.665 -0.082 -4.810 -2.111 1.680 -2.320 -1.461 D 115 113 3 116 3 0 0 102 181 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 5 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 117 116 3 119 3 1 3 104 182 -5.642 -0.059 -5.642 -2.062 1.669 -2.269 -1.420 D 118 116 3 119 3 0 0 101 179 -11.896 -1.074 -0.930 IL 119 119 3 119 3 1 5 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - g - - - ML 120 119 3 122 3 1 3 102 181 -5.665 -0.058 -5.665 -0.202 -1.090 0.884 -0.293 D 121 119 3 122 3 0 0 99 177 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 4 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - C - - - ML 123 122 3 125 3 1 2 101 179 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 124 122 3 125 3 0 0 97 175 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 4 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - C - - - ML 126 125 3 128 3 1 2 99 178 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 127 125 3 128 3 0 0 96 174 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 3 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 129 128 3 131 3 1 2 98 176 -5.665 -0.058 -5.665 -1.849 -1.491 -2.017 1.641 D 130 128 3 131 3 0 0 95 172 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 3 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - U - - - ML 132 131 3 134 3 1 2 97 174 -5.665 -0.058 -5.665 -1.527 -0.878 -1.710 1.487 D 133 131 3 134 3 0 0 93 170 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 3 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - - - ML 135 134 3 137 3 1 1 95 173 -5.665 -0.058 -5.665 -1.877 -2.685 1.758 -2.404 D 136 134 3 137 3 0 0 92 169 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - G - - - ML 138 137 3 140 3 1 1 94 171 -5.665 -0.058 -5.665 -1.877 -2.685 1.758 -2.404 D 139 137 3 140 3 0 0 90 167 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 2 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - C - - - ML 141 140 3 143 3 1 1 92 169 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 142 140 3 143 3 0 0 89 165 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 2 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - C - - - ML 144 143 3 146 3 1 1 91 167 -5.665 -0.081 -4.852 -2.111 1.680 -2.320 -1.461 D 145 143 3 146 3 0 0 87 164 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - A - - - ML 147 146 3 149 3 1 1 89 166 -5.644 -0.059 -5.644 1.467 -1.711 -0.856 -1.402 D 148 146 3 149 3 0 0 86 162 -11.876 -1.097 -0.910 IL 149 149 3 149 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - C - - - ML 150 149 3 152 3 1 1 88 164 -5.665 -0.058 -5.665 -1.671 1.439 -1.880 -0.508 D 151 149 3 152 3 0 0 84 160 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - G - - - ML 153 152 3 155 3 1 1 86 162 -5.665 -0.058 -5.665 -1.177 -2.295 1.633 -1.985 D 154 152 3 155 3 0 0 83 158 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - G - - - ML 156 155 3 158 3 1 1 85 160 -5.665 -0.083 -4.799 -1.184 -2.299 1.635 -1.990 D 157 155 3 158 3 0 0 81 157 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - G - - - ML 159 158 3 161 3 1 1 83 159 -5.642 -0.059 -5.642 -0.596 -1.938 1.459 -1.603 D 160 158 3 161 3 0 0 80 155 -11.901 -1.069 -0.935 IL 161 161 3 161 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - C - - - ML 162 161 3 164 3 1 1 81 157 -5.665 -0.058 -5.665 -2.111 1.680 -2.320 -1.461 D 163 161 3 164 3 0 0 78 153 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - U - - - ML 165 164 3 167 3 1 1 80 155 -5.665 -0.058 -5.665 -1.553 -0.935 -1.737 1.504 D 166 164 3 167 3 0 0 76 151 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - C - - - ML 168 167 3 170 3 1 1 78 153 -5.665 -0.204 -3.153 -2.111 1.680 -2.320 -1.461 D 169 167 3 170 3 0 0 75 150 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - U - - - ML 171 170 3 173 3 1 1 77 151 -5.525 -0.091 -4.664 -0.505 -0.368 -0.965 1.006 D 172 170 3 173 3 0 0 74 148 -12.912 -0.434 -1.946 IL 173 173 3 173 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - G - - - ML 174 173 3 176 3 1 1 75 149 -5.642 -0.059 -5.642 -1.840 -2.634 1.750 -2.352 D 175 173 3 176 3 0 0 71 144 -11.898 -1.933 -0.439 IL 176 176 3 176 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - G - - - ML 177 176 3 179 3 1 1 73 147 -5.642 -0.059 -5.642 -0.683 -1.988 1.489 -1.656 D 178 176 3 179 3 0 0 69 142 -11.898 -1.933 -0.439 IL 179 179 3 179 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - A - - - ML 180 179 3 182 3 1 1 72 145 -5.642 -0.059 -5.642 1.741 -2.362 -2.101 -2.122 D 181 179 3 182 3 0 0 67 140 -11.898 -1.933 -0.439 IL 182 182 3 182 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - G - - - ML 183 182 3 185 3 1 1 70 143 -5.642 -0.059 -5.642 -0.908 -2.113 1.559 -1.792 D 184 182 3 185 3 0 0 66 138 -11.898 -1.933 -0.439 IL 185 185 3 185 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - G - - - ML 186 185 3 188 3 1 1 68 141 -5.642 -0.059 -5.642 -1.085 -1.500 1.315 -0.543 D 187 185 3 188 3 0 0 64 137 -11.898 -1.071 -0.933 IL 188 188 3 188 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - C - - - ML 189 188 3 191 3 1 1 66 139 -5.665 -0.082 -4.804 -2.111 1.680 -2.320 -1.461 D 190 188 3 191 3 0 0 62 134 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - C - - - ML 192 191 3 194 3 1 1 64 136 -5.642 -0.059 -5.642 -2.062 1.669 -2.268 -1.419 D 193 191 3 194 3 0 0 60 131 -11.898 -1.933 -0.439 IL 194 194 3 194 3 1 1 73 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - A - - - ML 195 194 3 197 3 1 1 62 134 -5.642 -0.059 -5.642 1.741 -2.362 -2.101 -2.122 D 196 194 3 197 3 0 0 58 130 -11.898 -1.071 -0.933 IL 197 197 3 197 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - G - - - ML 198 197 3 200 3 1 1 60 131 -5.665 -0.087 -4.684 -1.184 -2.299 1.635 -1.990 D 199 197 3 200 3 0 0 56 126 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - U - - - ML 201 200 3 203 3 1 1 58 129 -5.637 -0.059 -5.637 -1.270 -0.290 -1.449 1.264 D 202 200 3 203 3 0 0 53 124 -11.957 -1.010 -0.991 IL 203 203 3 203 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - G - - - ML 204 203 3 206 3 1 1 55 126 -5.665 -0.058 -5.665 -1.877 -2.685 1.758 -2.404 D 205 203 3 206 3 0 0 49 119 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 71 - C - - - ML 207 206 3 209 3 1 1 52 122 -5.665 -0.058 -5.665 -1.163 1.503 -1.875 -1.164 D 208 206 3 209 3 0 0 44 114 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 72 - C - - - ML 210 209 3 212 3 1 1 48 117 -5.665 -0.082 -4.804 -2.111 1.680 -2.320 -1.461 D 211 209 3 212 3 0 0 32 101 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 73 - u - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 -1.165 0.514 -1.341 0.792 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME H19_1 ACC RF01972 DESC H19 conserved region 1 LENG 71 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Mar 5 13:59:40 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 35 EFFN 2.875366 STATS LOCAL MSV -8.6757 0.71871 STATS LOCAL VITERBI -9.1203 0.71871 STATS LOCAL FORWARD -3.0989 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.77854 1.02698 1.22301 1.72213 1.38629 1.38629 1.38629 1.38629 0.06009 5.05389 2.95771 0.39730 1.11515 0.00000 * 1 1.74712 2.67979 0.39980 2.44539 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04150 3.89584 3.89584 1.46634 0.26236 1.51648 0.24780 2 0.40097 2.51548 1.90362 2.29779 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04150 3.89584 3.89584 1.46634 0.26236 0.57797 0.82333 3 2.28480 2.35672 0.32951 2.47454 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 4 1.93112 2.61623 0.38684 2.27560 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 5 2.52763 0.35332 2.24784 2.18772 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 6 0.44072 2.48935 1.77445 2.26444 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 7 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 8 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 9 2.68709 3.24773 0.16743 3.05292 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 10 0.17154 3.06503 2.88338 2.89974 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 11 2.66800 2.41949 2.78436 0.24862 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 12 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 13 1.37392 0.85681 2.08784 1.61736 - c - - : 1.38629 1.38629 1.38629 1.38629 0.15323 3.92698 2.10074 1.46634 0.26236 1.09861 0.40547 14 2.01880 0.43363 2.45614 2.01539 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04491 3.81866 3.81866 1.46634 0.26236 0.27917 1.41227 15 1.84007 1.56607 1.23330 1.07588 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 16 2.68709 3.24773 0.16743 3.05292 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05724 3.92698 3.32630 1.46634 0.26236 1.09861 0.40547 17 2.81518 0.22980 2.95825 2.36979 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 0.74045 0.64798 18 2.66800 2.41949 2.78436 0.24862 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 19 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 20 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 21 1.89253 2.80470 0.33872 2.57566 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 22 2.46209 2.03248 2.58928 0.34438 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 23 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 24 1.61897 2.64910 0.44414 2.41012 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 25 2.11203 0.63852 2.35461 1.36257 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 26 1.99219 0.47116 2.46073 1.87112 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 27 2.20218 2.97707 0.25442 2.76251 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 28 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 29 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 30 2.64781 0.31784 2.79866 1.96196 - C - - : 1.38629 1.38629 1.38629 1.38629 0.10641 2.51028 3.92698 0.06093 2.82835 1.09861 0.40547 31 2.02996 2.53193 0.41255 2.06204 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 32 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.30190 1.60790 2.80872 0.02145 3.85295 1.09861 0.40547 33 1.62614 2.06159 0.60707 2.03166 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04194 3.88556 3.88556 1.46634 0.26236 0.50301 0.92813 34 0.34544 2.47593 2.45799 2.10045 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 35 2.68709 3.24773 0.16743 3.05292 - G - - : 1.38629 1.38629 1.38629 1.38629 0.07784 3.92698 2.89700 1.46634 0.26236 1.09861 0.40547 36 2.63066 3.16805 0.18069 2.97221 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04171 3.89085 3.89085 1.46634 0.26236 0.53885 0.87568 37 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 38 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05695 3.92698 3.33372 1.46634 0.26236 1.09861 0.40547 39 2.81574 0.22966 2.95884 2.37026 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91090 3.91090 1.46634 0.26236 0.74433 0.64445 40 1.52660 2.14188 0.77375 1.58958 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 41 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 42 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 43 2.66800 2.41949 2.78436 0.24862 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 44 2.44446 1.99496 2.57190 0.35551 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 45 2.68709 3.24773 0.16743 3.05292 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 46 2.68709 3.24773 0.16743 3.05292 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 47 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 48 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05586 3.92698 3.36328 1.46634 0.26236 1.09861 0.40547 49 0.36962 2.57260 1.97985 2.35838 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04082 3.91195 3.91195 1.46634 0.26236 0.75996 0.63052 50 2.54442 0.38890 2.68965 1.73857 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 51 2.20218 2.97707 0.25442 2.76251 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 52 2.20699 2.97973 0.25333 2.76541 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05724 3.92698 3.32630 1.46634 0.26236 1.09861 0.40547 53 1.79959 2.72974 0.37531 2.49714 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 0.74045 0.64798 54 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 55 2.46287 2.03410 2.59004 0.34391 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 56 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.14174 3.92698 2.18526 1.46634 0.26236 1.09861 0.40547 57 1.73606 1.64144 2.05525 0.68911 - U - - : 1.38629 1.38629 1.38629 1.38629 0.06312 3.82965 3.23271 1.46634 0.26236 0.30043 1.34900 58 2.66180 3.21202 0.17323 3.01675 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91076 3.91076 1.46634 0.26236 1.33935 0.30383 59 1.85993 2.76401 0.35393 2.53387 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91076 3.91076 1.46634 0.26236 1.33935 0.30383 60 0.17949 3.02381 2.84291 2.85717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91076 3.91076 1.46634 0.26236 1.33935 0.30383 61 2.01569 2.85123 0.30546 2.62810 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91076 3.91076 1.46634 0.26236 1.33935 0.30383 62 2.13837 2.42574 0.47463 1.76243 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91076 3.91076 1.46634 0.26236 0.74241 0.64620 63 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05709 3.92698 3.33005 1.46634 0.26236 1.09861 0.40547 64 2.81546 0.22973 2.95855 2.37003 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91076 3.91076 1.46634 0.26236 1.33935 0.30383 65 0.17949 3.02381 2.84291 2.85717 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04087 3.91076 3.91076 1.46634 0.26236 0.74241 0.64620 66 2.20699 2.97973 0.25333 2.76541 - G - - : 1.38629 1.38629 1.38629 1.38629 0.06039 3.92698 3.24672 1.46634 0.26236 1.09861 0.40547 67 2.26670 1.58755 2.39054 0.51026 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04101 3.90760 3.90760 1.46634 0.26236 0.69961 0.68673 68 2.68709 3.24773 0.16743 3.05292 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 69 2.19228 0.34443 2.68621 2.19305 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92698 3.92698 1.46634 0.26236 1.09861 0.40547 70 2.84928 0.22164 2.99430 2.39868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05709 3.92698 3.33005 1.46634 0.26236 1.09861 0.40547 71 2.19368 1.03020 2.31613 0.83724 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //