# STOCKHOLM 1.0
#=GF ID RMST_2
#=GF AC RF01963
#=GF DE Rhabdomyosarcoma 2 associated transcript conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 45.0
#=GF NC 43.9
#=GF TC 45.0
#=GF PI NCRMS
#=GF SE Predicted; ClustalW; Eberhardt R
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.94 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF RN [1]
#=GF RM 20062813
#=GF RT Rmst is a novel marker for the mouse ventral mesencephalic floor plate and
#=GF RT the anterior dorsal midline cells.
#=GF RA Uhde CW, Vives J, Jaeger I, Li M
#=GF RL PLoS One. 2010;5:e8641.
#=GF WK RMST_(gene)
#=GF SQ 16

AC007351.40/28304-28169    UUCUCAGGAUGAUGGAGU-GAGUGAUGGAAUAGGUUGCCAACU-GUAGUUACUCCACUCAGCA---CAGAAUGG-CUGCGGGGAA-A-UAUAAUCAGACAUGCCCAAAGAAGUCUGCUUAGGGUGAAACAAAUACCUUUGAGGU
ABRR01116066.1/686-820     UUCUCAGACUGAUGGAGU-GAGUGACGGAGUAGGUUGCCAACU-GUAGUUGCUCCACUCAGCA---CAGAAUGG-CUGCGGGGAA---UAUAUUCAGACAUUCCCAGAGAAGUCUGCCCAGGGUGAAACAAAUACCUUUGAGGU
ABVD01062018.1/1120-1254   UUCUCAGACUGAUGGAGU-GAGUGAUGGAGUGGGUUGCCAACU-GUAAUUGUUCCACUCAGCG---CAGAAUGG-CUGUGGACAA-UAU--AUUCAGGCAUCCCUAAAGAAGUCUGCCCAGGGUGAAACAAAUACAUUUGAGGU
ABDC01155932.1/15103-15237 UUCUCAAGCUGAUGGAGU-GAGUGAUGGAGUGGGUUGCCAACG-GUAGUUACUCCACUCAGCG---CAGAAUGG-CUGCAGGGAA-UAU--AUUCAGACAUCCCCAAAGAAGUCUGCCCAGGGUGAAACAAAUACCUUUCAGGU
ABRP01000330.1/2991-3125   UUCUCAGGCUGAUGGAGU-GAGUGACGGCAUGGGUUGCCAACU-AUAGUUAUUCCGCUCAGUA---CAGAAUGC-CUGUGGGGAG---UAGAAUCAGGCAUGCCCAAAACAGUCUUCCCAGGGCAAAACAAAUACCUUUGAGGU
AAWR02024754.1/38845-38977 UUCUCAUGCUGAUGGAGU-GAGUGAC--AGUGGGGUGCGAACU-GUAGUUACUCGACUCAGCU---CAGAAUGG-CUGCGGGGAA-CGU--AUUCAGACAUACCCAAGGAAGUCUGCCCAGGGUGAAACAAACACCGUUGAGGU
AAPY01590416.1/2399-2533   GUCUCAGGCUGAUGGAGU-GAGUGAUGGAGUGGGUUGCCAACU-GUCAUUACUCCACUUGGUG---CAGAAUAA-CUGUCAGAAA-UCU--AUUCACAUAUGCCCAAAGAAGUCUGCCCAGGGUGAAACAAAUGCCUUUGAGGU
ABRN01423257.1/4219-4353   UUCUCAGGCUGAUGGAGU-GAGUGAUGGAGUGGGUUGCCAACC-GUAGUUACUCCACUCAGUG---CAGAAUGG-CUGCAGGGAA-UAU--AUUGAGAUACGCCCAAAAAACUGUGCCCAGAGUGAAACAAGUACCUUUGAGGU
ABRQ01017953.1/1179-1313   UUCUCGGGCUUCUGGAGU-GAGUGAUGGUGUGGGUUGCCGGCU-GUAGUUACUCCACUCAGCG---CAGAGUGG-CUGCGGGGAA-UGU--AUUCAGACAUCCCCCAAGACGUCUGCCCUGGGUGAGACAGAUGCCUCUGAGGU
AAFC03041894.1/39005-38865 UUUGCAGCCUCAUGGAGC-GAGUGACGGAGUGGGUUGCCAACUUGUAGUGACUCCACUCAGCAACGCAGAAUGG-CUGCGGGAAA-UGUGUAUUCAGAUAAGCCCAAAGAAGUCUGCCCAGGGUGAAACAAGUACCUUUGAAGU
AALT01661591.1/8761-8627   UUCUCAGAUCGGUGAGAGUGAAUGACG-AGUGAGUUGUCAAUG-GUAGUUACUUCGCUCAGCG---CAGAAUGA-CUGCAGGGAA-UAU--AUUCUGACAUACCCAAAGAAGUCUGCCCAGGGUGAAACAAUUACCUUUGGGGU
AAPE02006931.1/72166-72033 UUCUCAGGCUGAUGGAGU--GGUGACGGAGUGGAUUGACAACU-GUAGUUUCUCCACUCAGUG---CAGAAUGG-CUGCAGGGAA---CAAAUGCAGACAUGUCCAGAGAAGUCUGCCCAGGGUGAAACAAAUAUCUUUGAGGU
AAQR03016745.1/21876-21742 UUCUCAAGCUCAAGGAGU-GAGUGAUGGAGUCAGUUGCCAGCU-GUAGUUACGCUGCUCCAUG---CAGAAUGG-CUGCAGGGAA-UAU--AUUCAGACAUGCCCCAAGAAGUCUGCUCAGGGUGACACAAAUACCUUUGAGGU
AAGW02034243.1/72428-72293 UUCUCGGGCUGAUGCUGUUAAGUGAUGGAGUGGGUUGCCAACU-GUAGUUGCUGCACUCAGCG---CCUAAUGG-CUCUGGGGAA---CAUACUCAGACAUGCCCAGAGAAGUCUGCCUGGGGUGAAACAAGUACCCUUGAGGU
AAGU03008644.1/55026-55160 UUCUCAGGCUUAUGGAGA-GAGUGAUGGUGUAGGUUGCCAACC-GUAGUUACUCCAUAGAGCG---CAGAGUGG-CUGCGGGGAA-UAU--ACUCAGGCAUCUCCCAAGAAGUCUGCCCAGGGUGAAACAAAUACCUUUGAGGU
AF429305.1/57-193          UUCUCAGGAUGAUGGAGU-GAGUGAUGGAAUAGGUUGCCAACG-GUAGUUACUCCACUCAGCA---CAGAAUGGUCUGCGGGGAAAUAU--AAUCAGACAUGCCCAAAGAAGUCUGCUUAGGGUGAAACAAAUACCUUUGAGGU
#=GC SS_cons               ::::::::::::::::::.::::::::::::::::::::::::.:::::::::::::::::::...::::::::.::::::::::.:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::
#=GC RF                    UUCUCAGGcUgaUGGaGu.GAGUGAuGGaGUgGGUUGCCAACu.GUAGUUaCUcCaCUCaGcg...CAGAAUGG.CUGcgGGGAA.uaU..AuUCAGaCAUgCCCaaAGAAGUCUGCCCaGGGUGAaACAAaUACCUUUGAGGU
//
