# STOCKHOLM 1.0
#=GF ID RMST_3
#=GF AC RF01964
#=GF DE Rhabdomyosarcoma 2 associated transcript conserved region 3
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 55.0
#=GF NC 53.2
#=GF TC 59.3
#=GF PI NCRMS
#=GF SE Predicted; MAFFT; Eberhardt R
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.21 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 20062813
#=GF RT Rmst is a novel marker for the mouse ventral mesencephalic floor plate and
#=GF RT the anterior dorsal midline cells.
#=GF RA Uhde CW, Vives J, Jaeger I, Li M
#=GF RL PLoS One. 2010;5:e8641.
#=GF WK RMST_(gene)
#=GF SQ 16

AF429305.1/204-312         AAGGAAGGA-GAGACUGUUUCUACAGGUGUCAUACAAAAAUCAAUACUGAGCCAAGGAUUAUUGGAUCCCAUAGAACCACGGAGACUUGGUAGUGAAAUUCUUCCAAAGG
ACBE01245135.1/1255-1363   AAGGAAGGA-GAGGCUGUUUCUACAGGUGUCAUAGAAAAAUCAAUAUUGAGCCACGGAUUAUUGGAUCCCAUAGAACCAUGGAGACUUGGCAGUGAAAUUCUUCCAAAGG
AANU01209576.1/2613-2721   AAGGAAGGA-GAGACUGUUUCUACAGGUGUCAUAGAAAAAUCAAUACUGAGCCAAGGAUUAUUGGAUCCCAUAGAACCAUGGAGGCGUGGCAGUGAAAUUCUCCCAAAGG
ABRT010541375.1/4111-4219  AAGGAAGGA-GAGGCUGUUUCUACAGGUGUCAUAGGAAAGUCAAUACUGAGCCACGGAUUAUUGGAUCCUACAGAACCAUGGAGACUUGGCAGCGAAAUUCUUCCAAAGG
AAFC03093132.1/58863-58971 AAGGAAGGA-GAGGCUGUUUCUACAGGUGUCAGAGAAAAAUCGAUACUGAGCCAUGGAUUAUUGAAUCCCGUAGAACCAUGGAGGCUUGGCAGUGAAAUUCUUCCAAAGG
ABDC01155932.1/15824-15932 AAGGAAGGA-GAGGCUGUUUCUACAGGUGUCUUCAAAAAAUCGAUACUGAGCCACGGAUUAUUGGAUCCCACAGAAGCAUGGAGACUUGGCAGUGAAAUUCUUCCAAAGG
AAYZ01074743.1/3353-3461   AAGGAAGGA-GAGACUGUUUCUACAGGUGUCAUAGAAAAAUCAAUGCCAAGCCAUGGAUUAUUGGAUGCUGCAGAACCACAGAGAUGUGGCGGUGAAAUUCUUCCAAAGG
AALT01661591.1/7713-7605   AAGGAAGGA-GAGGCUGUUUCUACAGGUGUCAUUGAAAAAUCAAUACUGAGCCACAGAUUAUUGGAUCCCAUAGAACCAUGGAGGCUUGGCAGUGAAAUUCUUCUAGAGG
ABRO01032941.1/1508-1616   AAGGAAGGA-GAAGCUGUUUCUACAGGUGUCAUACAAAAAUCAAUACCGAGCUACGGAUUAUUGGAUCUCGUAGAACCAUGGAGGCUUGGCAGUGAAAUACUUCCAAAGG
AC125204.4/159690-159582   AAGGAAGGA-GAGGCUGUUUCUACAGGUGCCACAGAAAAAUCGAUGCUGAGCCUCGGAUUAUUGGAUCCCAUAGAACCGUGGAGACUUGGCAGUGAAAUUCUUCCAAAGG
ABRN01423257.1/4946-5054   AAGGAAGGA-GAGGCCAUUUCUACAGGUGUCAUAGAAGAAUCGAUAUUGAGCCAUGGAUUAUUGGAUCCCAUAGAGCCACAGAGACUUGGCAGUGAAAUUCUUCCAAAGG
AANN01292645.1/1222-1114   AAGGAGGGA-GAGGAUGUUUCUACAGGUGUCACAGAAAAAUCAAUCCCGAGCAACGGAUUAUUGGAUCUCAUAGAACCAUGGAGACUUGGCAGUGAAAUUCUUCCAGAGG
AAHX01048282.1/26038-26147 AAAGAAAGGCGAGGCUGUUUCUACAGGUGCCACAGAAAAAUCGAUGCCGAGUCACGGAUUAUUGGAUCCCACAGAACCAUGGAGACUUGGCGGUGAAAUUCUUCUAAAGG
ABRP01000330.1/3711-3813   AAGGAA-GA-GAGGCUGUUUCUACAGGUGUCAUAGAAAA--UCAUACUGAG-CACGGCUUAUUGCCUCCCAUAGAACCAUG--GACUUGGCAGUGAAAUUCUUCCAAAGG
AAQR03016745.1/21161-21053 AAGGAAGGA-GAGGCAGUUUCUACAGGUGUCUUAGAAAAAUCAAUACUAAGCCACGGAUUAUUGGAUGCCACAGAACCAUGGAGACUUGGCAGUGAAAUUCUUCCAAAGG
AAPE02006931.1/71433-71325 AAGGAAGGA-GAGGCUGUUUCUACAGGUGUCAUAGAAAAAUCAAUGCUGAGCCACGGAUUAUUGGGUCCCAUAGAACCAUGGACACAUGGCAGUGAAAUUCUUCCCAAGG
#=GC SS_cons               :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
#=GC RF                    AAGGAAGGA.GAGGCUGUUUCUACAGGUGUCAuaGAAAAAUCaAUaCuGAGCCAcGGAUUAUUGGaUCCCauAGAACCAUGGAGaCuUGGCAGUGAAAUUCUUCCAAAGG
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