INFERNAL1/a [1.1.5 | Sep 2023] NAME H19_1 ACC RF01972 DESC H19 conserved region 1 STATES 217 NODES 73 CLEN 71 W 154 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 05:41:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01972/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 35 EFFN 2.866821 CKSUM 2884079324 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.20 NC 49.90 EFP7GF -7.8145 0.71870 ECMLC 0.55571 -11.97662 -0.46124 1600000 721626 0.001663 ECMGC 0.31321 -20.05458 -2.00940 1600000 113931 0.003511 ECMLI 0.36387 -14.50089 1.81551 1600000 454585 0.002640 ECMGI 0.36250 -9.36128 4.61103 1600000 63348 0.006314 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 154 239 -7.288 -7.495 -0.095 -4.264 IL 1 1 2 1 4 3 30 156 241 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 29 156 240 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 3 29 154 239 -5.617 -0.060 -5.617 -0.566 -1.888 1.440 -1.551 D 4 2 3 5 3 0 25 151 235 -12.161 -2.195 -0.356 IL 5 5 3 5 3 4 31 161 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 2 28 153 237 -5.617 -0.060 -5.617 1.435 -1.646 -0.787 -1.334 D 7 5 3 8 3 0 24 151 235 -12.161 -0.828 -1.195 IL 8 8 3 8 3 3 30 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 2 27 152 236 -5.663 -0.058 -5.663 -1.291 -1.388 1.521 -1.560 D 10 8 3 11 3 0 23 149 232 -11.551 -1.585 -0.585 IL 11 11 3 11 3 3 29 158 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 2 27 150 234 -5.663 -0.058 -5.663 -0.775 -1.762 1.436 -1.269 D 13 11 3 14 3 0 22 147 231 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 28 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 26 149 233 -5.663 -0.058 -5.663 -1.637 1.486 -1.229 -1.149 D 16 14 3 17 3 0 22 146 230 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 28 155 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 25 148 232 -5.663 -0.058 -5.663 1.374 -1.601 -0.587 -1.278 D 19 17 3 20 3 0 21 145 228 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 27 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 24 146 230 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 22 20 3 23 3 0 20 143 227 -11.551 -1.585 -0.585 IL 23 23 3 23 3 2 26 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 24 145 229 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 25 23 3 26 3 0 20 142 225 -11.551 -1.585 -0.585 IL 26 26 3 26 3 2 25 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 23 144 227 -5.663 -0.058 -5.663 -1.873 -2.680 1.758 -2.399 D 28 26 3 29 3 0 19 141 224 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 24 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 22 143 226 -5.663 -0.058 -5.663 1.751 -2.416 -2.154 -2.177 D 31 29 3 32 3 0 18 139 222 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 24 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 21 141 224 -5.663 -0.058 -5.663 -1.844 -1.487 -2.012 1.640 D 34 32 3 35 3 0 18 138 221 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 23 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 20 140 223 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 37 35 3 38 3 0 17 137 220 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 22 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 1 19 139 221 -5.663 -0.211 -3.101 0.031 0.763 -1.013 -0.348 D 40 38 3 41 3 0 17 136 219 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 21 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 19 137 220 -5.516 -0.064 -5.516 -0.915 1.378 -1.553 -0.916 D 43 41 3 44 3 0 16 135 218 -12.949 -0.421 -1.983 IL 44 44 3 44 3 1 21 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 45 44 3 47 3 1 18 136 218 -5.663 -0.058 -5.663 -0.655 -0.286 0.239 0.449 D 46 44 3 47 3 0 14 133 215 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 20 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 17 135 217 -5.663 -0.083 -4.784 -1.873 -2.680 1.758 -2.399 D 49 47 3 50 3 0 13 132 214 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 19 141 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 17 133 216 -5.639 -0.059 -5.639 -2.055 1.667 -2.261 -1.414 D 52 50 3 53 3 0 13 131 213 -11.907 -1.062 -0.941 IL 53 53 3 53 3 1 19 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 16 132 214 -5.663 -0.058 -5.663 -1.844 -1.487 -2.012 1.640 D 55 53 3 56 3 0 12 129 211 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 18 139 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 16 131 213 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 58 56 3 59 3 0 11 127 209 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 17 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 15 129 211 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 61 59 3 62 3 0 10 126 208 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 17 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 14 128 210 -5.663 -0.058 -5.663 -0.752 -2.055 1.518 -1.726 D 64 62 3 65 3 0 10 125 206 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 16 135 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 14 127 208 -5.663 -0.058 -5.663 -1.545 -0.924 -1.728 1.500 D 67 65 3 68 3 0 9 123 205 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 15 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 13 125 207 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 70 68 3 71 3 0 9 122 203 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 15 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 12 124 205 -5.663 -0.058 -5.663 -0.359 -1.832 1.369 -1.488 D 73 71 3 74 3 0 8 121 201 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 14 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 12 123 203 -5.663 -0.058 -5.663 -1.053 1.092 -1.404 0.013 D 76 74 3 77 3 0 7 119 200 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 13 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 11 121 202 -5.663 -0.058 -5.663 -0.909 1.330 -1.565 -0.700 D 79 77 3 80 3 0 7 118 198 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 13 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 10 120 200 -5.663 -0.058 -5.663 -1.166 -2.285 1.630 -1.975 D 82 80 3 83 3 0 6 117 197 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 12 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 10 118 199 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 85 83 3 86 3 0 6 115 195 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 11 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 3 1 9 117 197 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 88 86 3 89 3 0 5 114 194 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 11 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 90 89 3 92 3 1 8 116 196 -3.735 -0.144 -5.663 -1.812 1.538 -2.029 -0.820 D 91 89 3 92 3 0 5 113 193 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 9 116 196 -3.939 -0.098 -11.582 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 93 92 3 95 3 1 8 115 195 -5.663 -0.058 -5.663 -0.931 -1.667 1.413 -1.006 D 94 92 3 95 3 0 4 112 192 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 9 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - C - - - ML 96 95 3 98 3 1 7 113 193 -2.358 -0.420 -4.115 -2.106 1.679 -2.315 -1.456 D 97 95 3 98 3 0 4 111 190 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 7 113 193 -5.515 -0.032 -13.158 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - G - - - ML 99 98 3 101 3 1 6 112 192 -5.607 -0.060 -5.607 -0.340 -0.987 1.126 -0.936 D 100 98 3 101 3 0 3 110 189 -12.266 -0.752 -1.300 IL 101 101 3 101 3 1 8 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - A - - - ML 102 101 3 104 3 1 6 111 190 -5.663 -0.058 -5.663 1.511 -1.592 -1.561 -1.062 D 103 101 3 104 3 0 2 108 187 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 7 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - G - - - ML 105 104 3 107 3 1 5 109 189 -5.663 -0.111 -4.204 -1.873 -2.680 1.758 -2.399 D 106 104 3 107 3 0 1 106 186 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 7 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - G - - - ML 108 107 3 110 3 1 5 108 187 -5.612 -0.060 -5.612 -1.794 -2.568 1.739 -2.286 D 109 107 3 110 3 0 1 105 185 -12.214 -0.789 -1.248 IL 110 110 3 110 3 1 6 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - C - - - ML 111 110 3 113 3 1 4 107 186 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 112 110 3 113 3 0 0 103 182 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 5 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - C - - - ML 114 113 3 116 3 1 3 105 184 -5.663 -0.083 -4.795 -2.106 1.679 -2.315 -1.456 D 115 113 3 116 3 0 0 102 181 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 5 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 117 116 3 119 3 1 3 104 182 -5.639 -0.059 -5.639 -2.056 1.667 -2.262 -1.414 D 118 116 3 119 3 0 0 101 179 -11.902 -1.068 -0.936 IL 119 119 3 119 3 1 5 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - g - - - ML 120 119 3 122 3 1 3 102 181 -5.663 -0.058 -5.663 -0.213 -1.087 0.884 -0.284 D 121 119 3 122 3 0 0 99 177 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 4 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - C - - - ML 123 122 3 125 3 1 2 101 179 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 124 122 3 125 3 0 0 97 176 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 4 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - C - - - ML 126 125 3 128 3 1 2 99 178 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 127 125 3 128 3 0 0 96 174 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 3 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 129 128 3 131 3 1 2 98 176 -5.663 -0.058 -5.663 -1.844 -1.487 -2.012 1.640 D 130 128 3 131 3 0 0 95 172 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 3 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - U - - - ML 132 131 3 134 3 1 2 97 174 -5.663 -0.058 -5.663 -1.532 -0.896 -1.716 1.492 D 133 131 3 134 3 0 0 93 171 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 3 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - G - - - ML 135 134 3 137 3 1 1 95 173 -5.663 -0.058 -5.663 -1.873 -2.680 1.758 -2.399 D 136 134 3 137 3 0 0 92 169 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 2 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - G - - - ML 138 137 3 140 3 1 1 94 171 -5.663 -0.058 -5.663 -1.873 -2.680 1.758 -2.399 D 139 137 3 140 3 0 0 90 167 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 2 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - C - - - ML 141 140 3 143 3 1 1 92 169 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 142 140 3 143 3 0 0 89 165 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 2 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - C - - - ML 144 143 3 146 3 1 1 91 167 -5.663 -0.081 -4.853 -2.106 1.679 -2.315 -1.456 D 145 143 3 146 3 0 0 87 164 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - A - - - ML 147 146 3 149 3 1 1 89 166 -5.641 -0.059 -5.641 1.462 -1.703 -0.844 -1.393 D 148 146 3 149 3 0 0 86 162 -11.875 -1.098 -0.909 IL 149 149 3 149 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - C - - - ML 150 149 3 152 3 1 1 88 164 -5.663 -0.058 -5.663 -1.662 1.434 -1.871 -0.497 D 151 149 3 152 3 0 0 84 160 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - G - - - ML 153 152 3 155 3 1 1 86 162 -5.663 -0.058 -5.663 -1.166 -2.285 1.630 -1.975 D 154 152 3 155 3 0 0 83 158 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - G - - - ML 156 155 3 158 3 1 1 85 160 -5.663 -0.083 -4.784 -1.177 -2.292 1.632 -1.982 D 157 155 3 158 3 0 0 81 157 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - G - - - ML 159 158 3 161 3 1 1 83 159 -5.639 -0.059 -5.639 -0.582 -1.926 1.452 -1.590 D 160 158 3 161 3 0 0 80 155 -11.907 -1.062 -0.941 IL 161 161 3 161 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - C - - - ML 162 161 3 164 3 1 1 81 157 -5.663 -0.058 -5.663 -2.106 1.679 -2.315 -1.456 D 163 161 3 164 3 0 0 78 153 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - U - - - ML 165 164 3 167 3 1 1 80 155 -5.663 -0.058 -5.663 -1.546 -0.926 -1.730 1.501 D 166 164 3 167 3 0 0 76 151 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - C - - - ML 168 167 3 170 3 1 1 78 153 -5.663 -0.200 -3.188 -2.106 1.679 -2.315 -1.456 D 169 167 3 170 3 0 0 75 150 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - U - - - ML 171 170 3 173 3 1 1 77 151 -5.527 -0.091 -4.653 -0.534 -0.378 -0.982 1.024 D 172 170 3 173 3 0 0 74 148 -12.884 -0.443 -1.919 IL 173 173 3 173 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - G - - - ML 174 173 3 176 3 1 1 75 149 -5.639 -0.059 -5.639 -1.836 -2.628 1.749 -2.346 D 175 173 3 176 3 0 0 71 144 -11.904 -1.939 -0.437 IL 176 176 3 176 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - G - - - ML 177 176 3 179 3 1 1 73 147 -5.639 -0.059 -5.639 -0.711 -1.999 1.498 -1.668 D 178 176 3 179 3 0 0 69 142 -11.904 -1.939 -0.437 IL 179 179 3 179 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - A - - - ML 180 179 3 182 3 1 1 72 145 -5.639 -0.059 -5.639 1.740 -2.355 -2.094 -2.114 D 181 179 3 182 3 0 0 67 140 -11.904 -1.939 -0.437 IL 182 182 3 182 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - G - - - ML 183 182 3 185 3 1 1 70 143 -5.639 -0.059 -5.639 -0.938 -2.126 1.567 -1.806 D 184 182 3 185 3 0 0 66 139 -11.904 -1.939 -0.437 IL 185 185 3 185 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - G - - - ML 186 185 3 188 3 1 1 68 141 -5.639 -0.059 -5.639 -1.091 -1.512 1.326 -0.570 D 187 185 3 188 3 0 0 64 137 -11.904 -1.065 -0.939 IL 188 188 3 188 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - C - - - ML 189 188 3 191 3 1 1 66 139 -5.663 -0.083 -4.789 -2.106 1.679 -2.315 -1.456 D 190 188 3 191 3 0 0 62 134 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - C - - - ML 192 191 3 194 3 1 1 64 136 -5.639 -0.059 -5.639 -2.056 1.667 -2.262 -1.414 D 193 191 3 194 3 0 0 60 131 -11.904 -1.939 -0.437 IL 194 194 3 194 3 1 1 73 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - A - - - ML 195 194 3 197 3 1 1 62 134 -5.639 -0.059 -5.639 1.740 -2.355 -2.094 -2.114 D 196 194 3 197 3 0 0 58 130 -11.904 -1.065 -0.939 IL 197 197 3 197 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - G - - - ML 198 197 3 200 3 1 1 60 131 -5.663 -0.087 -4.679 -1.177 -2.292 1.632 -1.982 D 199 197 3 200 3 0 0 56 126 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - U - - - ML 201 200 3 203 3 1 1 58 129 -5.635 -0.059 -5.635 -1.274 -0.314 -1.453 1.273 D 202 200 3 203 3 0 0 53 124 -11.958 -1.008 -0.993 IL 203 203 3 203 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - G - - - ML 204 203 3 206 3 1 1 55 126 -5.663 -0.058 -5.663 -1.873 -2.680 1.758 -2.399 D 205 203 3 206 3 0 0 49 119 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 71 - C - - - ML 207 206 3 209 3 1 1 52 122 -5.663 -0.058 -5.663 -1.150 1.499 -1.865 -1.157 D 208 206 3 209 3 0 0 44 114 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 72 - C - - - ML 210 209 3 212 3 1 1 48 117 -5.663 -0.083 -4.789 -2.106 1.679 -2.315 -1.456 D 211 209 3 212 3 0 0 32 101 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 73 - u - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 -1.160 0.488 -1.337 0.811 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 72 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME H19_1 ACC RF01972 DESC H19 conserved region 1 LENG 71 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 05:41:32 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01972/CM NSEQ 35 EFFN 2.866821 CKSUM 2884079324 STATS LOCAL MSV -8.6656 0.71870 STATS LOCAL VITERBI -9.1129 0.71870 STATS LOCAL FORWARD -3.1014 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.77831 1.02800 1.22229 1.72147 1.38629 1.38629 1.38629 1.38629 0.06077 5.05198 2.94581 0.39730 1.11515 0.00000 * 1 1.77878 2.69473 0.38817 2.46157 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04160 3.89363 3.89363 1.46634 0.26236 1.52158 0.24637 2 0.39140 2.52713 1.93212 2.31100 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04160 3.89363 3.89363 1.46634 0.26236 0.57400 0.82843 3 2.28084 2.34810 0.33200 2.46792 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 4 1.92341 2.60789 0.39085 2.26605 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 5 2.52080 0.35639 2.23805 2.18266 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 6 0.43373 2.49617 1.79321 2.27218 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 7 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 8 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 9 2.68447 3.24402 0.16802 3.04917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 10 0.17235 3.06074 2.87917 2.89531 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 11 2.66465 2.41672 2.78087 0.24952 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 12 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 13 1.36484 0.85742 2.08820 1.62755 - c - - : 1.38629 1.38629 1.38629 1.38629 0.14650 3.92530 2.14954 1.46634 0.26236 1.09861 0.40547 14 2.02045 0.43123 2.46290 2.02112 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04469 3.82349 3.82349 1.46634 0.26236 0.29171 1.37432 15 1.84017 1.58464 1.22092 1.07520 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 16 2.68447 3.24402 0.16802 3.04917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05766 3.92530 3.31604 1.46634 0.26236 1.09861 0.40547 17 2.81095 0.23083 2.95378 2.36621 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90860 3.90860 1.46634 0.26236 0.73597 0.65208 18 2.66465 2.41672 2.78087 0.24952 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 19 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 20 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 21 1.90769 2.81089 0.33429 2.58253 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 22 2.45735 2.02668 2.58439 0.34655 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 23 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 24 1.63530 2.65615 0.43733 2.41768 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 25 2.11612 0.62970 2.35960 1.37718 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 26 2.01635 0.46440 2.47115 1.87172 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 27 2.19442 2.97045 0.25654 2.75557 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 28 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 29 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 30 2.64218 0.32031 2.79269 1.95466 - C - - : 1.38629 1.38629 1.38629 1.38629 0.09965 2.58880 3.92530 0.06746 2.72971 1.09861 0.40547 31 2.03155 2.54210 0.40690 2.08378 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 32 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.29135 1.63459 2.85226 0.02212 3.82231 1.09861 0.40547 33 1.62218 2.07054 0.60559 2.03516 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04190 3.88658 3.88658 1.46634 0.26236 0.52113 0.90102 34 0.33877 2.48987 2.46852 2.12256 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 35 2.68447 3.24402 0.16802 3.04917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.07687 3.92530 2.91415 1.46634 0.26236 1.09861 0.40547 36 2.62960 3.16655 0.18095 2.97070 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04174 3.89018 3.89018 1.46634 0.26236 0.54673 0.86474 37 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 38 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05738 3.92530 3.32353 1.46634 0.26236 1.09861 0.40547 39 2.81153 0.23069 2.95438 2.36670 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04095 3.90888 3.90888 1.46634 0.26236 0.73988 0.64850 40 1.53420 2.13997 0.77367 1.58281 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 41 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 42 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 43 2.66465 2.41672 2.78087 0.24952 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 44 2.44830 2.00751 2.57548 0.35223 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 45 2.68447 3.24402 0.16802 3.04917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 46 2.68447 3.24402 0.16802 3.04917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 47 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 48 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05588 3.92530 3.36353 1.46634 0.26236 1.09861 0.40547 49 0.37284 2.56648 1.97164 2.35188 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04089 3.91031 3.91031 1.46634 0.26236 0.76099 0.62961 50 2.53836 0.39235 2.68319 1.73051 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 51 2.19442 2.97045 0.25654 2.75557 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 52 2.20204 2.97468 0.25479 2.76016 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05766 3.92530 3.31604 1.46634 0.26236 1.09861 0.40547 53 1.78967 2.72134 0.37957 2.48839 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90860 3.90860 1.46634 0.26236 0.73597 0.65208 54 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 55 2.45813 2.02832 2.58516 0.34607 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 56 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.13865 3.92530 2.20971 1.46634 0.26236 1.09861 0.40547 57 1.75648 1.64820 2.06731 0.67643 - U - - : 1.38629 1.38629 1.38629 1.38629 0.06339 3.83099 3.22552 1.46634 0.26236 0.30727 1.32972 58 2.65864 3.20755 0.17397 3.01223 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90874 3.90874 1.46634 0.26236 1.34342 0.30239 59 1.87916 2.77205 0.34800 2.54276 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90874 3.90874 1.46634 0.26236 1.34342 0.30239 60 0.18051 3.01869 2.83787 2.85187 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90874 3.90874 1.46634 0.26236 1.34342 0.30239 61 2.03649 2.86004 0.30011 2.63795 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90874 3.90874 1.46634 0.26236 1.34342 0.30239 62 2.14251 2.43443 0.46741 1.78158 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90874 3.90874 1.46634 0.26236 0.73795 0.65027 63 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05752 3.92530 3.31983 1.46634 0.26236 1.09861 0.40547 64 2.81124 0.23076 2.95408 2.36646 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90874 3.90874 1.46634 0.26236 1.34342 0.30239 65 0.18051 3.01869 2.83787 2.85187 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04096 3.90874 3.90874 1.46634 0.26236 0.73795 0.65027 66 2.20204 2.97468 0.25479 2.76016 - G - - : 1.38629 1.38629 1.38629 1.38629 0.06058 3.92530 3.24306 1.46634 0.26236 1.09861 0.40547 67 2.26934 1.60374 2.39318 0.50395 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04108 3.90580 3.90580 1.46634 0.26236 0.69862 0.68771 68 2.68447 3.24402 0.16802 3.04917 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 69 2.18316 0.34733 2.67916 2.18815 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04027 3.92530 3.92530 1.46634 0.26236 1.09861 0.40547 70 2.84576 0.22246 2.99059 2.39570 - C - - : 1.38629 1.38629 1.38629 1.38629 0.05752 3.92530 3.31983 1.46634 0.26236 1.09861 0.40547 71 2.19048 1.04837 2.31272 0.82408 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //