INFERNAL1/a [1.1.5 | Sep 2023] NAME SOX2OT_exon4 ACC RF01954 DESC SOX2 overlapping transcript exon 4 STATES 331 NODES 111 CLEN 109 W 204 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 20:09:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01954/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 2.329102 CKSUM 352471722 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.30 NC 39.80 EFP7GF -6.1244 0.71820 ECMLC 0.71003 -11.26532 -2.42607 1600000 638072 0.001881 ECMGC 0.41788 -17.93411 -8.27104 1600000 22686 0.017632 ECMLI 0.52035 -11.08596 0.11981 1600000 408798 0.002935 ECMGI 0.47360 -6.89711 1.51250 1600000 21466 0.018634 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 204 294 -7.103 -7.310 -0.048 -5.724 IL 1 1 2 1 4 17 55 206 296 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 17 55 206 295 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 16 54 204 294 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 4 2 3 5 3 12 50 201 290 -11.551 -1.585 -0.585 IL 5 5 3 5 3 18 56 210 300 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 16 53 203 292 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 7 5 3 8 3 12 49 200 289 -11.551 -1.585 -0.585 IL 8 8 3 8 3 17 55 209 299 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 15 52 202 291 -5.501 -0.065 -5.501 -1.339 1.275 -1.525 -0.255 D 10 8 3 11 3 11 48 198 287 -11.551 -1.585 -0.585 IL 11 11 3 11 3 17 54 207 298 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 14 52 200 290 -5.501 -0.182 -3.378 -1.619 -2.322 1.692 -2.036 D 13 11 3 14 3 11 47 197 286 -11.551 -1.585 -0.585 IL 14 14 3 14 3 17 54 206 296 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 15 52 199 288 -5.390 -0.071 -5.390 -1.443 -2.076 1.635 -1.787 D 16 14 3 17 3 10 47 195 283 -12.634 -2.669 -0.247 IL 17 17 3 17 3 17 54 205 295 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 15 51 198 287 -5.390 -0.071 -5.390 -1.443 -2.076 1.635 -1.787 D 19 17 3 20 3 10 46 194 282 -12.634 -2.669 -0.247 IL 20 20 3 20 3 16 53 204 294 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 14 50 197 286 -5.390 -0.071 -5.390 -1.336 -1.065 -1.476 1.468 D 22 20 3 23 3 10 46 193 281 -12.634 -2.669 -0.247 IL 23 23 3 23 3 15 52 203 292 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - c - - - ML 24 23 3 26 3 13 49 196 284 -5.390 -0.071 -5.390 -0.761 0.833 -0.462 -0.148 D 25 23 3 26 3 9 46 192 280 -12.634 -2.669 -0.247 IL 26 26 3 26 3 15 51 201 291 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 13 49 194 283 -5.390 -0.071 -5.390 -1.548 1.511 -1.720 -0.985 D 28 26 3 29 3 9 45 191 280 -12.634 -2.669 -0.247 IL 29 29 3 29 3 14 50 200 289 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 12 48 193 281 -5.390 -0.071 -5.390 1.066 -0.925 -0.859 -0.272 D 31 29 3 32 3 9 45 191 279 -12.634 -0.545 -1.669 IL 32 32 3 32 3 13 49 199 288 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 11 47 192 280 -5.501 -0.182 -3.378 1.146 -1.277 -0.229 -0.942 D 34 32 3 35 3 8 43 189 277 -11.551 -1.585 -0.585 IL 35 35 3 35 3 13 49 198 287 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 11 47 191 279 -3.880 -0.139 -5.390 -1.443 -2.076 1.635 -1.787 D 37 35 3 38 3 7 42 187 275 -12.634 -2.669 -0.247 IL 38 38 3 38 3 12 47 191 279 -3.399 -0.144 -11.043 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - C - - - ML 39 38 3 41 3 11 46 190 278 -5.390 -0.071 -5.390 -1.548 1.511 -1.720 -0.985 D 40 38 3 41 3 7 42 186 274 -12.634 -2.669 -0.247 IL 41 41 3 41 3 12 48 195 284 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - C - - - ML 42 41 3 44 3 10 45 188 276 -5.390 -0.071 -5.390 -1.014 1.128 -0.552 -0.652 D 43 41 3 44 3 7 42 186 274 -12.634 -0.545 -1.669 IL 44 44 3 44 3 11 47 194 283 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - U - - - ML 45 44 3 47 3 9 44 187 275 -5.501 -0.065 -5.501 -1.534 -1.230 -1.686 1.545 D 46 44 3 47 3 5 40 184 271 -11.551 -1.585 -0.585 IL 47 47 3 47 3 11 46 193 282 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - G - - - ML 48 47 3 50 3 9 43 186 273 -5.501 -0.065 -5.501 -0.716 -1.816 1.460 -1.488 D 49 47 3 50 3 5 39 182 270 -11.551 -1.585 -0.585 IL 50 50 3 50 3 10 45 192 280 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - U - - - ML 51 50 3 53 3 8 42 184 272 -5.501 -0.065 -5.501 -1.534 -1.230 -1.686 1.545 D 52 50 3 53 3 4 38 181 269 -11.551 -1.585 -0.585 IL 53 53 3 53 3 10 44 190 279 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - A - - - ML 54 53 3 56 3 8 42 183 271 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 55 53 3 56 3 4 37 180 267 -11.551 -1.585 -0.585 IL 56 56 3 56 3 9 43 189 277 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - G - - - ML 57 56 3 59 3 7 41 182 269 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 58 56 3 59 3 3 37 179 266 -11.551 -1.585 -0.585 IL 59 59 3 59 3 9 43 188 276 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - C - - - ML 60 59 3 62 3 7 40 180 268 -5.501 -0.065 -5.501 -1.396 1.332 -1.585 -0.380 D 61 59 3 62 3 3 36 177 264 -11.551 -1.585 -0.585 IL 62 62 3 62 3 8 42 186 275 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - C - - - ML 63 62 3 65 3 6 39 179 266 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 64 62 3 65 3 2 35 176 263 -11.551 -1.585 -0.585 IL 65 65 3 65 3 8 41 185 273 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - C - - - ML 66 65 3 68 3 6 39 178 265 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 67 65 3 68 3 2 34 175 262 -11.551 -1.585 -0.585 IL 68 68 3 68 3 7 40 184 272 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - C - - - ML 69 68 3 71 3 6 38 177 264 -5.501 -0.065 -5.501 -0.659 1.275 -1.397 -0.818 D 70 68 3 71 3 2 33 173 260 -11.551 -1.585 -0.585 IL 71 71 3 71 3 7 40 183 270 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 72 71 3 74 3 5 37 175 262 -5.501 -0.065 -5.501 0.970 -0.212 -0.926 -0.617 D 73 71 3 74 3 1 33 172 259 -11.551 -1.585 -0.585 IL 74 74 3 74 3 6 39 181 269 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - A - - - ML 75 74 3 77 3 5 36 174 261 -5.501 -0.065 -5.501 1.289 -1.392 -0.517 -1.070 D 76 74 3 77 3 1 32 171 257 -11.551 -1.585 -0.585 IL 77 77 3 77 3 6 38 180 267 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - a - - - ML 78 77 3 80 3 4 35 173 259 -5.501 -0.065 -5.501 0.587 -0.737 -0.284 0.107 D 79 77 3 80 3 1 31 170 256 -11.551 -1.585 -0.585 IL 80 80 3 80 3 6 37 179 266 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 81 80 3 83 3 4 35 171 258 -5.501 -0.065 -5.501 -1.534 -1.230 -1.686 1.545 D 82 80 3 83 3 0 30 168 254 -11.551 -1.585 -0.585 IL 83 83 3 83 3 5 36 177 265 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 3 34 170 256 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 85 83 3 86 3 0 30 167 253 -11.551 -1.585 -0.585 IL 86 86 3 86 3 5 36 176 263 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - G - - - ML 87 86 3 89 3 3 33 169 255 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 88 86 3 89 3 0 29 166 252 -11.551 -1.585 -0.585 IL 89 89 3 89 3 4 35 175 262 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - G - - - ML 90 89 3 92 3 3 32 167 253 -3.991 -0.128 -5.501 -1.619 -2.322 1.692 -2.036 D 91 89 3 92 3 0 28 165 250 -11.551 -1.585 -0.585 IL 92 92 3 92 3 3 33 168 254 -3.399 -0.144 -11.043 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - A - - - ML 93 92 3 95 3 2 32 166 252 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 94 92 3 95 3 0 27 163 249 -11.551 -1.585 -0.585 IL 95 95 3 95 3 4 33 173 259 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - U - - - ML 96 95 3 98 3 2 31 165 251 -5.501 -0.065 -5.501 -1.100 -0.247 -1.268 1.186 D 97 95 3 98 3 0 26 162 248 -11.551 -1.585 -0.585 IL 98 98 3 98 3 3 33 171 258 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - A - - - ML 99 98 3 101 3 2 30 164 250 -5.501 -0.065 -5.501 1.289 -1.392 -0.517 -1.070 D 100 98 3 101 3 0 26 161 246 -11.551 -1.585 -0.585 IL 101 101 3 101 3 3 32 170 256 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - A - - - ML 102 101 3 104 3 2 29 163 248 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 103 101 3 104 3 0 25 159 245 -11.551 -1.585 -0.585 IL 104 104 3 104 3 3 31 169 255 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - U - - - ML 105 104 3 107 3 1 29 161 247 -5.501 -0.065 -5.501 -1.004 -0.957 -0.636 1.228 D 106 104 3 107 3 0 24 158 243 -11.551 -1.585 -0.585 IL 107 107 3 107 3 2 30 167 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - C - - - ML 108 107 3 110 3 1 28 160 245 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 109 107 3 110 3 0 23 157 242 -11.551 -1.585 -0.585 IL 110 110 3 110 3 2 30 166 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 111 110 3 113 3 1 27 159 244 -5.501 -0.065 -5.501 -1.534 -1.230 -1.686 1.545 D 112 110 3 113 3 0 23 155 240 -11.551 -1.585 -0.585 IL 113 113 3 113 3 2 29 165 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - c - - - ML 114 113 3 116 3 1 26 157 242 -5.501 -0.065 -5.501 -0.378 0.682 -0.462 -0.152 D 115 113 3 116 3 0 22 154 239 -11.551 -1.585 -0.585 IL 116 116 3 116 3 2 28 163 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - U - - - ML 117 116 3 119 3 1 26 156 241 -5.501 -0.065 -5.501 -1.534 -1.230 -1.686 1.545 D 118 116 3 119 3 0 21 153 237 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 27 162 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - G - - - ML 120 119 3 122 3 1 25 155 239 -5.501 -0.065 -5.501 -1.025 -0.909 1.333 -1.131 D 121 119 3 122 3 0 20 151 236 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 27 161 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - C - - - ML 123 122 3 125 3 1 24 153 238 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 124 122 3 125 3 0 20 150 234 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 26 160 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 126 125 3 128 3 1 23 152 236 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 127 125 3 128 3 0 19 149 233 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 25 158 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - G - - - ML 129 128 3 131 3 1 23 151 235 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 130 128 3 131 3 0 18 147 232 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 24 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - C - - - ML 132 131 3 134 3 1 22 149 233 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 133 131 3 134 3 0 18 146 230 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 24 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - - - ML 135 134 3 137 3 1 21 148 232 -3.991 -0.128 -5.501 -1.100 -0.247 -1.268 1.186 D 136 134 3 137 3 0 17 145 229 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 22 148 232 -3.399 -0.144 -11.043 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - G - - - ML 138 137 3 140 3 1 20 147 231 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 139 137 3 140 3 0 16 144 227 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 22 153 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - a - - - ML 141 140 3 143 3 1 20 146 229 -5.501 -0.065 -5.501 0.715 -1.168 0.427 -0.814 D 142 140 3 143 3 0 15 142 226 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 21 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - U - - - ML 144 143 3 146 3 1 19 144 228 -5.501 -0.065 -5.501 -1.534 -1.230 -1.686 1.545 D 145 143 3 146 3 0 15 141 224 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 21 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - a - - - ML 147 146 3 149 3 1 18 143 226 -5.501 -0.065 -5.501 0.784 -0.304 -0.753 -0.193 D 148 146 3 149 3 0 14 140 223 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 20 149 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 18 142 225 -5.501 -0.065 -5.501 1.146 -1.277 -0.229 -0.942 D 151 149 3 152 3 0 13 138 221 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 19 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - C - - - ML 153 152 3 155 3 1 17 140 223 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 154 152 3 155 3 0 13 137 220 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 18 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - A - - - ML 156 155 3 158 3 1 16 139 222 -5.501 -0.065 -5.501 1.333 -1.438 -0.619 -1.121 D 157 155 3 158 3 0 12 136 218 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 18 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - A - - - ML 159 158 3 161 3 1 15 138 220 -5.501 -0.065 -5.501 1.164 -0.570 -1.023 -0.753 D 160 158 3 161 3 0 11 134 217 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 17 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - G - - - ML 162 161 3 164 3 1 14 136 219 -5.501 -0.151 -3.690 -1.619 -2.322 1.692 -2.036 D 163 161 3 164 3 0 11 133 216 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 17 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - C - - - ML 165 164 3 167 3 1 14 135 217 -3.295 -0.193 -5.419 -1.605 1.532 -1.781 -1.033 D 166 164 3 167 3 0 10 132 214 -12.428 -2.462 -0.289 IL 167 167 3 167 3 1 15 136 219 -0.972 -1.029 -12.768 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - a - - - ML 168 167 3 170 3 1 13 134 216 -5.419 -0.069 -5.419 0.524 -0.088 -0.261 -0.347 D 169 167 3 170 3 0 10 131 214 -12.428 -0.651 -1.462 IL 170 170 3 170 3 1 15 140 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - A - - - ML 171 170 3 173 3 1 13 132 215 -5.501 -0.065 -5.501 1.010 -1.208 0.005 -0.864 D 172 170 3 173 3 0 8 129 211 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 14 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - A - - - ML 174 173 3 176 3 1 12 131 213 -5.501 -0.065 -5.501 1.127 -0.497 -0.999 -0.719 D 175 173 3 176 3 0 8 128 210 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 14 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - A - - - ML 177 176 3 179 3 1 12 130 212 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 178 176 3 179 3 0 7 126 208 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 13 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - G - - - ML 180 179 3 182 3 1 11 128 210 -2.588 -0.301 -5.501 -1.619 -2.322 1.692 -2.036 D 181 179 3 182 3 0 6 125 207 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 12 129 211 -1.233 -0.800 -13.486 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - A - - - ML 183 182 3 185 3 1 10 127 209 -5.501 -0.065 -5.501 1.163 -0.568 -1.023 -0.752 D 184 182 3 185 3 0 6 124 205 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 12 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - G - - - ML 186 185 3 188 3 1 10 125 207 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 187 185 3 188 3 0 5 122 204 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 11 132 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 70 - A - - - ML 189 188 3 191 3 1 9 124 206 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 190 188 3 191 3 0 4 121 202 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 11 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 71 - A - - - ML 192 191 3 194 3 1 8 123 204 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 193 191 3 194 3 0 4 119 200 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 72 - G - - - ML 195 194 3 197 3 1 8 121 202 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 196 194 3 197 3 0 3 118 199 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 9 128 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 73 - C - - - ML 198 197 3 200 3 1 7 120 201 -3.378 -0.182 -5.501 -1.771 1.588 -1.959 -1.173 D 199 197 3 200 3 0 3 117 198 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 8 120 201 -4.177 -0.082 -11.821 0.000 0.000 0.000 0.000 [ MATL 67 ] 75 - C - - - ML 201 200 3 203 3 1 7 119 200 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 202 200 3 203 3 0 2 115 196 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 8 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - A - - - ML 204 203 3 206 3 1 6 117 198 -5.501 -0.065 -5.501 1.056 -0.963 -0.936 -0.176 D 205 203 3 206 3 0 2 114 194 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 8 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - G - - - ML 207 206 3 209 3 1 6 116 197 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 208 206 3 209 3 0 1 113 193 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - G - - - ML 210 209 3 212 3 1 5 115 195 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 211 209 3 212 3 0 1 111 191 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 7 121 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - C - - - ML 213 212 3 215 3 1 5 113 193 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 214 212 3 215 3 0 0 110 190 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 6 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - a - - - ML 216 215 3 218 3 1 4 112 192 -5.501 -0.065 -5.501 0.700 -1.169 0.446 -0.815 D 217 215 3 218 3 0 0 108 188 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 6 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 81 - a - - - ML 219 218 3 221 3 1 4 110 190 -5.501 -0.065 -5.501 0.554 -0.333 -0.282 -0.127 D 220 218 3 221 3 0 0 107 186 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 5 117 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 82 - C - - - ML 222 221 3 224 3 1 3 109 188 -5.501 -0.065 -5.501 -1.220 1.270 -0.755 -0.821 D 223 221 3 224 3 0 0 105 185 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 5 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 83 - A - - - ML 225 224 3 227 3 1 3 107 187 -5.501 -0.065 -5.501 1.048 -0.351 -0.956 -0.661 D 226 224 3 227 3 0 0 104 183 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 4 114 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 84 - G - - - ML 228 227 3 230 3 1 2 106 185 -5.501 -0.065 -5.501 -0.716 -1.816 1.460 -1.488 D 229 227 3 230 3 0 0 103 181 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 4 113 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 85 - C - - - ML 231 230 3 233 3 1 2 104 183 -5.501 -0.065 -5.501 -0.253 1.072 -1.184 -0.692 D 232 230 3 233 3 0 0 101 180 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 3 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 86 - C - - - ML 234 233 3 236 3 1 2 103 182 -3.991 -0.128 -5.501 -1.771 1.588 -1.959 -1.173 D 235 233 3 236 3 0 0 100 179 -11.551 -1.585 -0.585 IL 236 236 3 236 3 1 3 103 182 -3.399 -0.144 -11.043 0.000 0.000 0.000 0.000 [ MATL 79 ] 88 - A - - - ML 237 236 3 239 3 1 1 102 181 -5.501 -0.065 -5.501 1.127 -0.497 -0.999 -0.719 D 238 236 3 239 3 0 0 99 177 -11.551 -1.585 -0.585 IL 239 239 3 239 3 1 3 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 80 ] 89 - u - - - ML 240 239 3 242 3 1 1 101 179 -5.501 -0.065 -5.501 -0.339 -0.745 -0.279 0.839 D 241 239 3 242 3 0 0 97 175 -11.551 -1.585 -0.585 IL 242 242 3 242 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 81 ] 90 - A - - - ML 243 242 3 245 3 1 1 99 177 -5.501 -0.065 -5.501 1.661 -2.015 -1.754 -1.764 D 244 242 3 245 3 0 0 96 174 -11.551 -1.585 -0.585 IL 245 245 3 245 3 1 2 106 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 82 ] 91 - u - - - ML 246 245 3 248 3 1 1 98 176 -5.501 -0.065 -5.501 -0.383 -0.764 -0.406 0.918 D 247 245 3 248 3 0 0 94 172 -11.551 -1.585 -0.585 IL 248 248 3 248 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 83 ] 92 - U - - - ML 249 248 3 251 3 1 1 96 174 -5.501 -0.065 -5.501 -0.347 -0.892 -1.051 1.132 D 250 248 3 251 3 0 0 93 170 -11.551 -1.585 -0.585 IL 251 251 3 251 3 1 2 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 84 ] 93 - a - - - ML 252 251 3 254 3 1 1 95 172 -5.501 -0.065 -5.501 0.554 -0.169 -0.190 -0.384 D 253 251 3 254 3 0 0 91 168 -11.551 -1.585 -0.585 IL 254 254 3 254 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 85 ] 94 - a - - - ML 255 254 3 257 3 1 1 93 170 -5.501 -0.065 -5.501 0.431 -0.569 0.331 -0.472 D 256 254 3 257 3 0 0 89 166 -11.551 -1.585 -0.585 IL 257 257 3 257 3 1 1 100 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 86 ] 95 - A - - - ML 258 257 3 260 3 1 1 91 169 -5.501 -0.065 -5.501 1.208 -1.320 -0.347 -0.990 D 259 257 3 260 3 0 0 88 165 -11.551 -1.585 -0.585 IL 260 260 3 260 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 87 ] 96 - G - - - ML 261 260 3 263 3 1 1 90 167 -5.501 -0.065 -5.501 -0.509 -0.742 1.094 -0.825 D 262 260 3 263 3 0 0 86 163 -11.551 -1.585 -0.585 IL 263 263 3 263 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 88 ] 97 - a - - - ML 264 263 3 266 3 1 1 88 165 -5.501 -0.065 -5.501 0.700 -0.430 -0.167 -0.431 D 265 263 3 266 3 0 0 85 161 -11.551 -1.585 -0.585 IL 266 266 3 266 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 89 ] 98 - A - - - ML 267 266 3 269 3 1 1 87 163 -5.501 -0.182 -3.378 1.096 -0.440 -0.981 -0.695 D 268 266 3 269 3 0 0 83 159 -11.551 -1.585 -0.585 IL 269 269 3 269 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 90 ] 99 - G - - - ML 270 269 3 272 3 1 1 85 162 -5.390 -0.071 -5.390 -0.867 -0.641 1.182 -0.885 D 271 269 3 272 3 0 0 82 157 -12.634 -2.669 -0.247 IL 272 272 3 272 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 91 ] 100 - A - - - ML 273 272 3 275 3 1 1 84 160 -5.390 -0.071 -5.390 1.121 -1.183 -0.266 -0.853 D 274 272 3 275 3 0 0 81 157 -12.634 -0.545 -1.669 IL 275 275 3 275 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 92 ] 101 - a - - - ML 276 275 3 278 3 1 1 82 158 -5.501 -0.065 -5.501 0.873 -1.173 0.215 -0.823 D 277 275 3 278 3 0 0 78 154 -11.551 -1.585 -0.585 IL 278 278 3 278 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 93 ] 102 - A - - - ML 279 278 3 281 3 1 1 80 156 -5.501 -0.065 -5.501 1.183 -1.064 -1.027 -0.395 D 280 278 3 281 3 0 0 77 152 -11.551 -1.585 -0.585 IL 281 281 3 281 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 94 ] 103 - g - - - ML 282 281 3 284 3 1 1 79 154 -2.998 -0.313 -3.835 0.481 -1.213 0.697 -0.857 D 283 281 3 284 3 0 0 75 150 -11.551 -1.585 -0.585 IL 284 284 3 284 3 1 1 79 154 -4.624 -0.060 -12.268 0.000 0.000 0.000 0.000 [ MATL 95 ] 105 - C - - - ML 285 284 3 287 3 1 1 78 153 -5.430 -0.069 -5.430 -1.217 1.203 -1.393 -0.174 D 286 284 3 287 3 0 0 73 147 -12.337 -2.371 -0.310 IL 287 287 3 287 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 96 ] 106 - u - - - ML 288 287 3 290 3 1 1 76 151 -5.430 -0.069 -5.430 0.028 -0.057 -0.688 0.483 D 289 287 3 290 3 0 0 71 145 -12.337 -2.371 -0.310 IL 290 290 3 290 3 1 1 84 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 97 ] 107 - a - - - ML 291 290 3 293 3 1 1 74 149 -5.430 -0.069 -5.430 0.201 -0.122 -0.054 -0.047 D 292 290 3 293 3 0 0 70 144 -12.337 -2.371 -0.310 IL 293 293 3 293 3 1 1 82 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 98 ] 108 - u - - - ML 294 293 3 296 3 1 1 73 146 -5.430 -0.069 -5.430 -0.280 0.221 -0.775 0.512 D 295 293 3 296 3 0 0 70 143 -12.337 -0.705 -1.371 IL 296 296 3 296 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 99 ] 109 - c - - - ML 297 296 3 299 3 1 1 71 144 -5.501 -0.065 -5.501 -0.328 0.737 -0.310 -0.455 D 298 296 3 299 3 0 0 67 140 -11.551 -1.585 -0.585 IL 299 299 3 299 3 1 1 79 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 100 ] 110 - a - - - ML 300 299 3 302 3 1 1 69 142 -5.501 -0.065 -5.501 0.463 -0.103 -0.124 -0.372 D 301 299 3 302 3 0 0 65 137 -11.551 -1.585 -0.585 IL 302 302 3 302 3 1 1 77 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 101 ] 111 - a - - - ML 303 302 3 305 3 1 1 67 140 -5.501 -0.065 -5.501 0.567 -0.082 -0.304 -0.388 D 304 302 3 305 3 0 0 63 135 -11.551 -1.585 -0.585 IL 305 305 3 305 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 102 ] 112 - c - - - ML 306 305 3 308 3 1 1 65 137 -5.501 -0.065 -5.501 -0.782 0.804 -0.383 -0.143 D 307 305 3 308 3 0 0 60 132 -11.551 -1.585 -0.585 IL 308 308 3 308 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 103 ] 113 - U - - - ML 309 308 3 311 3 1 1 63 135 -5.501 -0.065 -5.501 -0.966 -0.939 -0.555 1.193 D 310 308 3 311 3 0 0 58 130 -11.551 -1.585 -0.585 IL 311 311 3 311 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 104 ] 114 - C - - - ML 312 311 3 314 3 1 1 61 132 -5.501 -0.065 -5.501 -1.771 1.588 -1.959 -1.173 D 313 311 3 314 3 0 0 56 127 -11.551 -1.585 -0.585 IL 314 314 3 314 3 1 1 70 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 105 ] 115 - u - - - ML 315 314 3 317 3 1 1 58 129 -5.501 -0.065 -5.501 -0.645 -0.160 -0.333 0.741 D 316 314 3 317 3 0 0 53 123 -11.551 -1.585 -0.585 IL 317 317 3 317 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 106 ] 116 - G - - - ML 318 317 3 320 3 1 1 56 126 -5.501 -0.065 -5.501 -0.993 -0.789 1.288 -1.068 D 319 317 3 320 3 0 0 50 119 -11.551 -1.585 -0.585 IL 320 320 3 320 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 107 ] 117 - a - - - ML 321 320 3 323 3 1 1 53 123 -5.501 -0.065 -5.501 0.706 -0.777 -0.232 -0.100 D 322 320 3 323 3 0 0 45 114 -11.551 -1.585 -0.585 IL 323 323 3 323 3 1 1 64 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 108 ] 118 - G - - - ML 324 323 3 326 3 1 1 49 118 -5.501 -0.065 -5.501 -1.619 -2.322 1.692 -2.036 D 325 323 3 326 3 0 0 32 101 -11.551 -1.585 -0.585 IL 326 326 3 326 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 109 ] 119 - G - - - ML 327 326 3 329 2 1 1 1 1 * 0.000 -0.963 -0.671 1.240 -1.007 D 328 326 3 329 2 0 0 0 0 * 0.000 IL 329 329 3 329 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 110 ] - - - - - - E 330 329 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SOX2OT_exon4 ACC RF01954 DESC SOX2 overlapping transcript exon 4 LENG 109 MAXL 204 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 9 20:09:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01954/CM NSEQ 10 EFFN 2.329102 CKSUM 352471722 STATS LOCAL MSV -9.3732 0.71820 STATS LOCAL VITERBI -10.5530 0.71820 STATS LOCAL FORWARD -3.3571 0.71820 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31408 1.37249 1.30276 1.57975 1.38629 1.38629 1.38629 1.38629 0.02712 4.92345 3.93827 0.39730 1.11515 0.00000 * 1 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 2 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 3 2.31455 0.50286 2.44345 1.56288 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 4 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.12589 3.81311 2.34127 1.46634 0.26236 1.09861 0.40547 5 2.38661 2.82496 0.25322 2.62485 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 1.84959 0.17115 6 2.38661 2.82496 0.25322 2.62485 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 1.84959 0.17115 7 2.31215 2.12420 2.40920 0.36884 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 1.84959 0.17115 8 1.91376 0.80872 1.70673 1.48905 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 1.84959 0.17115 9 2.45922 0.33927 2.57817 2.06913 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 1.84959 0.17115 10 0.64732 2.02733 1.98141 1.57508 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 0.37776 1.15645 11 0.59173 2.27138 1.54502 2.03903 - A - - : 1.38629 1.38629 1.38629 1.38629 0.12589 3.81311 2.34127 1.46634 0.26236 1.09861 0.40547 12 2.38661 2.82496 0.25322 2.62485 - G - - : 1.38629 1.38629 1.38629 1.38629 0.09627 2.68926 3.73609 0.09965 2.35546 1.84959 0.17115 13 2.45922 0.33927 2.57817 2.06913 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 1.84959 0.17115 14 2.08907 0.60419 1.76858 1.83821 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 0.37776 1.15645 15 2.44944 2.23857 2.55527 0.31557 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 16 1.88278 2.64485 0.37438 2.41795 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 17 2.44944 2.23857 2.55527 0.31557 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 18 0.23515 2.78316 2.60239 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 19 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 20 2.35397 0.46281 2.48492 1.64940 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 21 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 22 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 23 1.84316 0.50256 2.35474 1.95346 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 24 0.71426 1.53300 2.02799 1.81426 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 25 0.49279 2.35087 1.74464 2.12789 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 26 0.97956 1.89683 1.58328 1.31238 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 27 2.44944 2.23857 2.55527 0.31557 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 28 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 29 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 30 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08880 2.76628 3.81311 0.09965 2.35546 1.09861 0.40547 31 0.23515 2.78316 2.60239 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 32 2.14904 1.55741 2.26487 0.56408 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 33 0.49279 2.35087 1.74464 2.12789 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 34 0.23515 2.78316 2.60240 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 35 2.08192 2.04984 1.82728 0.53494 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 36 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 37 2.44944 2.23857 2.55527 0.31557 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 38 1.64838 0.91352 1.70634 1.49164 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 39 2.44944 2.23857 2.55527 0.31557 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 40 2.09660 2.01628 0.46229 2.17036 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 41 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 42 0.23515 2.78316 2.60239 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 43 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 44 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 45 2.14904 1.55741 2.26487 0.56408 - U - - : 1.38629 1.38629 1.38629 1.38629 0.08880 2.76628 3.81311 0.09965 2.35546 1.09861 0.40547 46 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 47 0.89060 2.19583 1.09033 1.95039 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 48 2.44944 2.23857 2.55527 0.31557 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 49 0.84285 1.59719 1.90812 1.52008 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 50 0.59173 2.27138 1.54502 2.03903 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 51 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 52 0.46215 2.38269 1.81501 2.16340 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 53 0.57946 1.78131 2.09549 1.90802 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 54 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.10490 3.81311 2.55744 1.46634 0.26236 1.09861 0.40547 55 2.49877 0.32446 2.62083 2.10249 - C - - : 1.38629 1.38629 1.38629 1.38629 0.13379 2.28425 3.75609 0.71342 0.67327 1.70660 0.20026 56 1.02283 1.44759 1.56694 1.62656 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04788 3.75609 3.75609 1.46634 0.26236 0.45093 1.01345 57 0.68608 2.22386 1.38257 1.98538 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 58 0.60521 1.73111 2.07845 1.88500 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 59 0.23515 2.78316 2.60240 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 60 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.20872 1.79397 3.81311 0.55435 0.85437 1.09861 0.40547 61 0.58004 1.78017 2.09509 1.90747 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 62 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 63 0.23515 2.78316 2.60239 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 64 0.23515 2.78316 2.60239 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 65 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 66 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.12589 2.34127 3.81311 0.05688 2.89515 1.09861 0.40547 67 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 68 0.65444 2.05368 2.03489 1.50819 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 69 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 70 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 71 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 72 0.90093 2.19665 1.07732 1.95103 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 73 1.00222 1.61735 1.58159 1.47463 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 74 2.23195 0.50587 1.90945 1.95519 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 75 0.65954 1.62957 2.04922 1.84478 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 76 1.88278 2.64485 0.37438 2.41795 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 77 1.56175 0.64346 2.20683 1.86620 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 78 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.08880 2.76628 3.81311 0.09965 2.35546 1.09861 0.40547 79 0.60521 1.73111 2.07845 1.88500 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 80 1.62134 1.90243 1.57979 0.80488 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 81 0.23515 2.78316 2.60240 2.60898 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 82 1.65180 1.91586 1.66776 0.74991 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 83 1.62656 2.00460 2.11464 0.60147 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 84 1.00236 1.50358 1.51830 1.65249 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 85 1.08787 1.78101 1.15709 1.71370 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 86 0.54910 2.30157 1.62660 2.07283 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 87 1.73894 1.90033 0.62808 1.95785 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 88 0.90088 1.68402 1.50177 1.68511 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 89 0.62626 1.69108 2.06608 1.86813 - A - - : 1.38629 1.38629 1.38629 1.38629 0.12589 3.81311 2.34127 1.46634 0.26236 1.09861 0.40547 90 1.98698 1.83064 0.56708 1.99949 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 1.84959 0.17115 91 0.60953 2.20628 1.57079 1.97760 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04887 3.73609 3.73609 1.46634 0.26236 0.37776 1.15645 92 0.78143 2.19943 1.23761 1.95683 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 93 0.56627 2.12378 2.09785 1.66041 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 94 1.05307 2.22741 0.90310 1.98039 - g - - : 1.38629 1.38629 1.38629 1.38629 0.21721 2.07798 2.65842 0.04142 3.20471 1.09861 0.40547 95 2.22989 0.55214 2.35201 1.50704 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04749 3.76394 3.76394 1.46634 0.26236 1.64346 0.21482 96 1.36663 1.42558 1.86305 1.05134 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04749 3.76394 3.76394 1.46634 0.26236 1.64346 0.21482 97 1.24700 1.47100 1.42347 1.41856 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04749 3.76394 3.76394 1.46634 0.26236 1.64346 0.21482 98 1.58052 1.23306 1.92344 1.03106 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04749 3.76394 3.76394 1.46634 0.26236 0.48877 0.95031 99 1.61353 0.87510 1.60107 1.70202 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 100 1.06512 1.45783 1.47222 1.64426 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 101 0.99354 1.44335 1.59697 1.65499 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 102 1.92809 0.82906 1.65151 1.48564 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 103 2.05592 2.03735 1.77100 0.55951 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 104 2.61369 0.28560 2.74408 2.19946 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 105 1.83369 1.49720 1.61703 0.87243 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 106 2.07455 1.93339 0.49351 2.12654 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 107 0.89678 1.92507 1.54684 1.45529 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 108 2.50834 2.99556 0.21366 2.79750 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04516 3.81311 3.81311 1.46634 0.26236 1.09861 0.40547 109 2.05390 1.85113 0.52709 2.08436 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99936 0.00000 * //