# STOCKHOLM 1.0
#=GF ID RMST_9
#=GF AC RF01970
#=GF DE Rhabdomyosarcoma 2 associated transcript conserved region 9
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 65.0
#=GF NC 64.9
#=GF TC 66.0
#=GF PI NCRMS
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.38 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 20062813
#=GF RT Rmst is a novel marker for the mouse ventral mesencephalic floor plate and
#=GF RT the anterior dorsal midline cells.
#=GF RA Uhde CW, Vives J, Jaeger I, Li M
#=GF RL PLoS One. 2010;5:e8641.
#=GF WK RMST_(gene)
#=GF SQ 28

AC018659.35/136389-136197    CUGCCUU-AGACAAAGAAUGCACUCG-GAGCCCCAACACACCUAAAGCCA---UGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACACGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGU---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AAGV020089263.1/424-616      CUGCCUU-AGACAAAGGAUACACCCG-GAGCCCCACCACACCUAAAGCCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AAWR02024755.1/19270-19462   CUGCCUU-AGACAAAGGAUGCACUGG-GAGCCCCACCACACCUCAAGCCA---UGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCACGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AC235682.1/15852-16043       GUGCCUU-AGACAAAGGACGCAC-GG-GAGCCCCACCACACCUAGAGCCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AAIY01406812.1/3781-3588     CUGACUU-AAACAAAGGAGGCACUUGGGGCCCCCACCACACCUAAAGCCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACACGGAGUCAGCAGAAAAUGAGAAAGGAGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
ABRQ01017969.1/3629-3820     CUGCGUU-AGACAAAGGAUGCACU-G-GAGCCCCACCACACCUAAAGGCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUCGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGACUU-C
AAFC03093132.1/129241-129433 CUGCCUU-AGACAAAGGAGGCACUCG-GAGCCCCACCACACCUCAAACCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGGAAGGAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUGGAGUUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGUUU-C
AC125204.4/99243-99051       CUGCCUU-AGACAAAGGAAGUGCUUG-GAGCCCCACCACACCUAAAACCA---UGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGACAGCAGAAAAUGAGAAAGUAGAGAUCGUGCUGC---GAAUAAUUCCAGCGA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
ABRP01000338.1/6046-6238     CUGCCUU-AGACAAAGGAUGCACUCA-GAACCUCACCACACCUAAAGCCA---UGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--AGAAUGGCUC-C
AAYZ01074763.1/3120-3311     CUGCCUU-ACACAAUGGAUACACUUG-GCGCCCCACCACACCUAAAGCCA---CACUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUGGAGCUCGUGCUGC---GAAUAAUCCU-GCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AAKN02013867.1/8936-8744     CUGCCCU-AGACAAAGGAUGCACUUG-GAUCCCCACCACACCUAUAACCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGACAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGC---GAAUAAUUCCAGUGA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
ABRN01423266.1/3006-3198     CUGCCUU-AGACAAAGGAUGCACUCG-GAGCCCCGCCACACCUUAAGCCA---CGCUCUGAAGGAUCUGCCCAGCUCACUUUUAAUCACGAGCAAGGAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAAAGCUCGUGGUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
ABRO01249224.1/910-1103      CUGCCUU-AAACAAAGGAUGGACUGCCAAGCCCCACCACAUCUCAAACCA---UGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCACGAGAAAGAAA-UUACCCACAUGGAGACAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGC---GAAUAAUUCCGGCGA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
ABRR01116081.1/11788-11980   CUGCCCG-AGACAAAGGAUGCGCUCA-GAGCCCCACCACACCUGGAGCCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCGGGAGAACGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGC---GAAUCAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AAHX01048282.1/85626-85818   UUGCCUU-AGACAAAGGAUGCUCUUG-GAGUCCCACCACACCUAAAACCA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGACAGCAGAAAAUGAGAAAGGAGAGAUCGUGCUGC---GAAUAAUUCCAGCGA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AAQQ01081945.1/6731-6920     CUGCU-U-AGACAAAGGCUGUCCUUG-GAGCCCCAACACACCCCAAGC-A---CGCUUUGAAGGAUCU-CCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGACAGCAGAAAAUGAGAAAGUUGAGCUCGUGCUGC---GAAUAAUUCCAGCGA-GUGCCAAGGGGCUAGUUGA--GGAAUGACUU-C
AAPN01014431.1/29797-29605   CCUUUCUGAGACAAAGAAUCCACUCU-GAGCCCAACCACACCUAA-GAAA---UGCUUUGAAGGAAUUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAAAAAGUAGAGCUCGUGCUGU---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GAAAUGGCUU-C
AANN01526683.1/4045-3852     CCACCUU-AGACAAAGGCUGCUCUCA-GGGCCUCACCGCACCUAGGAGCA---GGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCACGGGAAAAAAAAUUAUCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAACUCACGCUGC---GAGUAAUUCUAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
ABQF01015694.1/2975-3163     CCUUUUUGAGACAAAGGAUCCACUCC-ACCUCC-----UACCUAAGGAAA---UGCUUUGAAGGAAUUGACAAGCUCACUUUUAAUCACAAGAGAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAAAAAGUAGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GAAAUGGCUU-C
ABRT010183405.1/2872-3059    CUGCUC--AGACAAGGGGUGCUCUUG-GAGCCC--CCACACCUCUAGCCG---UGCUUUGAAGGCUCUGCCAAGCCCACUUUUAAUCCUGAGAAAGAAA-UCACCCACACGGAGUCCGCAGAAAAUGAGAAAGUGGAGCUCGUGCUGC---GAAUCGUUCCAGCCA-GGGCCCCGGGGCUAGUGGA--GGAACGGC---C
AAFR03039563.1/286089-285893 GUAUCCUGAGACAAAGAAUUCGCUCCGGAGCCCCACCACACCUAAAAAAAAAAUGCUUUGAAGGGAUUGCCAAGCUCACUUUUAAUCAUGGGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAAAAAGUAGGCCUCGUGCUG----AGAUAAUUCCAGCGA-GUGCCAAGGGGCUAGUUGA--GAUAUGGCUU-C
ABQO010625947.1/912-1107     AUCUCGUGAGACAAAGGAUUCGCUCCUGAGCCCCGCCACACCUAAAAAAAA-AUGCUUUGAAGGGUUUUCCAAGCUGACUUUUAAUCAUGGGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAAAAAGUGGGCCUCGUGCUG----AGAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GAUAUGGCUU-C
AAPY01087498.1/991-1187      CUGCCUU-AGACAAAGGAUGUACUUG-GAAGCCCACCACACCUAAAGCUA---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUA-UCAUGAGAAAGAAA-UUACCCACAUG-AGUCAGCAGAAA-UGAGAAAGUAGAGCUCGUGCUGAGAAAAAUAUCUUCCGCAGCGCACAGCAGCCCAAGUUGAAGGAGAUGCCUUCC
AAQR03016744.1/77847-77655   CUUCCCU-AGACAAAGGAUGCACUCG-GAGCCCCACCACACCUAAAGCCA---CACUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAGGUAGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AADN03001533.1/193238-193046 -CUUUCUGAGACAAAGGAUCCACUCC-ACAUCCAGCCACACCUAAAGAAA---UGCUUUGAAGGAAUUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAAAAAGUAGAGCUCGUGCUGU---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GCAAUGGCUU-C
AAPE02006931.1/14355-14162   -UUACU--AGACAAAGGAUGCGCCCG-AAACCCCACCACACCUAAAGCCA---CGCUUUGGAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGGUGCUCCGAGUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AAGU03008645.1/62071-62263   CUGCCUU-AGACAAAGGAUGCGCUCC-GAGCCCCACCACACCUAAAGCCG---CGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACAUGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGC---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
AF429306.1/721-913           CUGCCUU-AGACAAAGAAUGCACUCG-GAGCCCCAACACACCUAAAGCCA---UGCUUUGAAGGAUCUGCCAAGCUCACUUUUAAUCAUGAGAAAGAAA-UUACCCACACGGAGUCAGCAGAAAAUGAGAAAGUAGAGCUCGUGCUGU---GAAUAAUUCCAGCAA-GUGCCAAGGGGCUAGUUGA--GGAAUGGCUU-C
#=GC SS_cons                 :::::::.::::::::::::::::::.:::::::::::::::::::::::...::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::...:::::::::::::::.:::::::::::::::::::..::::::::::.:
#=GC RF                      cugccuU.AGACAAaGGaugcaCUcg.GagcCCCaCCACACCUaaAgccA...uGCUUUGAAGGaucUGCCAAGCUCACUUUUAAUCauGaGaAAGAAA.UUACCCACAuGGAGuCAGCAGAAAAUGAGAAAGUaGAGCUCGUGCUGc...GAAUaaUUCCaGCaA.GuGCCaaGGGGCUAGUUGA..GgaAUGGCUU.C

AC018659.35/136389-136197    AUGAGG
AAGV020089263.1/424-616      AUGAGG
AAWR02024755.1/19270-19462   AUGAGG
AC235682.1/15852-16043       AUGAAG
AAIY01406812.1/3781-3588     AUGAGG
ABRQ01017969.1/3629-3820     AUGAGG
AAFC03093132.1/129241-129433 AUGAGG
AC125204.4/99243-99051       AUGAGG
ABRP01000338.1/6046-6238     AUGAGG
AAYZ01074763.1/3120-3311     AUGAGG
AAKN02013867.1/8936-8744     AUGAGG
ABRN01423266.1/3006-3198     ACGAGG
ABRO01249224.1/910-1103      AUGAGG
ABRR01116081.1/11788-11980   GUGAGG
AAHX01048282.1/85626-85818   AUGAGG
AAQQ01081945.1/6731-6920     AUGAGG
AAPN01014431.1/29797-29605   AUGAGG
AANN01526683.1/4045-3852     AUGAGG
ABQF01015694.1/2975-3163     AUGAGG
ABRT010183405.1/2872-3059    GUGGGG
AAFR03039563.1/286089-285893 AUGAGG
ABQO010625947.1/912-1107     AUGAGG
AAPY01087498.1/991-1187      ACGAAG
AAQR03016744.1/77847-77655   AUGAGG
AADN03001533.1/193238-193046 AUGAGG
AAPE02006931.1/14355-14162   AUGAGG
AAGU03008645.1/62071-62263   ACGAGG
AF429306.1/721-913           AUGAGA
#=GC SS_cons                 ::::::
#=GC RF                      AUGAGG
//
