INFERNAL1/a [1.1.5 | Sep 2023] NAME RMST_1 ACC RF01962 DESC Rhabdomyosarcoma 2 associated transcript conserved region 1 STATES 187 NODES 63 CLEN 61 W 136 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 23:21:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01962/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14 EFFN 4.638184 CKSUM 4272236870 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 41.40 NC 37.90 EFP7GF -11.0869 0.71891 ECMLC 0.69324 -9.21665 0.05755 1600000 743671 0.001614 ECMGC 0.40146 -19.80367 -5.63003 1600000 118369 0.003379 ECMLI 0.61880 -8.57114 0.86732 1600000 412747 0.002907 ECMGI 0.42268 -13.44064 -0.92308 1600000 79406 0.005037 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 136 217 -7.771 -7.978 -0.030 -6.392 IL 1 1 2 1 4 1 22 139 220 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 138 219 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 22 137 218 -6.096 -0.043 -6.096 -0.949 1.399 -1.946 -0.771 D 4 2 3 5 3 0 17 134 214 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 23 143 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 21 135 216 -6.096 -0.043 -6.096 1.058 -1.865 0.370 -1.513 D 7 5 3 8 3 0 16 132 213 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 22 142 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 20 134 215 -6.096 -0.043 -6.096 -2.443 1.628 -2.700 -0.805 D 10 8 3 11 3 0 15 131 212 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 22 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 19 133 213 -6.096 -0.043 -6.096 -0.592 -1.178 -0.675 1.182 D 13 11 3 14 3 0 15 130 210 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 21 140 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 19 132 212 -6.096 -0.043 -6.096 -2.528 -3.587 1.865 -3.315 D 16 14 3 17 3 0 14 128 209 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 20 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 18 130 211 -6.096 -0.043 -6.096 1.651 -2.492 -1.113 -2.189 D 19 17 3 20 3 0 13 127 207 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 19 137 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 17 129 209 -6.096 -0.043 -6.096 -0.913 -1.259 1.450 -1.643 D 22 20 3 23 3 0 12 126 206 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 19 136 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 16 128 208 -6.096 -0.043 -6.096 -2.055 -0.731 -2.271 1.561 D 25 23 3 26 3 0 12 125 205 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 18 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 16 126 206 -6.096 -0.043 -6.096 1.546 -0.982 -2.027 -1.605 D 28 26 3 29 3 0 11 123 203 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 17 133 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 15 125 205 -6.096 -0.043 -6.096 -1.189 -1.732 -2.152 1.602 D 31 29 3 32 3 0 10 122 202 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 16 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 14 124 204 -6.096 -0.043 -6.096 -2.982 1.828 -3.231 -2.211 D 34 32 3 35 3 0 10 121 200 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 15 131 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 13 122 202 -6.096 -0.043 -6.096 -2.051 -0.721 -2.267 1.558 D 37 35 3 38 3 0 9 119 199 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 15 130 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 12 121 201 -6.096 -0.043 -6.096 -1.883 -0.233 -2.089 1.402 D 40 38 3 41 3 0 8 118 197 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 14 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 11 120 199 -6.096 -0.043 -6.096 -2.982 1.828 -3.231 -2.211 D 43 41 3 44 3 0 8 117 196 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 13 127 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 10 119 198 -6.096 -0.043 -6.096 1.183 -1.278 -0.661 -0.544 D 46 44 3 47 3 0 7 116 195 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 12 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 10 117 196 -6.096 -0.120 -3.944 -0.997 -2.793 1.666 -2.468 D 49 47 3 50 3 0 7 115 194 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 11 124 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 9 116 195 -6.021 -0.045 -6.021 -1.107 -2.747 1.678 -2.427 D 52 50 3 53 3 0 6 114 193 -12.654 -0.536 -1.688 IL 53 53 3 53 3 1 10 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 8 115 193 -6.096 -0.043 -6.096 1.891 -3.547 -3.206 -3.347 D 55 53 3 56 3 0 4 112 190 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 10 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 7 113 192 -6.096 -0.043 -6.096 1.630 -2.441 -1.023 -2.134 D 58 56 3 59 3 0 4 110 189 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 9 121 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 6 112 190 -6.096 -0.043 -6.096 1.891 -3.547 -3.206 -3.347 D 61 59 3 62 3 0 3 109 188 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 8 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 5 111 189 -6.096 -0.287 -2.593 1.536 -1.842 -1.978 -0.819 D 64 62 3 65 3 0 3 108 187 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 8 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 5 110 188 -5.859 -0.051 -5.859 1.443 -0.888 -1.624 -1.266 D 67 65 3 68 3 0 2 108 186 -13.703 -0.235 -2.737 IL 68 68 3 68 3 1 7 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 5 108 186 -3.163 -0.195 -6.096 -0.411 -0.709 -1.344 1.165 D 70 68 3 71 3 0 0 105 183 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 5 108 186 -5.108 -0.043 -12.752 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - - - ML 72 71 3 74 3 1 4 107 185 -6.096 -0.043 -6.096 -2.528 -3.587 1.865 -3.315 D 73 71 3 74 3 0 0 104 182 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 6 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 75 74 3 77 3 1 4 106 184 -6.096 -0.043 -6.096 -0.541 -2.556 1.550 -2.217 D 76 74 3 77 3 0 0 103 180 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 5 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 78 77 3 80 3 1 3 104 182 -6.096 -0.043 -6.096 -1.687 -2.419 1.634 -1.328 D 79 77 3 80 3 0 0 101 179 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 5 112 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 1 3 103 181 -6.096 -0.043 -6.096 -0.710 -0.688 -1.482 1.269 D 82 80 3 83 3 0 0 100 177 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 4 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - U - - - ML 84 83 3 86 3 1 2 102 179 -6.096 -0.043 -6.096 -2.745 -2.232 -2.939 1.810 D 85 83 3 86 3 0 0 98 176 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 4 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 87 86 3 89 3 1 2 100 177 -6.096 -0.043 -6.096 -2.426 1.618 -2.682 -0.765 D 88 86 3 89 3 0 0 97 174 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 3 108 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 90 89 3 92 3 1 2 99 176 -6.096 -0.043 -6.096 -2.982 1.828 -3.231 -2.211 D 91 89 3 92 3 0 0 96 172 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 3 107 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - a - - - ML 93 92 3 95 3 1 1 98 174 -6.096 -0.043 -6.096 0.952 -0.618 -0.613 -0.397 D 94 92 3 95 3 0 0 94 171 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 2 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - U - - - ML 96 95 3 98 3 1 1 96 173 -6.096 -0.043 -6.096 -0.537 -0.753 -0.610 1.044 D 97 95 3 98 3 0 0 93 169 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 2 104 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - a - - - ML 99 98 3 101 3 1 1 95 171 -6.096 -0.043 -6.096 0.594 -0.444 0.213 -0.744 D 100 98 3 101 3 0 0 91 168 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 2 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - A - - - ML 102 101 3 104 3 1 1 93 170 -6.096 -0.043 -6.096 1.891 -3.547 -3.206 -3.347 D 103 101 3 104 3 0 0 90 166 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 1 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - G - - - ML 105 104 3 107 3 1 1 92 168 -6.096 -0.043 -6.096 -2.528 -3.587 1.865 -3.315 D 106 104 3 107 3 0 0 89 165 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 100 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 108 107 3 110 3 1 1 91 167 -6.096 -0.043 -6.096 1.891 -3.547 -3.206 -3.347 D 109 107 3 110 3 0 0 87 163 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 111 110 3 113 3 1 1 89 165 -6.096 -0.043 -6.096 1.565 -1.899 -2.036 -0.918 D 112 110 3 113 3 0 0 86 161 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - G - - - ML 114 113 3 116 3 1 1 88 163 -6.096 -0.043 -6.096 -2.528 -3.587 1.865 -3.315 D 115 113 3 116 3 0 0 84 160 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 96 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 117 116 3 119 3 1 1 86 162 -6.096 -0.043 -6.096 -0.912 -1.642 -1.989 1.534 D 118 116 3 119 3 0 0 83 158 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - - - ML 120 119 3 122 3 1 1 85 160 -6.096 -0.043 -6.096 -2.528 -3.587 1.865 -3.315 D 121 119 3 122 3 0 0 81 156 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - g - - - ML 123 122 3 125 3 1 1 83 158 -6.096 -0.043 -6.096 0.553 -1.963 0.962 -1.607 D 124 122 3 125 3 0 0 80 155 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 92 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 126 125 3 128 3 1 1 82 157 -6.096 -0.043 -6.096 -2.982 1.828 -3.231 -2.211 D 127 125 3 128 3 0 0 78 153 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - A - - - ML 129 128 3 131 3 1 1 80 155 -6.096 -0.043 -6.096 1.141 -1.241 -0.606 -0.486 D 130 128 3 131 3 0 0 77 151 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 89 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - U - - - ML 132 131 3 134 3 1 1 79 153 -6.096 -0.043 -6.096 -0.831 -0.655 -1.538 1.298 D 133 131 3 134 3 0 0 75 149 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - C - - - ML 135 134 3 137 3 1 1 77 151 -6.096 -0.043 -6.096 -2.982 1.828 -3.231 -2.211 D 136 134 3 137 3 0 0 74 148 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - C - - - ML 138 137 3 140 3 1 1 76 150 -6.096 -0.043 -6.096 -2.552 1.683 -2.819 -1.067 D 139 137 3 140 3 0 0 72 146 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 141 140 3 143 3 1 1 74 148 -6.096 -0.043 -6.096 -2.745 -2.232 -2.939 1.810 D 142 140 3 143 3 0 0 71 144 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - C - - - ML 144 143 3 146 3 1 1 73 146 -6.096 -0.043 -6.096 -2.982 1.828 -3.231 -2.211 D 145 143 3 146 3 0 0 69 142 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 82 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - C - - - ML 147 146 3 149 3 1 1 71 144 -6.096 -0.043 -6.096 -2.482 1.648 -2.743 -0.896 D 148 146 3 149 3 0 0 67 140 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - U - - - ML 150 149 3 152 3 1 1 69 142 -6.096 -0.043 -6.096 -2.745 -2.232 -2.939 1.810 D 151 149 3 152 3 0 0 66 138 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 79 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - C - - - ML 153 152 3 155 3 1 1 68 140 -6.096 -0.043 -6.096 -1.752 1.409 -1.293 -0.645 D 154 152 3 155 3 0 0 64 136 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - G - - - ML 156 155 3 158 3 1 1 66 138 -6.096 -0.043 -6.096 -1.098 -2.844 1.687 -2.523 D 157 155 3 158 3 0 0 62 134 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - A - - - ML 159 158 3 161 3 1 1 64 136 -6.096 -0.043 -6.096 1.891 -3.547 -3.206 -3.347 D 160 158 3 161 3 0 0 60 132 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - A - - - ML 162 161 3 164 3 1 1 62 134 -6.096 -0.043 -6.096 1.679 -2.568 -1.247 -2.272 D 163 161 3 164 3 0 0 58 129 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - u - - - ML 165 164 3 167 3 1 1 61 132 -6.096 -0.043 -6.096 -0.294 -0.077 -1.184 0.845 D 166 164 3 167 3 0 0 56 127 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - u - - - ML 168 167 3 170 3 1 1 59 129 -6.096 -0.043 -6.096 -1.022 -0.737 -0.081 0.972 D 169 167 3 170 3 0 0 54 124 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 171 170 3 173 3 1 1 56 127 -6.096 -0.043 -6.096 -1.176 -2.884 1.702 -2.566 D 172 170 3 173 3 0 0 51 121 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 67 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - A - - - ML 174 173 3 176 3 1 1 54 124 -6.096 -0.043 -6.096 1.533 -1.836 -1.972 -0.810 D 175 173 3 176 3 0 0 48 118 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 66 136 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - A - - - ML 177 176 3 179 3 1 1 51 121 -6.096 -0.043 -6.096 1.891 -3.547 -3.206 -3.347 D 178 176 3 179 3 0 0 43 113 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - A - - - ML 180 179 3 182 3 1 1 47 116 -6.096 -0.043 -6.096 1.891 -3.547 -3.206 -3.347 D 181 179 3 182 3 0 0 32 101 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - G - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -1.033 -2.811 1.674 -2.488 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RMST_1 ACC RF01962 DESC Rhabdomyosarcoma 2 associated transcript conserved region 1 LENG 61 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sun Jul 7 23:21:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01962/CM NSEQ 14 EFFN 4.638184 CKSUM 4272236870 STATS LOCAL MSV -7.8086 0.71891 STATS LOCAL VITERBI -8.6974 0.71891 STATS LOCAL FORWARD -3.6307 0.71891 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19696 1.48623 1.40182 1.48937 1.38629 1.38629 1.38629 1.38629 0.01698 5.38653 4.40136 0.39730 1.11515 0.00000 * 1 2.04386 0.41684 2.73514 1.92098 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 2 0.65285 2.67911 1.12951 2.43470 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 3 3.07959 0.25820 3.25797 1.94413 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 4 1.79668 2.20270 1.85423 0.56727 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 5 3.13855 3.87267 0.09351 3.68412 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 6 0.24182 3.11367 2.15802 2.90389 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 7 2.01929 2.25927 0.38157 2.52529 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 8 2.81070 1.89331 2.96068 0.30451 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 9 0.31484 2.06715 2.79120 2.49862 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 10 2.21022 2.58685 2.87792 0.27600 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 11 3.45334 0.11907 3.62590 2.91891 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 12 2.80798 1.88623 2.95781 0.30639 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 13 2.69148 1.54811 2.83444 0.41428 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 14 3.45334 0.11907 3.62590 2.91891 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 15 0.56664 2.27223 1.84479 1.76356 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 16 2.07718 3.32204 0.23136 3.09694 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08296 4.22511 2.73354 1.46634 0.26236 1.09861 0.40547 17 2.15362 3.29051 0.22286 3.06889 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03128 4.17343 4.17343 1.46634 0.26236 0.37159 1.17001 18 0.07587 3.84464 3.60834 3.70625 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 19 0.25620 3.07833 2.09540 2.86551 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 20 0.07587 3.84464 3.60834 3.70625 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 21 0.32150 2.66273 2.75705 1.95401 - A - - : 1.38629 1.38629 1.38629 1.38629 0.19888 4.22511 1.79743 1.46634 0.26236 1.09861 0.40547 22 0.38588 2.00189 2.51174 2.26390 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03506 4.06129 4.06129 1.46634 0.26236 0.16253 1.89706 23 1.67092 1.87750 2.31809 0.57894 - U - - : 1.38629 1.38629 1.38629 1.38629 0.13499 2.19234 4.22511 0.02943 3.54026 1.09861 0.40547 24 3.13855 3.87267 0.09351 3.68412 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 25 1.76122 3.15805 0.31213 2.92300 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 26 2.55533 3.06275 0.25358 2.30707 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 27 1.87829 1.86337 2.41347 0.50667 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 28 3.28891 2.93352 3.42372 0.13136 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 29 3.06775 0.26472 3.24505 1.91675 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 30 3.45334 0.11907 3.62590 2.91891 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 31 0.72621 1.81470 1.81104 1.66131 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 32 1.75823 1.90857 1.80943 0.66241 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 33 0.97491 1.69410 1.23892 1.90172 - a - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 34 0.07587 3.84464 3.60834 3.70625 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 35 3.13855 3.87267 0.09351 3.68412 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 36 0.07587 3.84464 3.60834 3.70625 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 37 0.30149 2.70239 2.79787 2.02270 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 38 3.13855 3.87267 0.09351 3.68412 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 39 2.01873 2.52455 2.76510 0.32281 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 40 3.13855 3.87267 0.09351 3.68412 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 41 1.00323 2.74719 0.71921 2.50026 - g - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 42 3.45334 0.11907 3.62590 2.91891 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 43 0.59520 2.24670 1.80623 1.72301 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 44 1.96219 1.84057 2.45235 0.48673 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 45 3.45334 0.11907 3.62590 2.91891 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 46 3.15530 0.21983 3.34028 2.12616 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 47 3.28891 2.93352 3.42372 0.13136 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 48 3.45334 0.11907 3.62590 2.91891 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 49 3.10651 0.24391 3.28734 2.00745 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 50 3.28891 2.93352 3.42372 0.13136 - U - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 51 2.60094 0.40964 2.28228 1.83349 - C - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 52 2.14767 3.35791 0.21697 3.13544 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 53 0.07587 3.84464 3.60834 3.70625 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 54 0.22225 3.16603 2.25054 2.96088 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 55 1.59017 1.43961 2.20679 0.80065 - u - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 56 2.09492 1.89688 1.44237 0.71229 - u - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 57 2.20127 3.38518 0.20673 3.16478 - G - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 58 0.32347 2.65904 2.75320 1.94751 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 59 0.07587 3.84464 3.60834 3.70625 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 60 0.07587 3.84464 3.60834 3.70625 - A - - : 1.38629 1.38629 1.38629 1.38629 0.02968 4.22511 4.22511 1.46634 0.26236 1.09861 0.40547 61 2.10233 3.33484 0.22610 3.11067 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //